Original Host Research Articles

DNA‐Based Materials Inspired by Natural Extracellular DNA

AbstractThe advent of biotechnology has expedited the understanding of the biochemistry of deoxyribonucleic acids (DNA). In the past, DNA are thought to be present only in cell nucleus as bearers of the genetic code. With the identification of extracellular DNA in circulating body fluids, DNA are now utilized, at least experimentally, for diagnosis and treatment of diseases. Extracellular DNA of host origin trigger immune responses, and are closely linked to autoimmune disease, cancer‐related inflammation, bacteria adhesion and thrombosis. Recent advancements in DNA nanotechnology have led to the development of a series of DNA‐based materials for treating diseases because of their structural programmability. Current discussions on biosafety and immunogenicity of artificial DNA materials are insufficient. This issue severely restricts the clinical translation of these novel biotechnologies. The present review attempts to bridge the gap between natural extracellular DNA and their derivatives, DNA‐based materials. The pathological attributes of endogenous extracellular DNA motivate the design of targeting DNA materials. In addition, the fate of exogenous DNA in the host inspires the optimization of DNA materials in reducing immune rejection. These bioinspired strategies provide the blueprint for utilizing DNA materials in the management of diseases that are currently challenging to diagnose or treat.

Diaporthe actinidiicola: A novel species causing branch canker or dieback of fruit trees in Henan Province, China

AbstractPear (Pyrus), walnut (Juglans) and kiwifruit (Actinidia) are important cash crops in China. Recently, symptoms of branch canker or dieback have been frequently observed in many orchards in Henan Province and have resulted in high losses of fruit production. In this study, symptomatic branches were collected for aetiological isolation from three hosts during 2020 and 2021. Seven isolates from these hosts were identified as one novel species, based on morphological characteristics and phylogenetic analyses of the concatenated sequences of the internal transcribed spacer of the ribosomal DNA (ITS), translation elongation factor 1α (TEF), β‐tubulin (TUB), histone (HIS) and calmodulin (CAL). We proposed the name Diaporthe actinidiicola and completed Koch's postulates to confirm pathogenicity. Host range evaluation indicated that D. actinidiicola could infect all inoculated fruit trees (pear, kiwifruit, walnut, apple [Malus] and peach [Prunus]) and the isolates from different hosts were most virulent on their original host. This study characterizes a novel Diaporthe species from three different hosts in China and contributes useful data for practicable disease management.

Europium enrichment and hierarchical formation of the Galactic halo

Context.The origin of the large star-to-star variation of the [Eu/Fe] ratios observed in the extremely metal-poor (at [Fe/H] ≤ −3) stars of the Galactic halo is still a matter of debate.Aims.In this paper, we explore this problem by putting our stochastic chemical evolution model in the hierarchical clustering framework, with the aim of explaining the observed spread in the halo.Methods.We compute the chemical enrichment of Eu occurring in the building blocks that have possibly formed the Galactic halo. In this framework, the enrichment from neutron star mergers can be influenced by the dynamics of the binary systems in the gravitational potential of the original host galaxy. In the least massive systems, the neutron stars can merge outside the host galaxy and so only a small fraction of newly produced Eu can be retained by the parent galaxy itself.Results.In the framework of this new scenario, the accreted merging neutron stars are able to explain the presence of stars with sub-solar [Eu/Fe] ratios at [Fe/H] ≤ −3, but only if we assume a delay time distribution for merging of the neutron stars ∝t−1.5. We confirm the correlation between the dispersion of [Eu/Fe] at a given metallicity and the fraction of massive stars which give origin to neutron star mergers. The mixed scenario, where both neutron star mergers and magneto-rotational supernovae do produce Eu, can explain the observed spread in the Eu abundance also for a delay time distribution for mergers going either as ∝t−1or ∝t−1.5.

Návrat „domů“: přistěhovalecké vlny do Arménie po druhé světové válce

The paper deals with the repatriation wave of Armenians from the Diaspora to Soviet Armenia in the years 1946–1948. It was the largest targeted and systematic immigration back to the Republic of Armenia, perceived primarily as a motherland and Promised Land; the migration wave and its impact could be considered in the frame of Hebrew aliyahs, or “ascension upward” (toward the Holy City). Returning from exile is called nergaghth in Armenian. The collective memory of Soviet Armenia has usually depicted this immigration as a success, a rescue of a nation threatened by genocide and an afflux of “new blood”; however, the repatriation was perceived as disappointment and historical injustice by repatriates and considered one of the reasons for tensions between the Diaspora and its motherland. After 1956, the majority of repatriates returned to their original host countries; those who remained in Armenia are (even after several generations) called by the pejorative term akhpar.

Jewels on the go: exotic buprestids around the world (Coleoptera, Buprestidae)

Buprestidae (Coleoptera: Buprestoidea) is one of the three wood-borer beetle groups of major phytosanitary interest worldwide, together with Cerambycidae and Scolytinae (Curculionidae). As in other beetle families, some buprestid species have been unintentionally or intentionally introduced around the world, in some cases causing significant environmental and economic damage in the invaded territories. Despite the phytosanitary relevance of the Buprestidae, information regarding the identity of exotic buprestids, their biogeographic areas of origin, introduction pathways, and larval host plants, have remained scattered in the literature. Our objective was to summarize much of the existing knowledge on these topics in the present paper. Our analysis resulted in a list of 115 exotic buprestids worldwide, representing introductions both within and between biogeographic realms and corresponding to less than 1% of the known buprestid species worldwide. Invasiveness does not seem to be linked to their larval host plant preferences, as introduced species utilize 158 plant genera in 70 plant families and are equally represented in all feeding guilds (monophagous, oligophagous, and polyphagous). As trade of plants or plant parts can serve as a pathway for future introductions, the information reported in this review can help in pest risk assessment.

SARS-CoV-2 Nucleocapsid Protein Is a Potential Therapeutic Target for Anticoronavirus Drug Discovery.

SARS-CoV-2, the etiologic agent of the COVID-19 pandemic, is a highly contagious positive-sense RNA virus. Its explosive community spread and the emergence of new mutant strains have created palpable anxiety even in vaccinated people. The lack of effective anticoronavirus therapeutics continues to be a major global health concern, especially due to the high evolution rate of SARS-CoV-2. The nucleocapsid protein (N protein) of SARS-CoV-2 is highly conserved and involved in diverse processes of the virus replication cycle. Despite its critical role in coronavirus replication, N protein remains an unexplored target for anticoronavirus drug discovery. Here, we demonstrate that a novel compound, K31, binds to the N protein of SARS-CoV-2 and noncompetitively inhibits its binding to the 5' terminus of the viral genomic RNA. K31 is well tolerated by SARS-CoV-2-permissive Caco2 cells. Our results show that K31 inhibited SARS-CoV-2 replication in Caco2 cells with a selective index of ~58. These observations suggest that SARS-CoV-2 N protein is a druggable target for anticoronavirus drug discovery. K31 holds promise for further development as an anticoronavirus therapeutic. IMPORTANCE The lack of potent antiviral drugs for SARS-CoV-2 is a serious global health concern, especially with the explosive spread of the COVID-19 pandemic worldwide and the constant emergence of new mutant strains with improved human-to-human transmission. Although an effective coronavirus vaccine appears promising, the lengthy vaccine development processes in general and the emergence of new mutant viral strains with a potential to evade the vaccine always remain a serious concern. The antiviral drugs targeted to the highly conserved targets of viral or host origin remain the most viable and timely approach, easily accessible to the general population, in combating any new viral illness. The majority of anticoronavirus drug development efforts have focused on spike protein, envelope protein, 3CLpro, and Mpro. Our results show that virus-encoded N protein is a novel therapeutic target for anticoronavirus drug discovery. Due to its high conservation, the anti-N protein inhibitors will likely have broad-spectrum anticoronavirus activity.

Proteomics and Immune Response Differences in Apis mellifera and Apis cerana Inoculated with Three Nosema ceranae Isolates.

Nosema ceranae infects midgut epithelial cells of the Apis species and has jumped from its original host A. cerana to A. mellifera worldwide, raising questions about the response of the new host. We compared the responses of these two species to N. ceranae isolates from A. cerana, A. mellifera from Thailand and A. mellifera from France. Proteomics and transcriptomics results were combined to better understand the impact on the immunity of the two species. This is the first combination of omics analyses to evaluate the impact of N. ceranae spores from different origins and provides new insights into the differential immune responses in honeybees inoculated with N. ceranae from original A. cerana. No difference in the antimicrobial peptides (AMPs) was observed in A. mellifera, whereas these peptides were altered in A. cerana compared to controls. Inoculation of A. mellifera or A. cerana with N. ceranae upregulated AMP genes and cellular-mediated immune genes but did not significantly alter apoptosis-related gene expression. A. cerana showed a stronger immune response than A. mellifera after inoculation with different N. ceranae isolates. N. ceranae from A. cerana had a strong negative impact on the health of A. mellifera and A. cerana compared to other Nosema isolates.

Insertion Sequences Determine Plasmid Adaptation to New Bacterial Hosts.

Plasmids facilitate the vertical and horizontal spread of antimicrobial resistance genes between bacteria. The host range and adaptation of plasmids to new hosts determine their impact on the spread of resistance. In this work, we explore the mechanisms driving plasmid adaptation to novel hosts in experimental evolution. Using the small multicopy plasmid pB1000, usually found in Pasteurellaceae, we studied its adaptation to a host from a different bacterial family, Escherichia coli. We observed two different mechanisms of adaptation. One mechanism is single nucleotide polymorphisms (SNPs) in the origin of replication (oriV) of the plasmid, which increase the copy number in E. coli cells, elevating the stability, and resistance profile. The second mechanism consists of two insertion sequences (ISs), IS1 and IS10, which decrease the fitness cost of the plasmid by disrupting an uncharacterized gene on pB1000 that is harmful to E. coli. Both mechanisms increase the stability of pB1000 independently, but only their combination allows long-term maintenance. Crucially, we show that the mechanisms have a different impact on the host range of the plasmid. SNPs in oriV prevent the replication in the original host, resulting in a shift of the host range. In contrast, the introduction of ISs either shifts or expands the host range, depending on the IS. While IS1 leads to expansion, IS10 cannot be reintroduced into the original host. This study gives new insights into the relevance of ISs in plasmid-host adaptation to understand the success in spreading resistance. IMPORTANCE ColE1-like plasmids are small, mobilizable plasmids that can be found across at least four orders of Gammaproteobacteria and are strongly associated with antimicrobial resistance genes. Plasmid pB1000 carries the gene blaROB-1, conferring high-level resistance to penicillins and cefaclor. pB1000 has been described in various species of the family Pasteurellaceae, for example, in Haemophilus influenzae, which can cause diseases such as otitis media, meningitis, and pneumonia. To understand the resistance spread through horizontal transfer, it is essential to study the mechanisms of plasmid adaptation to novel hosts. In this work we identify that a gene from pB1000, which encodes a peptide that is toxic for E. coli, and the low plasmid copy number (PCN) of pB1000 in E. coli cells are essential targets in the described plasmid-host adaptation and therefore limit the spread of pB1000-encoded blaROB-1. Furthermore, we show how the interplay of two adaptation mechanisms leads to successful plasmid maintenance in a different bacterial family.

The Most Common Characteristics of Fragile Video Watermarking

The progress of network and multimedia technologies has been phenomenal during the previous two decades. Unauthorized users will be able to copy, retransmit, modify reproduction, and upload the contents more easily as a result of this innovation. Malicious attackers are quite concerned about the development and widespread use of digital video. Digital watermarking technology gives solutions to the aforementioned problems. Watermarking methods can alleviate these issues by embedding a secret watermark in the original host data, allowing the genuine user or file owner to identify any manipulation. In this study, lots of papers have been analyzed and studied carefully, in the period 2011–2022. The historical basis of the subject should not be forgotten so studying old research will give a clear idea of the topic. To aid future researchers in this subject, we give a review of fragile watermarking approaches and some related papers presented in recent years. This paper presents a comparison of many relevant works in this field based on some of the outcomes and improvements gained in these studies, which focuses on the common characteristics that increase the effect of watermarking techniques such as invisibility, tamper detection, recovery, and security

Phylogenetic Analysis of Cucurbit Chlorotic Yellows Virus from Melon in 2020 in Chungbuk, Korea

Cucurbit chlorotic yellows virus (CCYV) is a plant virus that causes damage to cucurbit crops such as watermelon and cucumber, and is transmitted by an insect vector known as the whitefly. Since CCYV was first detected on cucumber in Chungbuk in 2018, it has been reported in other areas including Gyeongsang in Korea. In 2020, we performed field surveys of yellowing diseases in the greenhouses growing melon and watermelon in Chungbuk (Jincheon and Eumseong). Reverse transcription-polymerase chain reaction analysis of 79 collected samples including melon, watermelon, and weeds resulted in detection of CCYV in 4 samples: Three samples were singly infected with CCYV and one samples was mixed infected with CCYV, Cucurbit aphid borne yellows virus, and Watermelon mosaic virus. The complete genome sequences of the four collected CCYV melon isolates (ES 1–ES 4) were determined and genetically compared with those of previously reported CCYV isolates retrieved from GenBank. Phylogenetic analyses of RNA 1 and 2 sequences revealed that four ES isolates were clustered in one group and closely related to the CCYV isolates from China. The analysis also revealed very low genetic diversity among the CCYV ES isolates. In general, CCYV isolates showed little genetic diversity, regardless of host or geographic origins. CCYV has the potential to pose a serious threat to melon, watermelon, and cucumber production in Korea. Further studies are needed to examine the pathogenicity and transmissibility of CCYV in weeds and other cucurbits including watermelon.

Polydomus karssenii gen. nov. sp. nov. is a dark septate endophyte with a bifunctional lifestyle parasitising eggs of plant parasitic cyst nematodes (Heterodera spp.)

In this study fungal strains were investigated, which had been isolated from eggs of the cereal cyst nematode Heterodera filipjevi, and roots of Microthlaspi perfoliatum (Brassicaceae). The morphology, the interaction with nematodes and plants and the phylogenetic relationships of these strains originating from a broad geographic range covering Western Europe to Asia Minor were studied. Phylogenetic analyses using five genomic loci including ITSrDNA, LSUrDNA, SSUrDNA, rpb2 and tef1-α were carried out. The strains were found to represent a distinct phylogenetic lineage most closely related to Equiseticola and Ophiosphaerella, and Polydomus karssenii (Phaeosphaeriaceae, Pleosporales) is introduced here as a new species representing a monotypic genus. The pathogenicity tests against nematode eggs fulfilled Koch’s postulates using in vitro nematode bioassays and showed that the fungus could parasitise its original nematode host H. filipjevi as well as the sugar beet cyst nematode H. schachtii, and colonise cysts and eggs of its hosts by forming highly melanised moniliform hyphae. Light microscopic observations on fungus-root interactions in an axenic system revealed the capacity of the same fungal strain to colonise the roots of wheat and produce melanised hyphae and microsclerotia-like structure typical for dark septate endophytes. Confocal laser scanning microscopy further demonstrated that the fungus colonised the root cells by predominant intercellular growth of hyphae, and frequent formation of appressorium-like as well as penetration peg-like structures through internal cell walls surrounded by callosic papilla-like structures. Different strains of the new fungus produced a nearly identical set of secondary metabolites with various biological activities including nematicidal effects irrespective of their origin from plants or nematodes.

Robust color image watermarking algorithm based on synchronization correction with multi-layer perceptron and Cauchy distribution model

A robust color image watermarking algorithm based on the multi-layer Perceptron (MLP) and Cauchy distribution model is proposed. The algorithm has great performance against geometric attacks. Firstly, the central region of the Y-color channel is extracted, and the watermark is embedded into the low-frequency component by dual-tree complex wavelet transform (DTCWT). A synchronization correction technique based on the MLP model is used prior to the watermark extraction. When the MLP model is trained, the position and scale parameters of the Cauchy distribution are employed to generate the image feature vector after first calculating the quaternion discrete cosine transform (QDCT) of the original color host image. The new 3D hyperchaotic mapping is used during the algorithmic process to increase security, which is employed for scrambling, encryption, and embedding of watermarks, respectively. The experimental results demonstrate that the proposed algorithm has good imperceptibility, accurate model prediction, and excellent robustness against common image processing attacks and geometric attacks.

The regenerative treatment of costal osteochondral graft implantation for partial growth arrest using a rabbit model

PurposeTo investigate the feasibility of cylindrical costal osteochondral graft transplantation as a novel regenerative treatment in growth arrest. MethodsThe medial portion of the proximal tibial growth plate of 6-week-old male New Zealand White rabbits was resected to establish an experimental model of partial growth plate injury. The rabbits were divided into four groups: no-treatment, bone wax transplantation, costal chondral graft, and costal osteochondral graft groups. Radiographic and micro-computed tomography scan results were analyzed to evaluate angular deformity of the tibia and bony bridge formation at the injury site. In addition, repair of the injured growth plate cartilage was assessed histologically at 4, 8, and 12 weeks postoperatively. ResultsRadiographic examination revealed that bone wax transplantation continuously decreased the medial proximal tibial angle (MPTA) while the costal chondral graft implantation reduced the decrease of MPTA at 12 weeks postoperatively. The costal osteochondral graft implantation recovered the MPTA, close to the normal. Histologically, the costal osteochondral grafts retained the MPTA in the injured site compared to costal chondral grafts. Additionally, hypertrophic chondrocytes were observed at the graft site in the costal osteochondral graft group at 12 weeks, suggesting that endochondral ossification may occur at the graft site similar to normal ossification. The fluorescence in situ hybridization analysis of osteochondral grafts transplanted from male to female rabbits indicated that they were replaced by cells of host origin. ConclusionThe costal osteochondral graft can achieve regeneration without bony bridge formation in partial growth plate injury.

A multivariate analysis of phenotypic traits of strains of Fusarium graminearum and F. meridionale supports structure by species

AbstractFusarium head blight (FHB) of wheat and Gibberella ear and stalk rot (GER and GSR) of maize are diseases of worldwide importance. Several phylogenetic species belonging to the Fusarium graminearum species complex (FGSC) cause FHB and GER/GSR in Brazil, but the dominant species varies depending on host. Fusarium graminearum is the most frequent cause of FHB, while F. meridionale is more often associated with GER/GSR. These two species are distinguished based on fixed sequence variations at a few genetic loci; however, relevance of these differences to reproduction, pathogenicity and toxigenicity has not been fully explored. A range of phenotypic traits were evaluated for a group of strains of F. graminearum and F. meridionale from wheat and maize. These included radial growth on agar plates, sexual and asexual reproduction, fungicide sensitivity, toxigenicity and pathogenicity on wheat and maize. Although intraspecies variation was observed for most traits, a multivariate analysis showed the strains were strongly structured by species, regardless of host origin. Increased sexual or asexual reproduction, deoxynivalenol production and aggressiveness on wheat heads were most important for distinguishing strains of F. graminearum, while faster mycelial growth in culture, nivalenol production and reduced colonization on detached maize silks were most important for distinguishing strains of F. meridionale. Thus, the phylogenetic distinction between F. graminearum and F. meridionale is supported by phenotypic differences that are relevant for pathogenicity (aggressiveness and mycotoxin production on wheat heads and maize silks, mycelial growth and sexual and asexual reproduction) and disease management (tebuconazole sensitivity).

On the haem auxotrophy of the soft tick Ornithodoros moubata

Genomes of ticks display reductions, to various extents, in genetic coding for enzymes of the haem biosynthetic pathway. Here, we mined available transcriptomes of soft tick species and identified transcripts encoding only half of the enzymes involved in haem biosynthesis. Transcripts identified across most species examined were those coding for porphobilinogen synthase, coproporphyrinogen oxidase, protoporphyrinogen oxidase, and ferrochelatase. Genomic retention of porphobilinogen synthase seems to be soft tick-restricted as no such homologue has been identified in any hard tick species. Bioinformatic mining is thus strongly indicative of the lack of biochemical capacity for de novo haem biosynthesis, suggesting a requirement for dietary haem. In the hard tick Ixodes ricinus, depletion of dietary haem, i.e. serum feeding, leads to oviposition of haem-free eggs, with no apparent embryogenesis and larvae formation. In this work, we show that serum-fed Ornithodoros moubata females, unlike those of I. ricinus, laid haem-containing eggs similarly to blood-fed controls, but only by a small proportion of the serum-fed females. To enhance the effect of dietary haem depletion, O. moubata ticks were serum-fed consecutively as last nymphal instars and females. These females laid eggs with profoundly reduced haem deposits, confirming the host origin of the haem. These data confirm the ability of soft ticks to take up and allocate host haem to their eggs in order to drive reproduction of the ticks.

The book of Lambda does not tell us that naturally occurring lysogens of Escherichia coli are likely to be resistant as well as immune

The most significant difference between bacteriophages functionally and ecologically is whether they are purely lytic (virulent) or temperate. Virulent phages can only be transmitted horizontally by infection, most commonly with the death of their hosts. Temperate phages can also be transmitted horizontally, but upon infection of susceptible bacteria, their genomes can be incorporated into that of their host's as a prophage and be transmitted vertically in the course of cell division by their lysogenic hosts. From what we know from studies with the temperate phage Lambda and other temperate phages, in laboratory culture, lysogenic bacteria are protected from killing by the phage coded for by their prophage by immunity; where upon infecting lysogens, the free temperate phage coded by their prophage is lost. Why are lysogens not only resistant but also immune to the phage coded by their prophage since immunity does not confer protection against virulent phages? To address this question, we used a mathematical model and performed experiments with temperate and virulent mutants of the phage Lambda in laboratory culture. Our models predict and experiments confirm that selection would favor the evolution of resistant and immune lysogens, particularly if the environment includes virulent phage that shares the same receptors as the temperate. To explore the validity and generality of this prediction, we examined 10 lysogenic Escherichia coli from natural populations. All 10 were capable of forming immune lysogens, but their original hosts were resistant to the phage coded by their prophage.

A17 EVIDENCE OF PROTEASE-MEDIATED PRO-NOCICEPTIVE EFFECTS OF FECAL SUPERNATANTS FROM CROHN'S DISEASE PATIENTS

Abstract Background Abdominal pain is a debilitating symptom of Crohn’s disease (CD). Despite the current treatment options for this disease, abdominal pain is an unresolved problem that commonly persists in the absence of active inflammation. This suggests that something other than inflammation is driving the pain during the quiescent phase. We have previously reported that microbial proteases can directly modulate the excitability of dorsal root ganglia (DRG) neurons, many of which are pain-sensing. We hypothesize that luminal proteases of CD patients are contributing to their abdominal pain. Purpose Determine whether luminal mediators in CD fecal samples induce changes in pain signalling. Method The effects of patient (active CD [n = 3] and healthy volunteer (HV) [n = 3]) fecal supernatant (FS) samples on pain-sensing neurons were assessed using ex-vivo single unit afferent nerve recordings from mouse colons. Each sample was tested in colonic preparations from a least 5 mice. To further examine cellular mechanisms, DRG neurons were isolated and incubated overnight in media containing CD FS or HV FS media. Changes in neuronal excitability were recorded by determining the rheobase (lower rheobase=increased excitability) using patch clamp recordings (n ≥ 9 DRG neurons/group). Protease inhibitors were applied in both bioassays to determine whether these inhibited the excitatory effect of FS. Lastly, total proteolytic activity in the CD and HV fecal samples was calculated using a casein colorimetric protease detection assay. Result(s) FS from HV had no effect on afferent nerve excitability (p = 0.8920). FS from active CD patients increased action potential discharge from colonic afferent nerves by 85% (p<0.0001) and selectively increased the activation of high-threshold units, which are putative nociceptors, by 44% (p=0.0074). A protease inhibitor cocktail (1:1000) and protease-activated receptor (PAR)-2 antagonist GB83 (10µM) both blocked the excitatory effects of CD FS (p<0.05). Overnight incubation with CD FS also had an excitatory effect on DRG neurons compared to HV FS (rheobase decreased by 46%, p<0.05). The effect of CD FS was blocked by GB83 (10µM) (p<0.001) and a serine protease inhibitor (FUT175; 100µM) (p<0.05) independently, but the activity was not blocked by E64 (30nM) a cysteine protease inhibitor. A 200-fold increase (p<0.0001) in total proteolytic activity was found in CD FS compared to HV FS. Conclusion(s) Luminal serine proteases, but not cysteine proteases, appear to be driving nociceptive signalling in CD patients. This provides insight into the generation of pain in CD patients and may be a potential target to mitigate this action. Further research is required to elucidate whether these pro-nociceptive proteases are of bacterial or host origin and their effects in the quiescent phase. Disclosure of Interest None Declared

Local environment drives rapid shifts in composition and phylogenetic clustering of seagrass microbiomes

Plant microbiomes depend on environmental conditions, stochasticity, host species, and genotype identity. Eelgrass (Zostera marina) is a unique system for plant–microbe interactions as a marine angiosperm growing in a physiologically-challenging environment with anoxic sediment, periodic exposure to air at low tide, and fluctuations in water clarity and flow. We tested the influence of host origin versus environment on eelgrass microbiome composition by transplanting 768 plants among four sites within Bodega Harbor, CA. Over three months following transplantation, we sampled microbial communities monthly on leaves and roots and sequenced the V4–V5 region of the 16S rRNA gene to assess community composition. The main driver of leaf and root microbiome composition was destination site; more modest effects of host origin site did not last longer than one month. Community phylogenetic analyses suggested that environmental filtering structures these communities, but the strength and nature of this filtering varies among sites and over time and roots and leaves show opposing gradients in clustering along a temperature gradient. We demonstrate that local environmental differences create rapid shifts in associated microbial community composition with potential functional implications for rapid host acclimation under shifting environmental conditions.

Diagenesis, compaction strain and deformation associated with chert and carbonate concretions in organic‐rich marl and phosphorite; Upper Cretaceous to Eocene, Jordan

ABSTRACTThis paper presents an integrated petrographic–geochemical–geomechanical study of the growth mechanisms of carbonate and chert concretions observed at outcrop and core from the Upper Cretaceous to Eocene organic‐rich carbonate mudrocks, central Jordan. It provides evidence for displacive and replacive concretion growth from the analysis of primary lithological characteristics, compaction strain and deformation structures associated with concretion growth. Concretions were analysed to determine the primary lithological controls on their development and the measurement of strain in the host rock to develop a method for constraining the growth mode and their paragenesis. Concretions exhibit either a replacive or displacive growth mode largely dependent on the original host lithology. Displacive concretions exhibit irregular shapes and semi‐fibrous internal structures in contrast to regular shapes and microcrystalline textures observed for replacive concretions. Cement fraction is high in both carbonate concretion types, indicating early formation in high‐porosity sediments at shallow burial depths. The strain field around displacive concretions is vertically asymmetrical. Conversely, it is symmetrical with uniform differential compaction for the replacive concretions. Evidence for displacive growth comes from triangular areas of chert at the lateral margins of some carbonate concretions, interpreted as areas of reduced strain. Another indicator is the forced asymmetrical folding of heterolithic host rocks around displacive concretions, with displacive carbonate units separated by trace laminae of the original (chert) beds. Enveloping chert beds exhibit early‐formed radial silica fractures with increased aperture size in the areas of maximum curvature. Carbon isotopic signatures of carbonate concretions show a strong correlation between concretion centres and host rock, suggesting a relatively shallow depth (first few tens of metres) of initial growth. Carbonate concretions are interpreted to have formed at shallow depths in the presence of alkaline pore waters rich in dissolved organic carbon in the presence of Mg2+ ions, available organic matter and redox‐sensitive metals such as U and Mo. A paragenetic history for the different concretion types is presented.

Genetic diversity of virus auxiliary metabolism genes associated with phosphorus metabolism in Napahai plateau wetland

Viruses play important roles in ecosystems by interfering with the central metabolic pathways of the host during infection via the expression of auxiliary metabolic genes (AMGs), altering the productivity of ecosystems and thus affecting geochemical cycling. In this study, the genetic diversity of phosphorus metabolism AMGs phoH, phoU and pstS was investigated by phylogenetic analysis, PCoA analysis, and alpha diversity analysis based on metagenomic data. It was found that the majority of the sequences were unique to Napahai plateau wetland. It was shown that the genetic diversity of phoH, phoU and pstS genes was independent of both habitats and host origins. In addition, the metabolic pathway of AMGs associated with the phosphorus cycling was identified based on metagenomic data. When phosphorus is deficient, virus utilizes AMGs to affect the metabolic pathway, contributing to higher phosphorus levels in the host and facilitating virus survival, replication, and propagation in the host cell.