ABSTRACT Cultivation can cause rapid depletion of soil organic matter (SOM), particularly in the humid tropics. Understanding the factors controlling SOM storage is a key step toward effective soil management for sustainable crop production. While clay + silt content is known to be an important factor for soil organic carbon (SOC) storage, recent studies have shown greater importance of oxalate-extracted Al (Alo; roughly corresponds to short-range-order aluminosilicate minerals and organo-Al complexes) and Fe (Feo). However, the extent to which these mineralogical factors control the response of SOM pool to land-use changes remains unclear, especially in the tropics. This study aimed to clarify the factors regulating SOM content in croplands compared to secondary forests or home gardens in Negros Occidental, Philippines. Along two line transects having a wide range of Alo contents, soil samples were collected at a depth of 0 − 10 cm from sugarcane sites (n = 33; long-term continuous cultivation of >70 years) that were paired with either secondary forests (n = 10) or home gardens (n = 20). Sugarcane sites had significantly lower SOC and total nitrogen (N) contents than secondary forest and home garden sites, whereas there was no clear difference between the latter two land uses. Both SOC and total N contents showed significant positive correlations with Alo content and, to a much less extent, with Feo content, but not with clay + silt content. The slope of the regression line between SOC and Alo was indifferent between sugarcane and the other two land uses, while the intercept was significantly lower in the sugarcane sites. These results suggest the protective role of Alo phases in both agricultural and forest soils and the presence of unprotected SOM (e.g. plant litter) in the latter sites. Furthermore, δ13C analysis suggested that the proportion of forest (C3 plant) derived carbon remaining in the sugarcane soils ranged between 10% and 50% and increased with Alo content. Together, our study showed indirect evidence of Alo-induced stabilization of SOM against long-term cultivation under the humid tropical environment.