Organic Electron Donors Research Articles

Dissulfurimicrobium hydrothermale gen. nov., sp. nov., a thermophilic, autotrophic, sulfur-disproportionating deltaproteobacterium isolated from a hydrothermal pond.

A thermophilic, anaerobic, chemolithoautotrophic bacterium (strain Sh68T) was isolated from a hydrothermal pond at Uzon Caldera, Kamchatka, Russia, using anoxic medium with elemental sulfur as the only energy source. Cells of strain Sh68T were Gram-stain-negative rods, 0.5-0.8 μm in diameter and 1.2-2.0 μm in length, motile by means of flagella. The temperature range for growth was 30-65 °C, with an optimum at 50-52 °C. The pH range for growth was 5.2-7.5, with optimum growth at pH 6.0-6.2. Growth of strain Sh68T was observed at NaCl concentrations ranging from 0 to 2.3 % (w/v). Strain Sh68T grew anaerobically with elemental sulfur as an energy source and bicarbonate/CO2 as a carbon source. Elemental sulfur was disproportionated to sulfide and sulfate. Growth was enhanced in the presence of poorly crystalline Fe(III) oxide (ferrihydrite) as a sulfide-scavenging agent. Strain Sh68T was also able to grow by disproportionation of thiosulfate and sulfite. Sulfate was not used as an electron acceptor either with H2 or with organic electron donors. Analysis of the 16S rRNA gene sequence revealed that the isolate belongs to the class Deltaproteobacteria and is related most closely to Dissulfuribacter thermophilus S69T (90.0 % similarity). On the basis of its physiological properties and results of phylogenetic analyses, strain Sh68T is considered to represent a novel species of a new genus, for which the name Dissulfurimicrobium hydrothermale gen. nov., sp. nov. is proposed. The type strain of Dissulfurimicrobium hydrothermale is Sh68T ( = JCM 19990T = VKM B-2854T). This is the first description of a sulfur-disproportionating thermophile from a terrestrial ecosystem.

Influence of COD/N ratio and carbon source on nitrogen removal in a structured-bed reactor subjected to recirculation and intermittent aeration (SBRRIA)

This study aimed to evaluate the influence of COD/N ratio and carbon source on simultaneous nitrogen and carbon removal processes. A continuous up-flow structured-bed reactor subjected to recirculation and intermittent aeration (SBRRIA) was operated with hydraulic retention time (HRT) of 11.2 ± 0.6 h. The carbon sources were meat peptone and sucrose. The COD/N ratio varied by maintaining the organic loading rate fixed at 1.07 kg COD m−3 d−1 and changing the total-N concentration. The COD/N ratios tested were 9.7 ± 1 (sucrose); 7.6 ± 1 (meat peptone); 2.9 ± 1 (meat peptone) and 2.9 ± 0.4 (sucrose). COD removal efficiencies remained above 90% in all experimental phases. At lower COD/N ratios, NH4+–N oxidation efficiencies were higher than 90%. An autotrophic metabolism by anammox process was observed in Phases III and IV, which was responsible for 35% and 27% of total-N loading removal rates, respectively. Therefore, the system achieved total nitrogen removal efficiencies of 84.6 ± 10.1 and 81.5 ± 5.3%, under low availability of organic electron donors.

Autotrophic antimonate bio-reduction using hydrogen as the electron donor

Antimony (Sb), a toxic metalloid, is soluble as antimonate (Sb(V)). While bio-reduction of Sb(V) is an effective Sb-removal approach, its bio-reduction has been coupled to oxidation of only organic electron donors. In this study, we demonstrate, for the first time, the feasibility of autotrophic microbial Sb(V) reduction using hydrogen gas (H2) as the electron donor without extra organic carbon source. SEM and EDS analysis confirmed the production of the mineral precipitate Sb2O3. When H2 was utilized as the electron donor, the consortium was able to fully reduce 650 μM of Sb(V) to Sb(III) in 10 days, a rate comparable to the culture using lactate as the electron donor. The H2-fed culture directed a much larger fraction of it donor electrons to Sb(V) reduction than did the lactate-fed culture. While 98% of the electrons from H2 were used to reduce Sb(V) by the H2-fed culture, only 12% of the electrons from lactate was used to reduce Sb(V) by the lactate-fed culture. The rest of the electrons from lactate went to acetate and propionate through fermentation, to methane through methanogenesis, and to biomass synthesis. High-throughput sequencing confirmed that the microbial community for the lactate-fed culture was much more diverse than that for the H2-fed culture, which was dominated by a short rod-shaped phylotype of Rhizobium (α-Protobacteria) that may have been active in Sb(V) reduction.

Combined Oxidation, Deprotonation, and Metal Coordination of a Redox‐Active Guanidine Ligand

AbstractGuanidino‐functionalized aromatic compounds (GFAs) are strong organic electron donors and redox‐active ligands. The diversity of GFA chemistry results from reaction sequences that are triggered by their oxidation. This work reports on reactions of a new GFA compound, namely, 1,2,4,5‐tetrakis(N,N′‐dicyclohexylguanidino)benzene, with transition metals, and analyzes the interplay between GFA oxidation, coordination, and hydrogen‐bond formation up to deprotonation. The reaction of the new GFA with [{PdCl(C3H5)}2] led to coordination and a coupled proton‐ and electron‐transfer reaction.

Two-chamber microbial fuel cell to simultaneously remove ethanolamine and nitrate

Microbial fuel cells (MFCs) are a promising technology to treat wastewater while recovering bioenergy and have been studied to remove carbon and nitrogen. Electrons generated at the anode from the oxidation of organic electron donors are used to reduce nitrate at the cathode, and these processes produce power. In this study, a two-chamber MFC that coupled an anode chamber and biocathode chamber was investigated to remove ethanolamine and nitrate. We developed an MFC in which micro-organisms at the cathode performed complete denitrification using electrons supplied by ethanolamine oxidation at the anode. The biocathode MFC produced a maximum power density of 8.41 W/m3 with a corresponding current and cell voltage of 2.9 mA and 170 mV, respectively. This research demonstrates that an MFC with both a biological anode and cathode simultaneously removed ethanolamine, produced power, and denitrified. Results from this study indicate that ethanolamine might be a suitable resource for generating electricity with MFC technology.

Organic Electron Donor–Acceptor Photoredox Catalysts: Enhanced Catalytic Efficiency toward Controlled Radical Polymerization

In this study, we designed and synthesized novel organic single electron donor-acceptor molecules containing a free base porphyrin and a thiocarbonylthio group. The porphyrin acts as a light-harvesting antenna and donates an excited electron upon light irradiation to the electron-accepting thiocarbonylthio group. The excited electronic state of the donor-acceptor generates a radical from the thiocarbonylthio compound to activate a living radical polymerization in the presence of monomers. Thus, these donor-acceptor systems play the roles of highly efficient photoredox catalysts and radical initiators. The presence of both donor and acceptor in a single molecule enhanced the electron transfer efficiency in comparison to the donor/acceptor mixture and consequently greatly increased polymerization rates of vinyl monomers under visible light irradiation. The polymerizations mediated by these electron donor-acceptor photoredox catalysts were investigated under green (λmax = 530 nm, 0.7 mW/cm2) and red (λmax = 635 nm, 0.7 mW/cm2) lights, which exhibited great control over molecular weights, molecular weight distributions, and end-group functionalities.

Persistence of the dominant soil phylum Acidobacteria by trace gas scavenging

The majority of microbial cells in global soils exist in a spectrum of dormant states. However, the metabolic processes that enable them to survive environmental challenges, such as nutrient-limitation, remain to be elucidated. In this work, we demonstrate that energy-starved cultures of Pyrinomonas methylaliphatogenes, an aerobic heterotrophic acidobacterium isolated from New Zealand volcanic soils, persist by scavenging the picomolar concentrations of H2 distributed throughout the atmosphere. Following the transition from exponential to stationary phase due to glucose limitation, the bacterium up-regulates by fourfold the expression of an eight-gene operon encoding an actinobacteria-type H2-uptake [NiFe]-hydrogenase. Whole-cells of the organism consume atmospheric H2 in a first-order kinetic process. Hydrogen oxidation occurred most rapidly under oxic conditions and was weakly associated with the cell membrane. We propose that atmospheric H2 scavenging serves as a mechanism to sustain the respiratory chain of P. methylaliphatogenes when organic electron donors are scarce. As the first observation of H2 oxidation to our knowledge in the Acidobacteria, the second most dominant soil phylum, this work identifies new sinks in the biogeochemical H2 cycle and suggests that trace gas oxidation may be a general mechanism for microbial persistence.

Tuning the opto-electronic properties of MoS2 layer using charge transfer interactions: effect of different donor molecules

We have performed density functional theory calculations to study the effect of adsorption of a set of organic electron donor molecules on single layer MoS2 to find the optimum condition to tune the charge transfer, as well as to find how it changes the electronic properties of single layer MoS2. We have performed our calculations for three sets of organic Lewis bases. We have found that all the molecules are physisorbed on MoS2. Our calculations show that the charge transfer from the molecules to the MoS2 layer is highly dependent upon the inductive effect and HOMO–LUMO gap of the molecules. Furthermore, we show that the charge transfer interaction tunes the electronic and optical property of MoS2 to a significant amount: for example, the band-gap of the system can be changed from 1.8 eV to even a low value of 0.2 eV, making it interesting for different optoelectronic device applications.

Pushing the Limits of Neutral Organic Electron Donors: A Tetra(iminophosphorano)‐Substituted Bispyridinylidene

AbstractA new ground‐state organic electron donor has been prepared that features four strongly π‐donating iminophosphorano substituents on a bispyridinylidene skeleton. Cyclic voltammetry reveals a record redox potential of −1.70 V vs. saturated calomel electrode (SCE) for the couple involving the neutral organic donor and its dication. This highly reducing organic compound can be isolated (44 %) or more conveniently generated in situ by a deprotonation reaction involving its readily prepared pyridinium ion precursor. This donor is able to reduce a variety of aryl halides, and, owing to its redox potential, was found to be the first organic donor to be effective in the thermally induced reductive SN bond cleavage of N,N‐dialkylsulfonamides, and reductive hydrodecyanation of malonitriles.

Pushing the limits of neutral organic electron donors: a tetra(iminophosphorano)-substituted bispyridinylidene.

A new ground-state organic electron donor has been prepared that features four strongly π-donating iminophosphorano substituents on a bispyridinylidene skeleton. Cyclic voltammetry reveals a record redox potential of −1.70 V vs. saturated calomel electrode (SCE) for the couple involving the neutral organic donor and its dication. This highly reducing organic compound can be isolated (44 %) or more conveniently generated in situ by a deprotonation reaction involving its readily prepared pyridinium ion precursor. This donor is able to reduce a variety of aryl halides, and, owing to its redox potential, was found to be the first organic donor to be effective in the thermally induced reductive S–N bond cleavage of N,N-dialkylsulfonamides, and reductive hydrodecyanation of malonitriles.

Porphyrin‐Based Bulk Heterojunction Organic Photovoltaics: The Rise of the Colors of Life

Organic photovoltaics (OPV) represent a thin‐film PV technology that offers attractive prospects for low‐cost and aesthetically appealing (colored, flexible, uniform, semitransparent) solar cells that are printable on large surfaces. In bulk heterojunction (BHJ) OPV devices, organic electron donor and acceptor molecules are intimately mixed within the photoactive layer. Since 2005, the power conversion efficiency of said devices has increased substantially due to insights in the underlying physical processes, device optimization, and chemical engineering of a vast number of novel light‐harvesting organic materials, either small molecules or conjugated polymers. As Nature itself has developed porphyrin chromophores for solar light to energy conversion, it seems reasonable to pursue artificial systems based on the same types of molecules. Porphyrins and their analogues have already been successfully implemented in certain device types, notably in dye‐sensitized solar cells, but they have remained largely unexplored in BHJ organic solar cells. Very recent successes do show, however, the strong (latent) prospects of porphyrinoid semiconductors as light‐harvesting and charge transporting materials in such devices. Here, an overview on the state‐of‐the‐art of porphyrin‐based solution‐processed BHJ OPV is provided and insights are given into the pathways to follow and hurdles to overcome toward further improvements of porphyrinic materials and devices.

What Makes a Strong Organic Electron Donor (or Acceptor)?

Organic electron donors are of importance for a number of applications. However, the factors that are essential for a directed design of compounds with desired reduction power are not clear. Here, we analyze these factors in detail. The intrinsic reduction power, which neglects the environment, has to be separated from extrinsic (e.g., solvent) effects. This power could be quantified by the gas-phase ionization energy. The experimentally obtained redox potentials in solution and the calculated ionization energies in a solvent (modeled with the conductor-like screening model (COSMO)) include both intrinsic and extrinsic factors. An increase in the conjugated π-system of organic electron donors leads to an increase in the intrinsic reduction power, but also decreases the solvent stabilization. Hence, intrinsic and extrinsic effects compete against each other; generally the extrinsic effects dominate. We suggest a simple relationship between the redox potential in solution and the gas-phase ionization energy and the volume of an organic electron donor. We finally arrive at formulas that allow for an estimate of the (gas-phase) ionization energy of an electron donor or the (gas-phase) electron affinity of an electron acceptor from the measured redox potentials in solution. The formulas could be used for neutral organic molecules with no or only small static dipole moment and relatively uniform charge distribution after oxidation/reduction.

ChemInform Abstract: Guest‐Induced Emergent Properties in Metal‐Organic Frameworks

AbstractReview: 82 refs.

Urea Azines (Bisguanidines): Electronic Structure, Redox Properties, and Coordination Chemistry

AbstractUrea azines are a largely neglected class of compounds. We show herein that they can easily be synthesized and sublimed at higher temperatures (90–100 °C) without decomposition. Our discussion includes the derivatives N,N′‐diisopropylurea azine (2), tetramethylurea azine (3), and N,N′‐dimethylethyleneurea azine (4) as examples. Vibrational spectroscopy and quantum chemical calculations were used to study their electronic structure in detail. A clear trend in the calculated decomposition to N2 and carbene is found, but the analysis reveals that this trend reflects the stability of the carbene decomposition product rather than changes in the electronic structure of the urea azines. Using cyclic voltammetry (CV) measurements we show that the urea azines are strong organic electron donors, which can be oxidized reversibly in two well‐separated one‐electron steps. The radical salt 4(TCNQ), featuring radical monocations and radical monoanions, which form mixed stacks in the solid state, was prepared by reaction of neutral 4 with tetracyanoquinodimethane (TCNQ). Oxidation of 4 with silver salts Ag+X– (X = BF4 or PF6) was accompanied by dehydrogenation, leading to intensively red‐brown colored radical azoimidazolium dyes. Furthermore, urea azines were used as chelating ligands. In the case of 2, coordination to late transition metals initiates tautomerization. Reaction of 2 with boron hydrides leads to hydrogen elimination and formation of new B,N bi‐heterocyclic ring structures.

Rate and mechanism of the photoreduction of birnessite (MnO2) nanosheets

The photoreductive dissolution of Mn(IV) oxide minerals in sunlit aquatic environments couples the Mn cycle to the oxidation of organic matter and fate of trace elements associated with Mn oxides, but the intrinsic rate and mechanism of mineral dissolution in the absence of organic electron donors is unknown. We investigated the photoreduction of δ-MnO2 nanosheets at pH 6.5 with Na or Ca as the interlayer cation under 400-nm light irradiation and quantified the yield and timescales of Mn(III) production. Our study of transient intermediate states using time-resolved optical and X-ray absorption spectroscopy showed key roles for chemically distinct Mn(III) species. The reaction pathway involves (i) formation of Jahn-Teller distorted Mn(III) sites in the octahedral sheet within 0.6 ps of photoexcitation; (ii) Mn(III) migration into the interlayer within 600 ps; and (iii) increased nanosheet stacking. We propose that irreversible Mn reduction is coupled to hole-scavenging by surface water molecules or hydroxyl groups, with associated radical formation. This work demonstrates the importance of direct MnO2 photoreduction in environmental processes and provides a framework to test new hypotheses regarding the role of organic molecules and metal species in photochemical reactions with Mn oxide phases. The timescales for the production and evolution of Mn(III) species and a catalytic role for interlayer Ca(2+) identified here from spectroscopic measurements can also guide the design of efficient Mn-based catalysts for water oxidation.

Guest-Induced Emergent Properties in Metal-Organic Frameworks.

Metal-organic frameworks (MOFs) are crystalline nanoporous materials comprised of organic electron donors linked to metal ions by strong coordination bonds. Applications such as gas storage and separations are currently receiving considerable attention, but if the unique properties of MOFs could be extended to electronics, magnetics, and photonics, the impact on material science would greatly increase. Recently, we obtained "emergent properties," such as electronic conductivity and energy transfer, by infiltrating MOF pores with "guest" molecules that interact with the framework electronic structure. In this Perspective, we define a path to emergent properties based on the Guest@MOF concept, using zinc-carboxylate and copper-paddlewheel MOFs for illustration. Energy transfer and light harvesting are discussed for zinc carboxylate frameworks infiltrated with triplet-scavenging organometallic compounds and thiophene- and fullerene-infiltrated MOF-177. In addition, we discuss the mechanism of charge transport in TCNQ-infiltrated HKUST-1, the first MOF with electrical conductivity approaching conducting organic polymers. These examples show that guest molecules in MOF pores should be considered not merely as impurities or analytes to be sensed but also as an important aspect of rational design.

Synthesis and photovoltaic response of a solution-processable dithienyldiketopyrrolopyrrole-based molecular semiconductor with thienylvinylthienyl endgroups

We describe the synthesis and preliminary photovoltaic performance of a solution-processable organic small-molecule electron donor DT-DPP(TVT)2 that consists of dithienyldiketopyrrolopyrrole (DT-DPP) as the core and thienylvinylthiophene (TVT) as the endgroups. The new compound is a crystalline solid with a Tm of approximately 216°C. Cyclic voltammetry indicates that DT-DPP(TVT)2 exhibits two quasi-reversible one-electron oxidation waves at ca. 0.68 and 0.90 V versus an Ag/AgCl reference electrode, respectively, leading to an estimated highest occupied molecular orbital (HOMO) level of about −5.08 eV. Introducing the branched 2-hexyldecyl side chain provides DT-DPP(TVT)2 with a high solubility in chloroform up to ca. 36 mg mL−1 at room temperature. Thermal annealing increases the crystallinity of the as-cast film from chloroform solution, thereby rendering slightly red-shifted charge-transfer absorption maxima. Fitting the space-charge-limited current characteristics of the thermally annealed thin film yields an improved hole mobility of ∼2.14×10−4 cm2 V−1 s−1 at low voltages versus ∼1.46×10−4 cm2 V−1 s−1 of the as-cast film. A first characterization of the solar cell [ITO/PEDOT: PSS/DT-DPP(TVT)2: PC61BM/Al] produces a power conversion efficiency of ∼3% with VOC≈0.78 V, JSC≈7.91 mA cm−2, and FF≈48.7%, under simulated AM1.5G with an illumination intensity of 100 mW cm−2. It should be noted that the thermal effect on the thin film absorption of DT-DPP(TVT)2 does not seem to be completely similar to the molecular donor DPP(TFNa)2 reported earlier, which bears 6-fluoronaphthyl endgroups.

Activity and phylogenetic diversity of sulfate-reducing microorganisms in low-temperature subsurface fluids within the upper oceanic crust.

The basaltic ocean crust is the largest aquifer system on Earth, yet the rates of biological activity in this environment are unknown. Low-temperature (<100°C) fluid samples were investigated from two borehole observatories in the Juan de Fuca Ridge (JFR) flank, representing a range of upper oceanic basement thermal and geochemical properties. Microbial sulfate reduction rates (SRR) were measured in laboratory incubations with 35S-sulfate over a range of temperatures and the identity of the corresponding sulfate-reducing microorganisms (SRM) was studied by analyzing the sequence diversity of the functional marker dissimilatory (bi)sulfite reductase (dsrAB) gene. We found that microbial sulfate reduction was limited by the decreasing availability of organic electron donors in higher temperature, more altered fluids. Thermodynamic calculations indicate energetic constraints for metabolism, which together with relatively higher cell-specific SRR reveal increased maintenance requirements, consistent with novel species-level dsrAB phylotypes of thermophilic SRM. Our estimates suggest that microbially-mediated sulfate reduction may account for the removal of organic matter in fluids within the upper oceanic crust and underscore the potential quantitative impact of microbial processes in deep subsurface marine crustal fluids on marine and global biogeochemical carbon cycling.

Substrates specialization in lipid compounds and hydrocarbons of Marinobacter genus.

The impact of petroleum contamination and of burrowing macrofauna on abundances of Marinobacter and denitrifiers was tested in marine sediment mesocoms after 3 months incubation. Quantification of this genus by qPCR with a new primer set showed that the main factor favoring Marinobacter abundance was hydrocarbon amendment followed by macrofauna presence. In parallel, proportion of nosZ-harboring bacteria increased in the presence of marcrofauna. Quantitative finding were explained by physiological data from a set of 34 strains and by genomic analysis of 16 genomes spanning 15 different Marinobacter-validated species (Marinobacter hydrocarbonoclasticus, Marinobacter daeopensis, Marinobacter santoriniensis, Marinobacter pelagius, Marinobacter flavimaris, Marinobacter adhaerens, Marinobacter xestospongiae, Marinobacter algicola, Marinobacter vinifirmus, Marinobacter maritimus, Marinobacter psychrophilus, Marinobacter lipoliticus, Marinobacter manganoxydans, Marinobacter excellens, Marinobacter nanhaiticus) and 4 potential novel ones. Among the 105 organic electron donors tested in physiological analysis, Marinobacter pattern appeared narrow for almost all kinds of organic compounds except lipid ones. Strains of this set could oxidize a very large spectrum of lipids belonging to glycerolipids, branched, fatty acyls, and aromatic hydrocarbon classes. Physiological data were comforted by genomic analysis, and genes of alkane 1-monooxygenase, haloalkane dehalogenase, and flavin-binding monooxygenase were detected in most genomes. Denitrification was assessed for several strains belonging to M. hydrocarbonoclasticus, M. vinifirmus, Marinobacter maritinus, and M. pelagius species indicating the possibility to use nitrate as alternative electron acceptor. Higher occurrence of Marinobacter in the presence of petroleum appeared to be the result of a broader physiological trait allowing this genus to use lipids including hydrocarbon as principal electron donors.

Identification of vibrational excitations and optical transitions of the organic electron donor tetraphenyldibenzoperiflanthene (DBP).

Tetraphenyldibenzoperiflanthene (DBP) attracts interest as an organic electron donor for photovoltaic applications. In order to assist in the analysis of vibrational and optical spectra measured during the formation of thin films of DBP, we have studied the vibrational modes and the electronic states of this molecule. Information on the vibrational modes of the electronic ground state has been obtained by IR absorption spectroscopy of DBP grains embedded in polyethylene and CsI pellets and by calculations using density functional theory (DFT). Electronic transitions have been measured by UV/vis absorption spectroscopy applied to DBP molecules isolated in rare-gas matrices. These measurements are compared with the results of ab initio and semi-empirical calculations. Particularly, the vibrational pattern observed in the S1 ← S0 transition is interpreted using a theoretical vibronic spectrum computed with an ab initio model. The results of the previous experiments and calculations are employed to analyze the data obtained by high-resolution electron energy loss spectroscopy (HREELS) applied to DBP molecules deposited on a Au(111) surface. They are also used to examine the measurements performed by differential reflectance spectroscopy (DRS) on DBP molecules deposited on a muscovite mica(0001) surface. It is concluded that the DBP molecules in the first monolayer do not show any obvious degree of chemisorption on mica(0001). Regarding the first monolayer of DBP on Au(111), the HREELS data are consistent with a face-on anchoring and the absence of strong electronic coupling.