Availability Of Organic Carbon Research Articles

Halophilic microbial formulations for improving crop productivity and soil health under saline Vertisols of Gujarat

A study was carried out during winter (rabi) seasons of 2018 and 2019 at research farm of ICAR-Central Soil Salinity Research Institute, Regional Research Station, Bharuch, Gujarat to find out the effect of various halophilic microbial formulations in combination of organic manure and chemical fertilizers on winter (rabi) wheat (Triticum aestivum L.) productivity under saline Vertisols. Experiment was conducted in a randomized block design (RBD) comprised of 5 treatments, viz. T1 , Un-inoculated + Vermicompost @2.5 t/ha + 100% RDF (recommended dose of fertilizers); T2 , Un-inoculated + Vermicompost @2.5 t/ha + 75% RDF; T3 , Vermicompost @2.5 t/ha + 75% RDF + Halo-Azo inoculation; T4 , Vermicompost @2.5 t/ha + 75% RDF + Halo-PSB inoculation; and T5 , Vermicompost @2.5 t/ha + 75% RDF + Mix of Halo-Azo and Halo-PSB inoculation, replicated thrice. Results showed that application of different halophilic microbial formulations like Halo-Azo (Azotobacter sp. and Bacillus sp.) and Halo-PSB (consortia of Eneterobacter and Brevibacterium sp.) with vermicompost @2.5 t/ha + 75% RDF (recommended dose of fertilizers), provided at par yield with full dose (120 : 60 : 00; N : P : K kg/ha) of fertilizers, thus able to reduce 25% chemical fertilizer dose. Halo-Azo formulation performed better for improving crop yield as compared to Halo-PSB formulation. Combined application of Halo-Azo and Halo-PSB with vermicompost @2.5 t/ha and 75% RDF performed the best and provided significantly higher grain yield (2.75 t/ha) as compared to other treatments. Single and combined application of Halo-Azo and Halo-PSB with vermicompost @2.5 t/ha and 75% RDF also improved soil health parameters and significant results, i.e. declined EC (2.46 dS/m) and pH (7.33), improved organic carbon (0.69%) and nutrient availability (available N: 299.8 kg/ha and P: 28.7 kg/ha) were obtained. Results showed that integration of halophilic microbial formulations with organics and chemical fertilizers was able to improve wheat yield up to 15% than conventional farming under saline Vertisols of Gujarat.

Carbon starvation raises capacities in bacterial antibiotic resistance and viral auxiliary carbon metabolism in soils

Organic carbon availability in soil is crucial for shaping microbial communities, yet, uncertainties persist concerning microbial adaptations to carbon levels and the ensuing ecological and evolutionary consequences. We investigated organic carbon metabolism, antibiotic resistance, and virus-host interactions in soils subjected to 40 y of chemical and organic fertilization that led to contrasting carbon availability: carbon-poor and carbon-rich soils, respectively. Carbon-poor soils drove the enrichment of putative genes involved in organic matter decomposition and exhibited specialization in utilizing complex organic compounds, reflecting scramble competition. This specialization confers a competitive advantage of microbial communities in carbon-poor soils but reduces their buffering capacity in terms of organic carbon metabolisms, making them more vulnerable to environmental fluctuations. Additionally, in carbon-poor soils, viral auxiliary metabolic genes linked to organic carbon metabolism increased host competitiveness and environmental adaptability through a strategy akin to "piggyback the winner." Furthermore, putative antibiotic resistance genes, particularly in low-abundance drug categories, were enriched in carbon-poor soils as an evolutionary consequence of chemical warfare (i.e., interference competition). This raises concerns about the potential dissemination of antibiotic resistance from conventional agriculture that relies on chemical-only fertilization. Consequently, carbon starvation resulting from long-term chemical-only fertilization increases microbial adaptations to competition, underscoring the importance of implementing sustainable agricultural practices to mitigate the emergence and spread of antimicrobial resistance and to increase soil carbon storage.

Biochar and Manure Co-Application Increases Rice Yield in Low Productive Acid Soil by Increasing Soil pH, Organic Carbon, and Nutrient Retention and Availability.

In recent years, overuse of chemical fertilization has led to soil acidification and decreased rice yield productivity in southern China. Biochar and manure co-application remediation may have positive effects on rice yield and improve acid paddy soil fertility. This study was conducted to understand the effects of co-application of wood biochar and pig manure on rice yield and acid paddy soil quality (0-40 cm soil layers) in a 5-year field experiment. The experiment consisted of six treatments: no biochar and no fertilizer (CK); biochar only (BC); mineral fertilizer (N); mineral fertilizer combined with biochar (N + BC); manure (25% manure N replacing fertilizer N) combined with mineral fertilizer (MN); and manure combined with mineral fertilizer and biochar (MN + BC). Total nitrogen application for each treatment was the same at 270 kg nitrogen ha-1y-1, and 30 t ha-1 biochar was added to the soil only in the first year. After five years, compared with N treatments, N + BC, MN, and MN + BC treatments increased the rice yield rate to 2.8%, 4.3%, and 6.3%, respectively, by improving soil organic matter, total nitrogen, and available phosphate under a 0-40 cm soil layer. MN + BC had the strongest resistance to soil acidification among all the treatments. The interaction between fertilizers and biochar application was significant (p < 0.05) in rice yield, soil electrical conductivity (10-20 cm), and soil available phosphate (20-40 cm). Principal component analysis indicated that the effect of manure on soil property was stronger than that of biochar in the 0-40 cm soil layer. The overall rice yield and soil fertility decreased in the order of biochar + mineral fertilizer + manure > mineral fertilizer + manure > biochar + mineral fertilizer > mineral fertilizer > biochar > control. These results suggest that biochar and manure co-application is a long-term viable strategy for improving acid soil productivity due to its improvements in soil pH, organic carbon, nutrient retention, and availability.

Enhancing Native Plant Establishment in Mine Tailings under Drought Stress Conditions through the Application of Organo-Mineral Amendments and Microbial Inoculants

The implementation of phytoremediation strategies under arid and semiarid climates requires the use of appropriate plant species capable of withstanding multiple abiotic stresses. In this study, we assessed the combined effects of organo-mineral amendments and microbial inoculants on the chemical and biological properties of mine tailings, as well as on the growth of native plant species under drought stress conditions. Plants were cultivated in pots containing 1 kg of a mixture of mine tailings and topsoil (i.e., pre-mined superficial soil) in a 60:40 ratio, 6% marble sludge, and 10% sheep manure. Moreover, a consortium of four drought-resistant plant growth-promoting rhizobacteria (PGPR) was inoculated. Three irrigation levels were applied: well-watered, moderate water deficit, and severe water deficit, corresponding to 80%, 45%, and 30% of field capacity, respectively. The addition of topsoil and organo-mineral amendments to mine tailings significantly improved their chemical and biological properties, which were further enhanced by bacterial inoculation and plants’ establishment. Water stress negatively impacted enzymatic activities in amended tailings, resulting in a significant decrease in acid and alkaline phosphatases, urease, and dehydrogenase activities. Similar results were obtained for bacteria, fungi, and actinomycete abundance. PGPR inoculation positively influenced the availability of phosphorus, total nitrogen, and organic carbon, while it increased alkaline phosphatase, urease (by about 10%), and dehydrogenase activity (by 50%). The rhizosphere of Peganum harmala showed the highest enzymatic activity and number of culturable microorganisms, especially in inoculated treatments. Severe water deficit negatively affected plant growth, leading to a 40% reduction in the shoot biomass of both Atriplex halimus and Pennisetum setaceum compared to well-watered plants. P. harmala showed greater tolerance to water stress, evidenced by lower decreases observed in root and shoot length and dry weight compared to well-watered plants. The use of bioinoculants mitigated the negative effects of drought on P. harmala shoot biomass, resulting in an increase of up to 75% in the aerial biomass in plants exposed to severe water deficit. In conclusion, the results suggest that the combination of organo-mineral amendments, PGPR inoculation, and P. harmala represents a promising approach to enhance the phytoremediation of metal-polluted soils under semiarid conditions.

Depth-Wise Distribution of Soil Chemical Properties, Micro-nutrients Status, and Bacterial Population under Quercus leucotrichophora and Shorea robusta Forest of Chakrata and Thano Region of Uttarakhand

Forest trees have an appreciable demand for nutrients as they have longer rotation than crops and this is easily replenished by the constant release of nutrients resulting from weathering under favorable conditions in the soils developed from parent material rich in nutrient-bearing minerals. A study was undertaken to assess the chemical properties, micro-nutrient status, and bacterial population; two sites were taken for the collection of soil samples: the oak forest of Chakrata and the Sal forest of Thano. Soils were drawn at three depths viz. 0-30 cm, 30-60 cm, 60-90 cm. All soil parameters examined at three depths viz. 0-30 cm, 30-60 cm, 60-90 cm. Oak (Quercus Leucotrichophora) forests have higher microbial activity than Sal forests. The soil in both the studied areas was rich in nutrients, where, the maximum mean standard deviation values of pH (6.85), soil organic carbon (5.9 %), available nitrogen (0.04 %) reported in the Oak forest of Chakrata, and available phosphorus were almost similar in both forest regions. Oak forests have higher organic carbon, water-holding capacity, and nutrient availability compared to Sal forests. However, it is concluded that, for better conditions of these forests for soil and carbon-storing potential, the forest needs good management practices, especially in community forest areas to avoid illegal felling, impact of fire, and over-exploitation of fuel and fodder. Good management practices would help mitigate the impact of climate change and sustainable outcomes of the resources for the community's benefit.

Optimization of a Chlorella–Saccharomyces co–culture system for enhanced metabolite productivity

Microalgae and yeast co–culture systems are gaining interest as a promising method for higher production of biomass and metabolites. However, because these organisms have particular cultivation requirements, optimization of culture conditions is needed for suitable growth and productivity of the co–culture. This work examines the effects of cultivation media macronutrient composition on the growth and metabolite production of co–cultures of either Chlorella vulgaris or Chlorella sorokiniana with a strain of Saccharomyces cerevisiae. Specifically, the consequence of glucose, yeast extract and peptone supplementation on the physiological responses of the co–culture system was investigated. The co–culture responses were equivalent for both Chlorella species, although C. sorokiniana could maintain a more stable population ratio with yeast. The addition of glucose with peptone significantly enhanced biomass production of the co–culture by approximately 2–fold in comparison to microalgae or yeast monocultures, while the addition of glucose alone or in combination with yeast extract did not exhibit the same effect. An approximately 3–fold increase in lipid content was observed in the co–culture samples under glucose–only supplementation, where yeast growth was restricted. The addition of glucose and yeast extract enhanced the growth of yeast monocultures, but this did not benefit the co–culture. Fourier transform infrared spectroscopy analysis revealed different metabolic fingerprints of the monoculture and the co–culture samples grown in glucose and peptone containing medium, which indicated higher abundance of metabolites including lipids, proteins, carbohydrates in the co–culture samples. Specifically, total protein yields in the co–cultures were increased by 1.6– to 1.7–fold in comparison to microalgae monoculture while total lipid yields were increased by 3.6– to 5.1–fold in the co–cultures. This work highlights the importance of organic carbon and nitrogen availability for microalgae–yeast co–culture growth and their potential for a wide range of valuable applications including nutritional and bioenergy uses.

Denitrifier Still Has the Important Role in Nitrate Reduction to N2 Although It is Not the Predominant Population in the Estuarine Bacterial Community of Nitrate Reducing Bacteria

Denitrification and nitrate-ammonification are the responsible processes for nitrate removal in the estuaries. Temperature, nitrate and organic carbon availability are key factors controlling a rate of the nitrate reduction processes. This mixed cultures chemostat study investigates the competition ability and their nitrate reduction end-products of the bacteria isolated from an estuary at different temperatures. This study will help us to understand the seasonal nitrate reduction processes in an estuary. The experiments showed that a nitrate-ammonifier was the predominant process in the steady-state chemostat at high temperature. While a facultative denitrifier-nitrate ammonifier was the predominant process at low temperature. However, the main end products of nitrate reduction at high temperature were up to 61% N2 indicating a denitrifier still had an important role in the end products of nitrate reduction in the estuary. The data also showed that a nitrite respiring bacterium reduced nitrite to N2, that responsible for approximately 6-9% of total N2 produced in the culture. This study confirmed that nitrate ammonifiers out-compete denitrifiers at high temperature, however, denitrifiers still had an important role in end products of nitrate reduction.

Eleven-year soil fertility changes in Dinogeng agricultural extension area of Kgatleng District in Botswana

This study was conducted in Dinogeng Agricultural Extension Area (DAEA) in the Kgatleng District located in the eastern part of Botswana. The objective of the study was to assess soil fertility changes over an eleven-year period (2009–2020) in the extension area. In the meantime, the Integrated Support Programme for Arable Agricultural Development (ISPAAD) was launched and is continuing. Soil test data of 18 arable-farming sites for the period after inception of ISPAAD in 2009 until 2020 was obtained from the Department of Agricultural Research Soil Analytical Laboratory and Ministry of Agriculture. Geographical coordinates of the ploughing fields were taken during field work using a Geographical Positioning System (GPS). Based on availability of information, soil reaction (pH), Organic carbon (OC) and Cation Exchange Capacity (CEC) of soils for the 18 arable-farming sites were compared with data acquired from National Soil Map of Botswana (1988), scale 1: 250 000. The results showed an average significant decline of 1.55 for soil pH (P &lt; 0.05), 0.16 % for OC (P &lt; 0.01) and 6.75 Cmol/kg for CEC (P &lt; 0.01). Farming practices have however, undergone some remarkable transformation including the use of fertilizers for replacing nutrient loses. The findings from this study may be useful to guide the development of functional soil fertility management plan for Dinogeng Agricultural Extension Area.

Iron limitation of heterotrophic bacteria in the California Current System tracks relative availability of organic carbon and iron.

Iron is an essential nutrient for all microorganisms of the marine environment. Iron limitation of primary production has been well documented across a significant portion of the global surface ocean, but much less is known regarding the potential for iron limitation of the marine heterotrophic microbial community. In this work, we characterize the transcriptomic response of the heterotrophic bacterial community to iron additions in the California Current System, an eastern boundary upwelling system, to detect in situ iron stress of heterotrophic bacteria. Changes in gene expression in response to iron availability by heterotrophic bacteria were detected under conditions of high productivity when carbon limitation was relieved but when iron availability remained low. The ratio of particulate organic carbon to dissolved iron emerged as a biogeochemical proxy for iron limitation of heterotrophic bacteria in this system. Iron stress was characterized by high expression levels of iron transport pathways and decreased expression of iron-containing enzymes involved in carbon metabolism, where a majority of the heterotrophic bacterial iron requirement resides. Expression of iron stress biomarkers, as identified in the iron-addition experiments, was also detected insitu. These results suggest iron availability will impact the processing of organic matter by heterotrophic bacteria with potential consequences for the marine biological carbon pump.

Ammonium loss microbiologically mediated by Fe(III) and Mn(IV) reduction along a coastal lagoon system

Anaerobic ammonium oxidation, associated with both iron (Feammox) and manganese (Mnammox) reduction, is a microbial nitrogen (N) removal mechanism recently identified in natural ecosystems. Nevertheless, the spatial distributions of these non-canonical Anammox (NC-Anammox) pathways and their environmental drivers in subtidal coastal sediments are still unknown. Here, we determined the potential NC-Anammox rates and abundance of dissimilatory metal-reducing bacteria (Acidomicrobiaceae A6 and Geobacteraceae) at different horizons (0–20 cm at 5 cm intervals) of subtidal coastal sediments using the 15N isotope-tracing technique and molecular analyses. Sediments were collected across three sectors (inlet, transition, and inner) in a coastal lagoon system (Bahia de San Quintin, Mexico) dominated by seagrass meadows. The positive relationship between 30N2 production rates and dissimilatory Fe and Mn reduction provided evidence for Feammox’s and Mnammox’s co-occurrence. N loss through NC-Anammox was detected in subtidal sediments, with potential rates of 0.07–0.62 μg N g−1 day−1. NC-Anammox process in vegetated sediments tended to be higher than those in adjacent unvegetated ones. NC-Anammox rates showed a subsurface peak (between 5 and 15 cm) in the vegetated sediments but decreased consistently with depth in the adjacent bare bottoms. Thus, the presence/absence of seagrasses and sediment characteristics, particularly the availability of organic carbon and microbiologically reducible Fe(III) and Mn(IV), affected the abundance of dissimilatory metal-reducing bacteria, which mediated NC-Anammox activity and the associated N removal. An annual loss of 32.31 ± 3.57 t N was estimated to be associated with Feammox and Mnammox within the investigated area, accounting for 2.8–4.7% of the gross total import of reactive N from the ocean into the Bahia de San Quintin. Taken as a whole, this study reveals the distribution patterns and controlling factors of the NC-Anammox pathways along a coastal lagoon system. It improves our understanding of the coupling between N and trace metal cycles in coastal environments.

Long-term conversion of upland to paddy increased SOC content and N availability in a sand dune of Japan

Land use change driven by anthropogenic activities has greatly affected terrestrial C and N cycling; however, it remains unclear how dynamics of soil organic carbon (SOC) and nitrogen (N) availability respond to long-term land use change in sand dunes. Here, we investigated the changes in SOC, total nitrogen (TN), and their aerobic and anaerobic decomposition or mineralization in a vinyl film paddy, compared with dry land use and management changes (LUMCs) (original upland, greenhouse, and agricultural forest (tree area)) in Shonai sand dunes, northeast Japan. The vinyl film paddy had been singly cultivated for 54 years. Soil samples were collected from five soil depths (0–10, 10–20, 20–30, 30–40, 40–50 cm) to compare the effects of depth and LUMC among the four treatments. The C decomposition (Dec-C) was assessed as the aerobic CO2 production and anaerobic methane and CO2 productions. Meanwhile, N mineralization (Min-N) was determined as aerobic NH4+ and NO3– production and anaerobic NH4+ production. The results showed that the vinyl film paddy increased SOC and TN contents, Dec-C and Min-N than upland and greenhouses at 0–30 cm depth but lower levels than the tree area at all depths. The arithmetic mean for all depths showed the aerobic Dec-C in the paddy (216.0 mg kg−1) was higher than the corresponding anaerobic Dec-C (192.8 mg kg−1). Conversely, the aerobic Min-N (35.9 mg kg−1) was lower than the anaerobic Min-N (75.7 mg kg−1). There were significantly positive correlations among SOC, TN, aerobic and anaerobic Dec-C and Min-N, whereas the paddy had steeper slope than other three LUMCs. Conclusively, our results indicated that long-term conversion of upland to vinyl film paddy increased SOC and TN accumulation and N availability (Min-N) in Shonai sand dunes, which can be applied as an effective agricultural practice to improve fertility of coastal sandy soils.

Detection and Characterization of Active Microbial Cells in Salt Cavern Brine

Salt caverns have been used for decades as natural gas storage facilities and are now target of large-scale underground H2 storage to secure national energy transition goals. Contrary to CH4, H2 is a universal electron donor for microbial anaerobic respiration. Suitable electron acceptors are sulfate and carbonate, which dissolve from gypsum, anhydrite and lime that can make up 10 % of subsurface salt formations. Whilst sulfate reduction is inherently linked to the formation of H2S, microbial CO2 reduction can generate acetate, which can be used as carbon source by diverse microorganisms. Thus, supporting other microbial side effects, such as H2S formation, clogging and H2 consumption. However, microbial diversity and activity in salt caverns are selectively controlled by salt concentrations close to saturation and limited availability of organic carbon. If these conditions allow for microbial activity was investigated in our study. To circumvent long enrichment times associated with high salinity and limited nutrient availability, we used a stable isotope labelling approach combined with nano-scale secondary ion mass spectrometry analysis (SIP-nanoSIMS) to investigate H2-dependant microbial activity in two brine samples and compared them with that of an extremely halophilic enrichment culture (MP-32). Heavy carbonate and water (13CO2 and 2H2O) served as tracers for microbial activity. Microbial H2 consumption was additionally investigated in microcosm experiments with brine and rock salt over a period of 200 days. Setups with MP-32 served as a positive control. Subsequently, MP-32 was selected for metagenome sequencing to explore potential metabolic pathways and strategies for osmoadaptation. Analysis of the microbial community composition in brine revealed that members of the Desulfohalobiaceae, Halobacteria and Halanaerobiales were present in all caverns and their relative abundance increased during incubation with H2 as electron donor although sulfate reduction was not observed. But incubation with H2 resulted in an increased uptake of 13C from 13CO2 in 1.6 to 3.6 % of the cells compared to incubations without H2. Uptake of 2H from 2H2O was detected in 20 to 30 % of the cells and was higher when H2 was not offered as an electron donor. Similar results were obtained from the enrichment culture MP-32, which was grown in medium with reduced salinity compared to the salt cavern brine. Uptake of 13C was 10-fold higher when incubated with H2 and nearly all cells incorporated 2H with and without H2. A total of eight metagenome-assembled genomes (MAGs) with a completion of more than 90 % could be recovered from MP-32. Two of them belonged to Desulfohalobiaceae and can be characterized as autotrophic sulfate reducers by means of the Acetyl-Coenzyme A pathway that compensate osmotic stress by synthesizing small organic molecules. Collectively, our findings provide a new approach to study microbial activity that is strongly impacted by high salinity and an improved understanding of their genomic potential.

Electron flux is a key determinant of uranium isotope fractionation during bacterial reduction

Uranium isotopic signatures in the rock record are utilized as a proxy for past redox conditions on Earth. However, these signatures display significant variability that complicates the interpretation of specific redox conditions. Using the model uranium-reducing bacterium, Shewanella oneidensis MR-1, we show that the abundance of electron donors (e.g., labile organic carbon) controls uranium isotope fractionation, such that high electron fluxes suppress fractionation. Further, by purifying a key uranium-reducing enzyme, MtrC, we show that the magnitude of fractionation is explicitly controlled by the protein redox state. Finally, using a mathematical framework, we demonstrate that these differences in fractionation arise from the propensity for back-reaction throughout the multi-step reduction of hexavalent uranium. To improve interpretations of observed fractionations in natural environments, these findings suggest that a variable intrinsic fractionation factor should be incorporated into models of uranium isotope systematics to account for differences in electron flux caused by organic carbon availability.

Soil Carbon Storage in Forest and Agriculture Land Use in the Tanralili Watershed

Soil is a long-term store of carbon in terrestrial ecosystems and plays an important role in the global carbon cycle. Sequestration of soil organic carbon is considered as one of the climate change mitigation strategies and is related to carbon storage in the soil. This study aims to determine soil carbon storage based on land use in forest areas and dry land agriculture in the Tanralili watershed.Soil samples were taken at a depth of 0-10 cm, 10-20 cm, and 20-30 cm, repeated three times in succession purposive sampling on the use of forest land and dry land agriculture. Soil chemical properties observed are bulk density, soil organic carbon, nitrogen, and C:N ratio. Research results show that soil carbon storage is higher in forest land use compared to dry land farming. Forest land with mixed tree crop species had the highest carbon store, namely 96 tons/ha, while dry land with horticultural crop types rotated with various crops had the lowest carbon store, namely 43 tons/ha. Soil carbon accumulation is most abundant in the topsoil layer of 0-10 cm. The availability of soil organic carbon can be seen from the C:N ratio, increasing C:N will reduce the ability to absorb soil carbon.

Large-stream nitrate retention patterns shift during droughts: Seasonal to sub-daily insights from high-frequency data-model fusion.

High-frequency nitrate-N (NO3--N) data are increasingly available, while accurate assessments of in-stream NO3--N retention in large streams and rivers require a better capture of complex river hydrodynamic conditions. This study demonstrates a fusion framework between high-frequency water quality data and hydrological transport models, that (1) captures river hydraulics and their impacts on solute signal propagation through river hydrodynamic modeling, and (2) infers in-stream retention as the differences between conservatively traced and reactively observed NO3--N signals. Using this framework, continuous 15-min estimates of NO3--N retention were derived in a 6th-order reach of the lower Bode River (27.4km, central Germany), using long-term sensor monitoring data during a period of normal flow from 2015 to 2017 and a period of drought from 2018 to 2020. The unique NO3--N retention estimates, together with metabolic characteristics, revealed insightful seasonal patterns (from high net autotrophic removal in late-spring to lower rates, to net heterotrophic release during autumn) and drought-induced variations of those patterns (reduced levels of net removal and autotrophic nitrate removal largely buffered by heterotrophic release processes, including organic matter mineralization). Four clusters of diel removal patterns were identified, potentially representing changes in dominant NO3--N retention processes according to seasonal and hydrological conditions. For example, dominance of autotrophic NO3--N retention extended more widely across seasons during the drought years. Such cross-scale patterns and changes under droughts are likely co-determined by catchment and river environments (e.g., river primary production, dissolved organic carbon availability and its quality), which resulted in more complex responses to the sequential droughts. Inferences derived from this novel data-model fusion provide new insights into NO3- dynamics and ecosystem function of large streams, as well as their responses to climate variability. Moreover, this framework can be flexibly transferred across sites and scales, thereby complementing high-frequency monitoring to identify in-stream retention processes and to inform river management.

Enhancing carotenoid production and exploring the potential use of microalga Desmodesmus cf. pleiomorphus DSHM22 as a biodiesel feedstock through photoheterotrophic cultivation

Improving biomass and value-added compound production is crucial for the industrial application of microalgae, achieved through the utilization of low-cost nutrients and various cultivation modes. This study aimed to enhance the biomass and biochemical production of the indigenous microalgae by comparing different cultivation modes. Among six algal strains obtained from the East Sea in South Korea, Desmodesmus cf. pleiomorphus DSHM22 exhibited the highest biomass productivity (0.0118 g L−1 d−1) and was selected for optimization. Algal growth responses were assessed under four commercially available soluble fertilizer media to identify a cost-effective nutrient substrate. The most effective fertilizer demonstrated 2.2-fold higher growth compared to the BG-11 algal medium after 14 days. Glucose was supplemented in the culture medium to evaluate organic carbon availability under light and dark conditions. While no growth responses were observed under glucose-supplemented dark condition, the highest biomass production (approximately 1.22 g L−1) was achieved under glucose-supplemented light condition. The algal strain showed growth under both photoautotrophic (PA) and photoheterotrophic (PH) conditions, excluding the heterotrophic mode. Biochemical accumulations were compared by analyzing photosynthetic pigments and fatty acids under both PA and PH modes. The algal strain effectively produced lutein, neoxanthin, and omega-3, 6, and 9 fatty acids. Although PH condition yielded significantly higher biochemicals and lipid production compared to PA condition, both culture conditions exhibited similar fatty acid compositions and biodiesel properties. This study suggests that PH cultivation is an effective approach for producing value-added biochemicals and biodiesel using microalga D. cf. pleiomorphus DSHM22.

Effects of ammonia nitrogen and organic carbon availability on microbial community structure and ecological interactions in a full-scale partial nitritation and anammox (PN/A) system

Nutrient availability significantly impacts microbial biosynthesis, cell growth, and cell cycle progression. In this study, a full-scale plug-flow partial nitritation/anammox (PN/A) system was used to investigate variations in the microbial community structure in both immobilized carriers and flocs, as well as a gradual decrease in nutrient availability from upstream to downstream. We found that reduced ammonia nitrogen (from 150.4 to 30.6 mg/L) and organic carbon (from 415.7 to 342.8 mg/L) availability significantly lowered microbial diversity and altered microbial communities in biofilms other than flocs from upstream to downstream. The abundance of all anammox bacteria increased by 1.97 times, from 3.25×1010 to 6.40×1010 copies per gram of wet sludge, in the biofilm core microbiome. Furthermore, from upstream to downstream, taxa with lower ribosomal RNA operon copy numbers were consistently enriched in both biofilm and floc communities, indicating that slow-growing microorganisms are more likely to be enriched in low-nutrient environments. Rare taxa with a relative abundance of less than 0.1% exhibited unique metabolic functions, including amino acid, carbohydrate, cofactor, and vitamin metabolisms, which was inferred by PICRUST2 and persisted across the nutrient gradient in both the biofilm and floc communities. Despite their low abundance, they may play important roles in mediating the stability and function of the PN/A system. Overall, the results demonstrate the impact of a naturally formed ammonia nitrogen and organic carbon gradient in a full-scale plug-flow PN/A installation on nutrient availability and its effects on microbial diversity, community composition, and microbial interactions, which expands our fundamental understanding of this energy-efficient and promising biotechnology for treating high-strength ammonium wastewater.

Soil microbial community characteristics and the influencing factors at different elevations on the eastern slope of Helan Mountain, Northwest China.

As an important bridge connecting aboveground communities and belowground biological processes, soil microorganisms play an important role in regulating belowground ecological processes. The altitudinal changes and driving factors of soil microbial community in mountain ecosystem in arid region are still unclear. We measured soil physicochemical properties at seven altitudes in the range of 1300-2800 m in Helan Mountains, and investigated the understory community composition, soil physicochemical properties, and soil microbial community. The driving factor for soil microbial community was explored by variance partitioning analysis and redundancy analysis. The results showed that the total amount of soil microorganisms and bacterial biomass first increased and then decreased with the increases of altitude, fungi, actinomyces, arbuscular mycorrhizal fungi, Gram-positive bacteria, and Gram-negative bacteria groups showed a gradual increase. The variation of fungal-to-bacterial ratio (F/B) along the altitude showed that the cumulative ability of soil bacteria was stronger than that of fungi at low altitudes, while the pattern is opposite at high altitudes. The ratio of Gram-positive bacteria to Gram-negative bacteria (GP/GN) showed an overall decreasing trend with the increases of altitude, indicating that soil bacteria and organic carbon availability changed from "oligotrophic" to "eutrophication" and from "low" to "high" transition as the altitude increased. Vegetation properties, soil physical and chemical properties jointly accounted for 95.7% of the variation in soil microbial community. Soil organic carbon (SOC), soil water content (SWC), and total nitrogen (TN) were significantly correlated with soil microbial community composition. Our results revealed the distribution pattern and driving factors of soil microbial communities at different elevations on the eastern slope of Helan Mountain, which would provide theoretical basis and data support for further understanding the interaction between plant-soil-microorganisms in arid areas.

Comparison of microbial colonization between natural and plastic substrata in a polluted watershed.

Plastic pollution represents a threat for biological communities and the ecological functions they provide in river ecosystems. In this study, we compared the microbial colonization of two plastics (biodegradable and non-biodegradable) and three natural substrata (leaves, sediment and rocks) in two study sites of an urbanized watershed differing in their plastic-contamination degree (upstream and downstream). The density and diversity of bacterial, fungal and algal communities, as well as the extracellular enzymatic activities β-glucosidase (GLU), N-acetyl-glucosaminidase (NAG) and phosphatase (PHO), were analyzed in each substrata and site over a four-week colonization experiment. Results showed higher microbial densities and enzymatic activities in leaves and sediment compared to plastics and rocks, probably due to the greater availability of organic carbon and nutrients in the former substrata. However, the microbial colonization of the two plastics was only different in the downstream site where bacterial density and enzymatic activities were higher in the biodegradable compared to the non-biodegradable plastic. Accordingly, the presence of biodegradable plastics would enhance the heterotrophic metabolism in plastic-polluted rivers.

Cover cropping impacts on soil water and carbon in dryland cropping system.

Incorporating cover crops into the rotation is a practice applied across many parts of the globe to enhance soil biological activities. In dryland farming, where crop production is highly dependent on rainfall and soil water storage, cover cropping can affect soil water, yet its effects on soil hydrological and biological health require further investigation. The objective of this study was to evaluate the effect of different timing of summer sorghum cover crop termination on soil water, total and labile organic carbon, arbuscular mycorrhizal fungi and their mediating effects on wheat yield. Through on-farm trial, soil characteristics along with wheat biomass, yield and grain quality were monitored. In comparison with the control (fallow), the early terminated cover crop was the most effective at retaining greater soil water at wheat sowing by 1~4% in 0-45cm soil profile. An increase in water use efficiency, yield and grain protein by 10%, 12% and 5% was observed under early termination. Under late terminated summer cover crop, there was 7% soil water depletion at wheat planting which resulted in 61% decline in yield. However, late-terminated cover crop achieved the greatest gain in soil total and particulate organic carbon by 17% and 72% and arbuscular mycorrhizal fungal Group A and B concentration by 356% and 251%. Summer cover crop incorporation resulted in a rapid gain in labile organic carbon, which constituted hotspots for arbuscular mycorrhizal fungi growth, conversely, fungal activities increased labile organic carbon availability. The combined effect of increased soil water at sowing and over the growing season, organic carbon, and microbial activities contributed to greater yield. The findings suggest that summer cover cropping with timely termination can have implications in managing soil water at sowing time and enhancing soil water storage during the season, soil carbon, and facilitating microbial activities while enhancing productivity in the dryland cropping system.