The giant gold deposit Muruntau in most works belongs to the “orogenic type”. However, in the description of the geology of the deposit, there is usually no information about the stages (deformation, metamorphism) and the role of regional processes in the formation of host and mineralized rocks of the deposit. Our fieldwork provides unique geological evidence and previously unpublished data that are not reported in any other publications to date. This article presents the results of a detailed structural study of the terrane hosting the Muruntau gold deposit on the example of four sites and the results of deep drilling of two wells. The conducted studies confirm that the lowest Muruntau megaterrane consists of multi-stage metamorphosed Neoproterozoic–Early Paleozoic sedimentary-volcanic rocks and Late Paleozoic carbonate sediments overlain by Late Carboniferous flysch and olistostrome in the top. Two main stages (D1 and D2) of rock deformation in the lower part of the megaterrane associated with the Early Paleozoic accretion and two subsequent stages (D3 and D4) associated with the Late Paleozoic accretion and orogeny are described. Thrust processes D2 and D3 caused the formation of recumbent folds of different orientation and vergence. The normal antiform (D4) extending W–E is an orogenic fold. The Muruntau gold deposit is located in a regional synmetamorphic thrust zone called the Main Muruntau Thrust (MMT), which formed during the Early Paleozoic D2 stage. The MMT is responsible for the formation of secondary rock anisotropy along the cleavage of the D2 recumbent folds and conformal lens-like body of mineralized rocks and gently sloping veins with an area of 7.0 × 2.6 km. The internal structure of the deposit retains fragments of deformed gold quartz veins into recumbent folds. These structural data make it possible to link low-grade gold mineralized zones with Early Paleozoic deformations. We suggest that rock anisotropy within the MMT controlled mineralization twice: in the Early Paleozoic as a synmetamorphic flat high-permeable zone and in the Late Paleozoic as a relatively low-permeable zone for post-magmatic fluids.
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