In order to solve the influence of the complex interaction relationships among subjects on the system solution accuracy and speed of the Multi-Microgrid system under the high penetration rate of new energy. Firstly, the paper establishes the bi-level optimal scheduling Stackelberg game model based on shared energy storage, considering the inter-subject interaction in MMG. Subsequently, based on the four improvement methods of Chaotic Map, Quantum Behavior, Gaussian Distribution, and Nonlinear Control Strategy, the Chaotic Gaussian Quantum Crayfish Optimization Algorithm is proposed to solve the optimization scheduling model. The improved algorithm exhibits superior initial solutions and enhanced search capability. In comparison to the original algorithm, the relative errors of the CGQCOA optimization outcomes are 98%, 20.96%, 98.74% and 16.55%, respectively, enhancing the model-solving accuracy and the speed of convergence to the optimal solution. Finally, the simulation demonstrates that the revenue of Microgrid 1, Microgrid 2, and Microgrid 3 have increased by 0.73%, 1.17%, and 1.04%, respectively. Concurrently, the penalty cost of pollutant emission has decreased by 5.9%, 11.5%, and 12.68%, respectively. Furthermore, the revenue of the shared storage have increased by 1.91%. These findings validate the efficacy of the methodology proposed in enhancing the revenue of the various subjects and reducing pollutant gas emission.