Physics learning should be oriented towards students, whereas physics learning oriented towards teachers make students as passive object thus they train less critical thinking skills in process of forming and concept analysis of physics. This study aims to know the effect of inductive learning model assisted mindmap MindJet MindManager towards critical thinking skills of students in learning physics on topic optical eye. This study is a quasi experimental with one group pretest – posttest design. This study was carried out in senior high school state 6 Yogyakarta. 33 students of second grade of mathematics and science major first class are chosen as our subject research based on the recommendation of a teacher that students in that class have sufficient academic potential with consideration if students with good academic potential are given good learning, they are expected will also get good result. We used essay questions as test and instrument in gathering technique. Thus, we analyzed the data using pair sample t test. The result of data analysis shows Sig. (2-tailed) 0.032 on pair sample t test. There is a difference in critical thinking skills of students between before and after experiment of physics learning with inductive learning model assisted mindmap MindJet MindManager. We conclude that mindmap inductive learning model assisted MindJet MindManager influences critical thinking skills of students.