Coastal regions are the main populated areas in the world and the effectiveness of Marine Protected Areas (MPAs) depends on management, stakeholder engagement, and environmental settings, which differ across land-to-sea gradients. This study describes the patterns of biological diversity and the abiotic environment along a densely inhabited stretch of the Brazilian coastline. We examined sea surface temperature and chlorophyll-a concentrations among urbanized coasts, inshore, and open water zones. Locally, we considered sites under contrasting protection status (partially restrictive MPA, multiple-use MPA, and no protection areas), the impact of sedimentation, the structure of sessile (algae, corals, and other invertebrates) and fish communities (abundance and diversity). Urban coastal sites are dominated by filamentous turfs (∼55 % coverage), exhibit high sedimentation rates (mean ∼180 mg/cm2/day), and low fish diversity (mean below 9 species/60m2). Open water zones have higher benthic and fish diversity. The highest biomass of fishes (mean ∼575 g/m2) as well as native corals (mean ∼13 %) and calcareous algal turf abundance (mean ∼38 %) was observed in the Alcatrazes archipelago, which increased its no-take MPA limits recently. In an unmanaged multiple-use protected Island, reefs were dominated by the invasive sun coral Tubastraea spp. The expansion of this alien coral is a real threat to the regional biodiversity, and its risk should be considered in management practices, which is done in the Alcatrazes archipelago. Our analysis demonstrates that effective management of multiple-use coastal settings may need to include flexible approaches that include land-based management, which can complement MPA tools to protect and conserve biodiversity. Since the region is considered a hotspot of cumulative impacts, ecosystem quality of the Alcatrazes archipelago could be considered substantially better than expected, being a bright spot of conservation. The expansion of its no-take area might help the role of MPAs within a comprehensive global conservation strategy.
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