Open Regions Research Articles

Sirtuin 1 regulates the phenotype and functions of dendritic cells through Ido1 pathway in obesity

Sirtuin 1 (SIRT1) is a class III histone deacetylase (HDAC3) that plays a crucial role in regulating the activation and differentiation of dendritic cells (DCs) as well as controlling the polarization and activation of T cells. Obesity, a chronic inflammatory condition, is characterized by the activation of immune cells in various tissues. We hypothesized that SIRT1 might influence the phenotype and functions of DCs through the Ido1 pathway, ultimately leading to the polarization towards pro-inflammatory T cells in obesity. In our study, we observed that SIRT1 activity was reduced in bone marrow-derived DCs (BMDCs) from obese animals. These BMDCs exhibited elevated oxidative phosphorylation (OXPHOS) and increased extracellular acidification rates (ECAR), along with enhanced expression of class II MHC, CD86, and CD40, and elevated secretion of IL-12p40, while the production of TGF-β was reduced. The kynurenine pathway activity was decreased in BMDCs from obese animals, particularly under SIRT1 inhibition. SIRT1 positively regulated the expression of Ido1 in DCs in a PPARγ-dependent manner. To support these findings, ATAC-seq analysis revealed that BMDCs from obese mice had differentially regulated open chromatin regions compared to those from lean mice, with reduced chromatin accessibility at the Sirt1 genomic locus in BMDCs from obese WT mice. Gene Ontology (GO) enrichment analysis indicated that BMDCs from obese animals had disrupted metabolic pathways, including those related to GTPase activity and insulin response. Differential expression analysis showed reduced levels of Pparg and Sirt1 in BMDCs from obese mice, which was challenged and confirmed using BMDCs from mice with conditional knockout of Sirt1 in dendritic cells (SIRT1∆). This study highlights that SIRT1 controls the metabolism and functions of DCs through modulation of the kynurenine pathway, with significant implications for obesity-related inflammation.

Municipal Solid Waste Management System: A Study of Aligarh City, Uttar Pradesh, India

Municipal solid waste management (MSWM) is a significant environmental challenge in Indian cities, including Aligarh. Inadequate handling of municipal solid waste (MSW) poses risks to public health and the environment. Studies indicate that approximately 90% of MSW in India is improperly disposed of in open dumps and landfills, leading to various ecological and health issues. A detailed examination of Aligarh's waste management system was conducted to assess the quantity, characteristics, and sustainable management options for its municipal waste. Findings from the study show that private collectors handle about 430 tons of waste per day in Aligarh, but neither residents nor collectors engage in waste segregation at the source. The combined collection efficiency of A2Z Private Limited and the Aligarh Municipal Corporation is estimated to be around 70%. Due to the high organic content in the waste, its energy potential remains untapped. Currently, about 80% of the collected waste is disposed of in open dumps, as Aligarh lacks a sanitary landfill. This study highlights the current state of municipal solid waste management in Aligarh focusing on the quantity, quality, and management strategies in Aligarh. Methodology: For this study, Aligarh, a medium-sized city with a population of roughly 8.7 lakhs, which is located 130 kilometres from Delhi, India's capital, was chosen. A thorough assessment of the literature was done to create a theoretical framework. Visits to fields were carried out to gather basic data and comprehend the city's SWMS, including interaction During interviews with several municipality employees and executives in charge of SWM and citizens of the city. A procedure was created to examine the sources, calculate the amounts, and ascertain the waste streams' makeup. Findings: Despite their best efforts, the local municipality's limited resources do not allow for the effectiveness of the solid waste management system in Aligarh. On the outskirts of the city, waste is frequently disposed of in open or low-lying regions without using the correct scientific or engineering techniques.

Tourism Industry of the Guangdong-Hong Kong-Macao Greater Bay Area

In the context of global economic integration and increasingly strengthened regional cooperation, the Guangdong-Hong Kong-Macao Greater Bay Area (GBA) has emerged as one of China's most economically dynamic and open regions, with its strategic development position becoming ever more prominent. On February 18, 2019, the Outline of the Development Plan for the Guangdong-Hong Kong-Macao Greater Bay Area was issued by the Chinese central government, which is the core policy of my research. As an important bridge to promote economic and cultural exchanges and enhance mutual understanding among people, the development of tourism directly affects the overall image and international influence of the Guangdong-Hong Kong-Macao Greater Bay Area. At present, Guangdong focuses on building the GBA into a world-class tourist destination. As China’s largest source of tourists and an important destination, the quality and efficiency of tourism development in the Guangdong-Hong Kong-Macao Greater Bay Area continue to improve. This paper takes the tourism industry of the Guangdong-Hong Kong-Macao Greater Bay Area as the research object and analyzes the unique advantages and challenges of its development. This analysis aims not only to facilitate the high-quality development of the tourism industry, foster regional integration, and enhance international competitiveness but also to promote cultural exchanges and mutual learning and provide a scientific basis for policy formulation.

A Probabilistic Approach to Correct for Oblique Biases in Sea Ice Parametrization from Shipborne Cameras

Abstract This work investigates the perception bias caused by ice floes occluding open water regions behind them when analyzing sea ice from shipborne cameras. We propose a method to model this effect by predicting an occlusion probability for a given surface region based on a stochastic representation of the sea ice fields. We further show how the proposed framework can be used to design an unbiased estimator for image-based sea ice concentration by correcting for these occlusions. The occlusion model and proposed sea ice concentration estimator have been verified through simulated experiments. Results from the experiments showed that predictions from the occlusion model align with the simulated observations and that the proposed estimator remains unbiased for all environments tested. The contributions of this study can be used in algorithms for automated identification and characterization of ice environments from surface ships and are thus an essential step towards improved autonomy in Arctic navigation.

Functional genomics implicates natural killer cells in the pathogenesis of ankylosing spondylitis

Multiple lines of evidence indicate that ankylosing spondylitis (AS) is a lymphocyte-driven disease. However, which lymphocyte populations are critical in AS pathogenesis is not known. In this study, we aimed to identify the key cell types mediating the genetic risk in AS using an unbiased functional genomics approach. We integrated genome-wide association study (GWAS) data with epigenomic and transcriptomic datasets of human immune cells. To quantify enrichment of cell type-specific open chromatin or gene expression in AS risk loci, we used three published methods - LDSC-SEG, SNPsea, scDRS - that have successfully identified relevant cell types in other diseases. Natural killer (NK) cell-specific open chromatin regions are significantly enriched in heritability for AS, compared to other immune cell types such as T cells, B cells, and monocytes. This finding was consistent between two AS GWAS. Using RNA-seq data, we validated that genes in AS risk loci are enriched in NK cell-specific gene expression. Using the human Space-Time Gut Cell Atlas, we also found significant upregulation of AS-associated genes predominantly in NK cells. We performed co-localization analyses between GWAS risk loci and genetic variants associated with gene expression (eQTL) to find putative target genes. This revealed four AS risk loci affecting regulation of candidate target genes in NK cells: two known loci, ERAP1 and TNFRSF1A, and two under-studied loci, ENTR1 (aka SDCCAG3) and B3GNT2. Our findings suggest that NK cells may play a crucial role in AS development and highlight four putative target genes for functional follow-up in NK cells.

La Alianza del Pacífico: más cooperación que integración

The Pacific Alliance was established as a strategy of open regionalism in the region that seeks closer ties with Asia-Pacific and greater interdependence among its members. However, 13 years after the signing of the agreement, the results are more cooperation than integration. The changing Latin American political landscape shows a weakening of this multilateral organization, giving way to regionalism and a soft and pendular leadership. This article mentions its stages, achievements and future possibilities. Its evolution and trajectory have not been homogeneous, but rather present ups and downs and the possibility of new issues. The methodology is qualitative, combining primary and secondary sources, and counterbalances media with academic analysis.

Structural and dynamical properties of two dimensional disordered metal chalcogenides AB (A [formula omitted] Zn, Cd; B [formula omitted] S, Se): A classical molecular dynamic study

In recent years, the synthesis of two-dimensional (2D) materials, particularly the crystalline and disordered phases of 2D transition metal chalcogenides (TMCs), has gained considerable attention due to their wider electronic band gaps. This distinctive feature is pivotal in shaping their potential applications in solar cells, sensors, field-effect transistors (FETs), and photocatalysis for water decomposition. In the present study, we report molecular dynamics simulation of 2d disordered configuration of ZnX and CdX (X: S, Se) compounds using the Stillinger–Weber potential. We have explored their structural features by calculating their radial distribution functions and ring statistics. These systems are thermodynamically stable. The disordered network with numerous voids in these compounds play a pivotal role in lowering their melting temperature compared to their 2D crystalline counterparts, which falls within the range of 600 K to 700 K. The phonon density of states for all these systems shows a higher number of lower frequency (acoustic) modes than optical modes, which is understandably due to the presence of open regions and 2-fold sites in such systems.

ROLE OF ASEAN IN ECONOMIC INTEGRATION PROCESSES IN ASIA

ASEAN plays significant role in the economic integration processes in Asia. The financial crisis in 1997 fostered the integration processes between Asian countries. Asian integration mainly characterized by the open regionalism which promotes economic integration and trade liberalization between states. Asian regionalism is market-driven and open to economic cooperation, trade and investment. ASEAN promote the internal integration between member states of the organization and external integration between ASEAN and partners. ASEAN’s initiativesthat focused on external integration such as ASEAN Regional Forum, APEC, East Asia Summit, ASEAN+3 and others. Through its collaborative efforts and commitment to fostering economic partnerships, the Asian region has witnessed substantial progress in trade, investme nt and economic cooperation. The article analyzes the intra-regional trade, investment flows , economic cooperation initiatives between ASEAN and East Asian countries. This article examine s economic relations of ASEAN with China, Japan and South Korea in the framework of ASEAN+3. The ASEAN+3 forum fosters economic cooperation between Southeast Asia and East Asian countries such as China, Japan, South Korea. The cooperation between ASEAN and China, Japan, South Korea mainly focused on the economic cooperation, mainly trade, FDI Investment and digital economy.ASEAN+3 considered asan important platform for promoting regiona l cooperation between the countries of Southeast Asia and East Asia.

The chromatin landscape of high-grade serous ovarian cancer metastasis identifies regulatory drivers in post-chemotherapy residual tumour cells

Disease recurrence following chemotherapy is a major clinical challenge in ovarian cancer (OC), but little is known regarding how the tumour epigenome regulates transcriptional programs underpinning chemoresistance. We determine the single cell chromatin accessibility landscape of omental OC metastasis from treatment-naïve and neoadjuvant chemotherapy-treated patients and define the chromatin accessibility profiles of epithelial, fibroblast, myeloid and lymphoid cells. Epithelial tumour cells display open chromatin regions enriched with motifs for the oncogenic transcription factors MEIS and PBX. Post chemotherapy microenvironments show profound tumour heterogeneity and selection for cells with accessible chromatin enriched for TP53, TP63, TWIST1 and resistance-pathway-activating transcription factor binding motifs. An OC chemoresistant tumour subpopulation known to be present prior to treatment, and characterised by stress-associated gene expression, is enriched post chemotherapy. Nuclear receptors RORa, NR2F6 and HNF4G are uncovered as candidate transcriptional drivers of these cells whilst closure of binding sites for E2F2 and E2F4 indicate post-treated tumour having low proliferative capacity. Delineation of the gene regulatory landscape of ovarian cancer cells surviving chemotherapy treatment therefore reveals potential core transcriptional regulators of chemoresistance, suggesting novel therapeutic targets for improving clinical outcome.

Analysis of chromatin accessibility in peripheral blood mononuclear cells from patients with early-stage breast cancer.

Objective: This study was aimed at exploring a specific open region of chromatin in the peripheral blood mononuclear cells (PBMCs) of patients with breast cancer and evaluating its feasibility as a biomarker for diagnosing and predicting breast cancer prognosis. Methods: We obtained PBMCs from breast cancer patients and healthy people for the assay for transposase-accessible chromatin (ATAC) sequencing (n = 3) and obtained the GSE27562 chip sequencing data for secondary analyses. Through bioinformatics analysis, we mined the pattern changes for chromatin accessibility in the PBMCs of breast cancer patients. Results: A total of 1,906 differentially accessible regions (DARs) and 1,632 differentially expressed genes (DEGs) were identified via ATAC sequencing. The upregulated DEGs in the disease group were mainly distributed in the cells, organelles, and cell-intima-related structures and were mainly responsible for biological functions such as cell nitrogen complex metabolism, macromolecular metabolism, and cell communication, in addition to functions such as nucleic acid binding, enzyme binding, hydrolase reaction, and transferase activity. Combined with microarray data analysis, the following set of nine DEGs showed intersection between the ATAC and microarray data: JUN, MSL2, CDC42, TRIB1, SERTAD3, RAB14, RHOB, RAB40B, and PRKDC. HOMER predicted and identified five transcription factors that could potentially bind to these peak sites, namely NFY, Sp 2, GFY, NRF, and ELK 1. Conclusion: Chromatin accessibility analysis of the PBMCs from patients with early-stage breast cancer underscores its potential as a significant avenue for biomarker discovery in breast cancer diagnostics and treatment. By screening the transcription factors and DEGs related to breast cancer, this study provides a comprehensive theoretical foundation that is expected to guide future clinical applications and therapeutic developments.

Abstract B011: FOXA1 as a pioneer factor in ERα-DNA interactions and its therapeutic potential in ER+ breast cancer: Insights from ChIP-seq and GWAS in Hispanic populations

Abstract Forkhead box A1 (FOXA1) acts as a pioneer factor for Estrogen Receptor alpha (ERα), playing a crucial role in determining where ERα binds to DNA and regulates gene expression in breast cancer cells. A pioneer factor is a class of transcription factors (TF) that is responsible for opening the chromatin to allow other TFs to attach and activate transcription of that gene. FOXA1 acts as a facilitator for ERα-DNA interactions. It binds to specific DNA regions, opening the chromatin for ERα to bind. It “pre-marks” these sites in the genome even in the absence of estrogen. In fact, FOXA1 is frequently overexpressed in ER+ breast cancers, suggesting it has a crucial role in driving tumor growth. As such, FOXA1 is an attractive therapeutic target that already serves as a great biomarker for many types of breast cancers. Inhibiting FOXA1 can potentially block ER activity and inhibit growth of ER+ breast cancer, especially in those resistant to anti-estrogen therapies, such as tamoxifen. In this project, we identified sites that FOXA1 opens and correlated them with SNP mutations commonly found in the Hispanic population. The presence of these SNPs portends a worse outcome in Hispanic patients. To assess which open chromatin regions are crucial for breast cancer pathogenesis, a ChIP-seq analysis was done on vehicle-treated and estrogen-treated samples to determine FOXA1 binding sites. After identifying gained, lost, and differentially expressed peaks set, these were compared to genome-wide association studies (GWAS) of Hispanic patients to develop an understanding of how much overlap is common between sites of mutations and open sections of chromatin due to FOXA1. Through our analysis, we uncovered a subset of FOXA1 binding sites that overlap with sites of inherited mutation in Hispanic patients. This informs on the subset of genes that are linked to breast cancer and potential therapeutic targets. Citation Format: Hemakshat Sharma, Alyssa Maria Arreola, Frances L. Heredia, Hector L. Franco, Julie Dutil. FOXA1 as a pioneer factor in ERα-DNA interactions and its therapeutic potential in ER+ breast cancer: Insights from ChIP-seq and GWAS in Hispanic populations [abstract]. In: Proceedings of the 17th AACR Conference on the Science of Cancer Health Disparities in Racial/Ethnic Minorities and the Medically Underserved; 2024 Sep 21-24; Los Angeles, CA. Philadelphia (PA): AACR; Cancer Epidemiol Biomarkers Prev 2024;33(9 Suppl):Abstract nr B011.

Epigenomic, transcriptomic and proteomic characterizations of reference samples.

A variety of newly developed next-generation sequencing technologies are making their way rapidly into the research and clinical applications, for which accuracy and cross-lab reproducibility are critical, and reference standards are much needed. Our previous multicenter studies under the SEQC-2 umbrella using a breast cancer cell line with paired B-cell line have produced a large amount of different genomic data including whole genome sequencing (Illumina, PacBio, Nanopore), HiC, and scRNA-seq with detailed analyses on somatic mutations, single-nucleotide variations (SNVs), and structural variations (SVs). However, there is still a lack of well-characterized reference materials which include epigenomic and proteomic data. Here we further performed ATAC-seq, Methyl-seq, RNA-seq, and proteomic analyses and provided a comprehensive catalog of the epigenomic landscape, which overlapped with the transcriptomes and proteomes for the two cell lines. We identified >7,700 peptide isoforms, where the majority (95%) of the genes had a single peptide isoform. Protein expression of the transcripts overlapping CGIs were much higher than the protein expression of the non-CGI transcripts in both cell lines. We further demonstrated the evidence that certain SNVs were incorporated into mutated peptides. We observed that open chromatin regions had low methylation which were largely regulated by CG density, where CG-rich regions had more accessible chromatin, low methylation, and higher gene and protein expression. The CG-poor regions had higher repressive epigenetic regulations (higher DNA methylation) and less open chromatin, resulting in a cell line specific methylation and gene expression patterns. Our studies provide well-defined reference materials consisting of two cell lines with genomic, epigenomic, transcriptomic, scRNA-seq and proteomic characterizations which can serve as standards for validating and benchmarking not only on various omics assays, but also on bioinformatics methods. It will be a valuable resource for both research and clinical communities.

Abstract C078: Chromatin accessibility profiling of human pancreatic tumors reveals epigenetic features of malignant and stromal cell subtypes

Abstract Pancreatic ductal adenocarcinoma (PDAC) disease progression involves complex cell state transitions in both malignant and non-malignant populations within the tumor microenvironment. To uncover PDAC cell states and epigenetic features associated with clinical outcome, we profiled 40 tumor samples (33 primary tumors and 7 metastases) from 39 patients with single cell ATAC-seq, along with 10 sample-matched single cell RNA-seq profiles. Through topic modeling of high dimensional chromatin data, we uncovered distinct cis-regulatory networks underlying the classical and basal-like molecular subtypes of PDAC, which showed differential activity in basal-classical hybrid cells. Furthermore, delineation of epigenetic alterations by basal, classical, and hybrid subtypes revealed a core set of chromatin regions opened in all PDAC subtypes relative to ductal and acinar cells. These universally open regions showed striking overlap with gastrointestinal enhancers, highlighting a common endoderm lineage infidelity process across pancreatic tumors. Within the stromal compartment, we identified novel regulators of myofibroblastic cancer-associated fibroblasts (myCAFs) and inflammatory CAFs (iCAFs) from enhancer networks active in each CAF subtype. Importantly, our data uncover a highly prognostic gene program active in only one of two distinct myCAF chromatin states found in our data, highlighting a putative tumor-promoting myCAF subpopulation. Our work provides a high-resolution description of epigenetic cell state heterogeneity in PDAC, revealing novel regulators and gene programs associated with PDAC subtypes and clinical outcome. Citation Format: Kevin MacPherson-Hawthorne, Jason M. Link, Patrick Worth, Brett Sheppard, Andrew Fields, Colin Daniel, Andrew Nishida, Carl Pelz, Trent Waugh, Ethan Agritelle, John Muschler, Andrew Adey, Rosalie Sears. Chromatin accessibility profiling of human pancreatic tumors reveals epigenetic features of malignant and stromal cell subtypes [abstract]. In: Proceedings of the AACR Special Conference in Cancer Research: Advances in Pancreatic Cancer Research; 2024 Sep 15-18; Boston, MA. Philadelphia (PA): AACR; Cancer Res 2024;84(17 Suppl_2):Abstract nr C078.

Symbolic dynamics for pointwise hyperbolic systems on open regions

Abstract Under certain conditions, we construct a countable Markov partition for pointwise hyperbolic diffeomorphism $f:M\rightarrow M$ on an open invariant subset $O\subset M$ , which allows the Lyapunov exponents to be zero. From this partition, we define a symbolic extension that is finite-to-one and onto a subset of O that carries the same finite f-invariant measures as O. Our method relies upon shadowing theory of a recurrent-pointwise-pseudo-orbit that we introduce. As a canonical application, we estimate the number of closed orbits for f.

Abstract 08: Genome-wide Maps of Human Kidney Proximal Tubules and Thick Ascending Limbs of Henle reveal an Enrichment for Human Blood Pressure associated Polymorphisms

GWAS has identified >1,000 blood pressure (BP)-associated sentinel SNPs, most of which (>90%) are intronic and intergenic. How they regulate BP-relevant genes remains an open question. We hypothesized many SNPs would reside within cis -regulatory elements specific to nephron segments critical to sodium resorption such as proximal tubule (PT) and thick ascending limb (TAL). To address this, we developed chromatin state (ATAC-seq) and transcriptome (RNA-seq) maps from manually dissected human PT and medullary TAL (mTAL) segments. We identified 216,168 and 179,467 open regions in PT and mTAL, respectively, with the majority (70%) being unique to one tissue. Interestingly, peaks shared between the two segments resided more frequently in promoters, whereas unique peaks were more often found in distal introns or intergenic regions, suggesting they lie within enhancers ( Figure 1A ). Both chromatin state and transcriptomic data demonstrated a correlation between open chromatin peaks within gene promoters and mRNA levels (r=0.11; p<4.6e-16). This correlation was weaker at open regions distal to the promoter, illustrating the difficulty of mapping distal open regions to the gene(s) they regulate. We hypothesized these open regions would be enriched for BP-relevant SNPs. We curated 1,071 bp-associated SNPs and found 87 and 67 in mTAL and PT, open regions respectively, many of which are near BP-relevant genes. This enrichment was significant based on 10 4 randomizations (pValue 10 -4 ) ( Figure 1B ). We conclude that these novel tissue-specific chromatin maps can be used to identify potential mechanisms by which SNPs influence gene expression and BP. Additional studies will be needed to demonstrate both causality and molecular mechanisms.

Abstract P215: The reninness score: integrative analysis of multi-omic data to define renin cell identity.

Renin cell (RC) descendants regain the endocrine renin phenotype to overcome homeostatic threats, a process known as recruitment. The determinants that control the identity, fate, and recruitment of RCs are not well understood. We aim to 1) define the chromatin pattern that determines RC identity; and 2) develop a computational tool to score samples by similarity to that pattern. We compared open chromatin regions (ATAC-seq) between non-renin-expressing (n = 184) and renin-expressing samples (n = 19) from three different sources and stimulation states: 1) primary RCs in basal state (WT); 2) primary RCs chronically stimulated to produce renin (Recruited); and 3) constitutively renin-expressing tumoral cells. Differential analyses between the three types of RCs and the non-RCs revealed 1,525 unique open chromatin regions shared in at least two RC groups, including regions associated with RC-specific genes: Ren1 and Akr1b7. Increased accessibility regions in RC groups are cell type specific and enriched in renin-related GO terms ( e.g., cAMP and Notch signaling pathway). The bZip family ( e.g. , Atf3, p < 10 -2147 ) was the most enriched motifs in tumoral cells, and MEF2 family ( e.g. , MEF2a, p < 10 -91 ) in primary cells. We did not find a unique set of TFs specific to the Recruited group, indicating that renin recruitment may not be regulated by a recruitment-specific factor family, but could instead be driven by post-translational modification, differential co-factors, or epigenetic modifications. Next, we used a machine-learning approach to calculate a "reninness" score by training a genomic region model with renin and non-renin bulkATAC-seq data. We identified a cluster of regions (n = 112,992) around the trained renin label, which included 89% (21,820 of 24,612) of the regions with increased accessibility from the differential analyses. We calculated the reninness score based on the distance between the trained label and the predicted bulkATA sample embeddings using the trained model. Homogeneous WT RCs had the highest score, followed by renin-expressing tumoral and primary cells. Non-RCs had the lowest scores. We also adapted bulkATAC region-embedding models to pseudo-bulk ATAC- and scATAC-seq data. The observed reninness scores show that the model can also capture differences in renin recruitment potential. In conclusion, we identified the chromatin configurations defining the identity and recruitment of RCs and developed a computational score to quantify it.

Design of metal foam baffle to enhance the thermal-hydraulic performance of shell and tube heat exchanger

Solid baffles are widely used in shell and tube heat exchanger (STHX), while the highly increased flow resistance and dead zones remain serious drawbacks in the applications. To address this issue, metal foam baffle is proposed in this study to replace solid baffle. The numerical model with considering the thermal non-equilibrium between fluid and foam baffles was established. Laminar flow is assumed in the foam baffles region and the realizable k-ε turbulence model is assumed in the open region. Effects of porosity, pore density, thickness and number of foam baffle (N) on the performance were examined. Results show the foam baffles always lead to lower pressure drop of STHX compared to the solid baffles. Compared to five 2 mm thick solid baffles, five 6 mm thick metal baffles with the porosity of 0.80, 0.85 and 0.90 results higher outlet temperature at the pore density greater than 80, 120 and 160 PPI, respectively. The metal foam baffle leads to higher outlet water temperature compared with solid baffles at the baffle number N ≤ 7. The foam baffles with optimum pore parameters reduced the pressure drop by 12.9 % and increase the outlet and inlet temperature difference by 31.0 % compared to the solid baffles.

Patent infringement litigation, executive team risk appetite and corporate innovation

ABSTRACT Comprehensively deepening the trial mechanism of patent infringement litigation is important for optimizing law environment for scientific and technological innovation. However, the growing frequency for patent infringement lawsuits significantly impacts the corporate innovation. The existing literature focuses on the direct relationship between patent infringement litigation and corporate innovation without exploring the mechanisms. Based on this, this paper analyzed the effect between patent infringement litigation and innovation and heterogeneity using a fixed effects model on the theoretical model basis. The study found that patent infringement litigation has a positive impact on innovation investment; patent infringement litigation promotes innovative activity through foreign direct investment; executive team risk appetite negatively moderates the relationship between patent infringement litigation and firms’ innovation investment. Patent infringement litigation has a more significant incentive effect on the innovation activities of state-owned enterprises, more open regions, and in the northeast and east regions. This paper not only reveals the mechanism that judicial litigation affects innovation activities but also provides a reference basis to solve patent disputes.

N-myc and STAT interactor degrades interferon regulatory factor 7 mediated type I interferon signaling to promote duck Tembusu virus replication

N-myc and STAT interactor (NMI) is an interferon-induced protein, which plays a variety of biological functions by participating in signal transduction and transcriptional activation, it has been reported to regulate antiviral response of different viruses in many species. However, the role of NMI in ducks during Duck Tembusu Virus (DTMUV) infection is completely unknown. In order to reveal whether duck NMI (duNMI) is involved in the antiviral response in the process of DTMUV infection and its role, we cloned and identified duNMI gene, and conducted sequence analysis of duNMI, the open reading frame region of duNMI gene is 1,137 bp, encoding 378 amino acid residues (aa), including 3 domains, Coiled-coil domain (22-126aa), NMI/IFP 35 domain 1 (NID1) domain (174-261aa) and NMI/IFP 35 domain 2 (NID2) domain (272-360aa). Analysis of tissue distribution of duNMI in 7-day-old ducks shows that the expression of duNMI is the highest in harderian gland, followed by small intestine and pancreas. Subsequently, we found that mRNA level of duNMI increases significantly after DTMUV stimulation, and overexpression of duNMI inhibits DTMUV replication in a dose-dependent manner. Besides, duNMI inhibits the transcriptional activity of IFN-I related cytokines. Specifically, we confirmed that duNMI interacts with duck regulatory factor 7 (duIRF7) through NID1 and NID2 domains and inhibit its expression and activated-IFN-β. These results support that duNMI is an inhibitor of antiviral innate immune response in the process of DTMUV infection, which will provide a theoretical basis for the prevention of DTMUV infection.

On the Physical Consistency of an Open Quantum Region with a Classical Reservoir in Molecular Simulation

AbstractThe possibility of treating a molecular liquid in an open region at ab initio electronic resolution embedded in a classical reservoir of energy and particles, is investigated. Because of its challenging properties and its relevance in many field of current research, the system chosen as prototype of molecular liquid is water at room conditions. A numerical protocol based on the mathematical model of open particle system is applied and the results are compared with results of a full ab initio simulation of reference. The key conclusion is that one can claim the existence of a mandatory minimal size of the quantum region in which structural and electronic properties reproduce those of reference and, at the same time, the exchange of molecules with the environment takes place as expected. This work provides a proof of concept about the possibility to systematically define a physically well founded open quantum system embedded in a classical environment. In turn, the proof of concept is a key information for the design of numerically efficient algorithms for ab initio molecular dynamics simulations of open systems.