We study periods in an integral basis near all possible singularities in one-dimensional complex structure moduli spaces of Calabi-Yau threefolds. Near large complex structure points these asymptotic periods are well understood in terms of the topological data of the mirror Calabi-Yau manifold. The aim of this work is to characterize the period data near other boundaries in moduli space such as conifold and K-points. Using results from Hodge theory, we provide the general form of these periods in a quantized three-cycle basis. Based on these periods we compute the prepotential and related physical couplings of the underlying supergravity theory. Moreover, we elucidate the meaning of the model-dependent coefficients that appear in these expressions: these can be identified with certain topological and arithmetic numbers associated to the singular geometry at the moduli space boundary. We illustrate our findings by studying a wide set of examples.