Quantification of the gas streams from chemical systems such as catalytic reactors are routinely performed by on-line gas chromatography. Gas chromatographs used for this purpose are typically provided with a combination of thermal conductivity (TCD) and flame ionization (FID) detectors to be able to detect and quantify both permanent gases; COx, N2, H2, etc., and hydrocarbons. However, the accuracy of the quantification is hindered by the intrinsic limitations of each type of detector. Namely, TCD has low sensitivity and FID does not detect permanent gases. Therefore, modern gas chromatographs include methanizer units to partially overcome this shortcoming by converting COx to methane. However, as far as these authors know, the literature has not presented an analytical method to characterize gas streams with high accuracy by the simultaneous use of a combination of a TCD-FID detection system provided with a methanizer. This work is an attempt to solve this problematic; it consists of the formulation of a mathematical model for the well-known external and internal standard quantification methods in gas chromatography. The analysis of the gas stream from a catalytic reactor performing the combustion of methane was used to validate the developed method. The concentration ranges of the analysed gases were: 0.8-7.7vol% of CH4, CO2, and CO, 7.7-38.5vol.% of O2, and 46.2-90.8vol.% of N2 at a total flow of 130mLmin-1. It was found that the commonly applied external standard method leads not only to inaccurate quantification but also to physically meaningless carbon balances and conclusions on the behaviour of the selected model system. In contrast, the internal standard method led to a highly accurate quantification with a physically meaningful carbon balance. Considering these findings, this contribution also draws attention to the need for a thoughtful application of chromatographic methods when studying the reactivity of gas systems.