Oligotrophic Waters Research Articles

Rhizobia–diatom symbiosis fixes missing nitrogen in the ocean

Rhizobia–diatom symbiosis fixes missing nitrogen in the ocean

Nitrogen uptake rates and phytoplankton composition across contrasting North Atlantic Ocean coastal regimes north and south of Cape Hatteras

Understanding nitrogen (N) uptake rates respect to nutrient availability and the biogeography of phytoplankton communities is crucial for untangling the complexities of marine ecosystems and the physical, biological, and chemical forces shaping them. In the summer of 2016, we conducted measurements of bulk microbial uptake rates for six 15N-labeled substrates: nitrate, nitrite, ammonium, urea, cyanate, and dissolve free amino acids across distinct marine provinces, including the continental shelf of the Mid-and South Atlantic Bights (MAB and SAB), the Slope Sea, and the Gulf Stream, marking the first instance of simultaneously measuring six different N uptake rates in this dynamic region. Total measured N uptake rates were lowest in the Gulf Stream followed by the SAB. Notably, the MAB exhibited significantly higher N uptake rates compared to the SAB, likely due to the excess levels of pre-existing phosphorus present in the MAB. Together, urea and nitrate uptake contributed approximately 50% of the total N uptake across the study region. Although cyanate uptake rates were consistently low, they accounted for up to 11% of the total measured N uptake at some Gulf Stream stations. Phytoplankton groups were identified based on specific pigment markers, revealing a dominance of diatoms in the shelf community, while Synechococcus, Prochlorococcus, and pico-eukaryotes dominated in oligotrophic Gulf Stream waters. The reported uptake rates in this study were mostly in agreement with previous studies conducted in coastal waters of the North Atlantic Ocean. This study suggests there are distinct regional patterns of N uptake in this physically dynamic region, correlating with nutrient availability and phytoplankton community composition. These findings contribute valuable insights into the intricate interplay of biological and chemical factors shaping N dynamics in disparate marine ecosystems.

Biogeochemical factors regulating photosynthetically dissolved organic carbon produced by phytoplankton in the Taiwan Strait

The distribution and mechanisms of photosynthetically dissolved organic carbon (PDOC) released by marine phytoplankton are frequently neglected and inadequately understood because most studies on carbon sequestration capacity have focused on photosynthetic particulate organic carbon. In this study, percentage extracellular release (PER) and its environmental influencing factors were investigated for 10 cruises in the Taiwan Strait during 2006–2023. The results indicated that the PER increased horizontally from the nearshore to the off-shelf and vertically from the surface to the bottom within the euphotic zone. PER tends to be low in eutrophic waters such as upwellings and estuaries and high in oligotrophic waters. The study revealed that the average contribution of PDOC to total primary productivity (TPP) in the Taiwan Strait could reach 18.2 ± 11.7%, which is similar to the previously estimated global oceanic values. PDOC production satisfied approximately 25% the carbon requirements of heterotropic bacteria (HB). A detailed analysis of the PER combined with model simulations proved that the distribution of the PER in the Taiwan Strait was caused by the joint contribution of irradiance, size-fractionated phytoplankton, and nutrient stoichiometry. Our results contradict the view that the PER is a constant factor that is unaffected by TPP. However, there was a significant negative correlation between the PER and TPP. The PDOC was always lower than the bacterial carbon demand for a broad range of bacterial growth efficiencies, suggesting a weak coupling between phytoplankton exudation and bacterial metabolism. This challenges the idea that there is a well-coupled relationship between bacteria and phytoplankton present on the continental shelf. These findings indicate significant discrepancies in PDOC mechanisms and the quantitative importance of nearshore eutrophic and off-shelf oligotrophic environments. Consequently, it is unwise to use uniform PERs without differentiation under trophic conditions when reevaluating and appraising marine carbon fixation.

Nannofossils from the Middle Eocene Sabiñánigo Sandstone Formation in the Jaca Basin (southern Pyrenees): biostratigraphy and paleoenvironmental implications

Abstract. This study presents the first detailed data on calcareous nannofossil assemblages from the Sabiñánigo Sandstone Formation in the Jaca Basin (central south Pyrenees). This formation is mainly composed of deltaic and outer-shelf sediments. These siliciclastic deposits contain nannofossil assemblages that are moderately to well-preserved, particularly in fine-grained levels. They contain a calcareous nannofossil assemblage dominated by the species Cyclicargolithus floridanus, Coccolithus pelagicus, Coccolithus formosus, Clausicoccus fenestratus, Zygrhablithus bijugatus, and several species of Sphenolithus and Chiasmolithus. The biostratigraphic results enabled the characterization of the Middle Eocene biohorizons, based on global stratigraphic scales and the improvement of the temporal correlation and lateral evolution of this basin's deposits. The sedimentary sequence of the Sabiñánigo Sandstone was deposited during the Middle Eocene, between the upper part of biozone NP16 and the base of NP17, in the Bartonian. The calcareous nannoplankton assemblage suggests warm and oligotrophic surface waters for the Bartonian interval in the Jaca Basin.

Application and environmental impact of loose nanofiltration in surface water treatment

Loose nanofiltration (LNF) membranes with a molecular weight cutoff (MWCO) of about 1000 Da have great potential for high selectivity between natural organic matter (NOM) and mineral salts. Therefore, they are interesting for treatment plants for purifying oligotrophic lake waters with an elevated NOM concentration. This study was conducted to determine the design and operational expenses as well as the environmental impact of an LNF-based drinking water treatment process that removes NOM from Finnish surface water. Two LNF membranes with similar MWCOs were selected, and the results were compared to ultrafiltration, nanofiltration, and conventional treatment. One LNF membrane demonstrated a rejection rate of NOM higher than 95 % and a low rejection rate of hardness at about 40 %, while the other LNF membrane performed similarly to an ultrafiltration membrane. The LNF-based treatment process would increase operational expenses by 53—69 % but at the same time decrease the environmental impact by >18 %. Improved removal of aromaticity and low molecular weight compounds could lower the disinfection byproduct formation potential and microbial growth in the network, thus reducing the required chlorine dosage in the network and possibly bringing further cost savings.

Nitzschiatranstagensis Morales, Novais, Wetzel, Morais & Ector (Bacillariophyceae) - the second record in the Mediterranean Region.

The Mediterranean Region holds significant ecological importance, characterised by its unique climate, biodiversity and the crucial role it plays in global ecosystems. Mediterranean streams are naturally highly-stressed environments mainly due to fluctuations in water quantity. River flow generally varies from perennial to ephemeral and temporary rivers constitute significant water resources. Streams that flow through Balearic Islands are subjected to these conditions. The majority of these streams sustain water flow for 4-5 months annually, with exceptions noted for streams associated with springs, which typically maintain water throughout most of the year.Benthic diatoms are widely recognised as reliable bioindicators of water quality, used in many aquatic ecosystems. Analysing diatom communities and their biodiversity serves as a valuable tool to ensure the ecological and sustainable utilisation of water resources as well as the accurate development of guidelines for their conservation.The field of diatom taxonomy and distribution plays a crucial role in advancing our understanding of aquatic ecosystems and their biodiversity. Species of the genus Nitzschia are extensively found throughout the Mediterranean Region, including the Balearic Islands. However, they have rarely been investigated in temporary streams. This study presents the first record of Nitzschiatranstagensis Morales, Novais, Wetzel, Morais & Ector, outside the type locality and being the second record in Europe. In this study, the authors found this taxon in one temporary stream of Majorca Island, Torrent des Castellot in November 2005 (Balearic Islands). Nitzschiatranstagensis occurred at 2.6% abundance in this stream with oligotrophic waters (0.052 mg∙l-1 of nitrate), slightly alkaline pH values (7.8) and water conductivity levels of 626.5 µS cm-1. This species was recorded in the biofilm of the stones together with other taxa such as Achnanthidiumminutissimum (Kützing) Czarnecki (39.2%), Gomphonemarosenstockianum Lange-Bertalot & Reichardt (28.9%) and Halamphoraoligotraphenta (Lange-Bertalot) Levkov (20.4%). The Nitzschiatranstagensis frustules found in the examined material have similar dimensions and a higher fibulae count (8-11 in 10 μm vs. 6-10 in 10 μm) compared to the type material of Nitzschiatranstagensis. The habitat characteristics in which this species was found are described, together with LM micrographs of this taxon.

Variability in the relationship between light scattering and chlorophyll a concentration in oligotrophic tropical regions of the Western Pacific Ocean.

It is important to determine the relationship between the concentration of chlorophyll a (Chla) and the inherent optical properties (IOPs) of ocean water to develop optical models and algorithms that characterize the biogeochemical properties and estimate biological pumping and carbon flux in this environment. However, previous studies reported relatively large variations in the particulate backscattering coefficient (bbp(λ)) and Chla from more eutrophic high-latitude waters to clear oligotrophic waters, especially in oligotrophic oceanic areas where these two variables have little covariation. In this study, we examined the variability of bbp(λ) and Chla in the euphotic layer in oligotrophic areas of the tropical Western Pacific Ocean and determined the sources of these variations by reassessment of in-situ measurements and the biogeochemical-argo (BGC-Argo) database. Our findings identified covariation of bbp(λ) and Chla in the water column below the deep Chla maximum (DCM) layer, and indicated that there was no significant correlation relationship between bbp(λ) and Chla in the upper layer of the DCM. Particles smaller than 3.2 µm that were in the water column above the DCM layer had a large effect on the bbp(λ) in the vertical profile, but particles larger than 3.2 µm and smaller than 10 µm had the largest effect on the bbp(λ) in the water column below the DCM layer. The contribution of non-algal particles (NAPs) to backscattering is up to 50%, which occurs in the water depth of 50 m and not consistent with the distribution of Chla. Phytoplankton and NAPs were modeled as coated spheres and homogeneous spherical particles to simulate the bbp(λ) of the vertical profile by Aden-Kerker method and Mie theory, and the results also indicated that the backscattering caused by particles less than 20 µm were closer to the measured data when they were below and above the DCM layer, respectively. This relationship also reflects the bbp(λ) of particles in the upper water was significantly affected particle size, but bbp(λ) in the lower water was significantly affected by Chla concentration. This effect may have relationship with phytoplankton photoacclimation and the relationship of a phytoplankton biomass maximum with particle size distribution in the water column according to the previous relevant studies. These characteristics also had spatial and seasonal variations due to changes of Chla concentration at the surface and at different depths. There was mostly a linear relationship between Chla and bbp(700) during winter. During other seasons, the relationship between these two variables was better characterized by a power function (or a logarithmic function) in the lower layer of the DCM. The spatial and vertical relationships between the bbp(λ) and Chla and the corresponding variations in the types of particles described in this study provide parameters that can be used for accurate estimation of regional geochemical processes.

Mesoscale mosaics of interannual variations in surface temperature, chlorophyll a concentration, and their relation in a coastal fishing ground

AbstractTo test the potential of high‐resolution satellite image analysis for assessing and predicting the mesoscale (<10 km in this study) effects of climate and environmental change on temperature and primary productivity in fishing grounds, we conducted satellite image analysis around an island in a coastal strait west of Japan from 2018 to 2023. We observed a distinct north–south gradient in sea surface temperature (SST) and chlorophyll a concentration (CHL) over approximately 20 km of the transect, which was likely affected by the current system. The model configuration suggests that the frequency of southward currents during winter–spring can control the magnitude of spring phytoplankton blooms. In the study region, an increase in SST at a rate of 0.06–0.13°C y−1 occurred during the study period, accompanied by a decrease in CHL. The north–south gradient in the rate of change suggests that the variation in the temperature and flow rate of the Kuroshio Current into the study area was due to these abrupt changes. The relationship between the annual mean SST and CHL was also spatially heterogeneous, showing a higher sensitivity of CHL to SST in the southwest of the island than in the north. In addition to the intrusion of warm and oligotrophic Kuroshio waters, the spread of less saline and more eutrophic coastal waters likely influenced this spatial heterogeneity. The satellite image analysis in the present study successfully revealed mesoscale mosaics of environmental conditions in coastal fishery grounds.

Loofah sponge crosslinked polyethyleneimine loaded with biochar biofilm reactor for ecological remediation of oligotrophic water: Mechanism, performance, and functional characterization

The removal of complex pollutants from oligotrophic water is an important challenge for researchers. In this study, the HCl-modified loofah sponge crosslinked polyethyleneimine loaded with biochar (LS/PEI@biochar) biofilm reactor was adapted to achieve efficient removal of complex pollutants in oligotrophic water. On the 35 d, the average removal efficiency of chemical oxygen demand (COD), ammonia nitrogen (NH4+-N), calcium (Ca2+), and phosphate (PO43--P) in water was 51, 95, 81, and 77 %, respectively. Additionally, it effectively used a low molecular weight carbon source. Scanning electron microscopy (SEM) results showed that the LS/PEI@biochar biocarrier had superior biofilm suspension performance. Meanwhile, analysis of the biocrystals confirmed Ca2+ and PO43- removal through the generation of CaCO3 (calcite and vaterite) and Ca5(PO4)3OH. This study demonstrated that the system has great efficiency and application prospect in treating oligotrophic water on the laboratory scale, and will be further validated for practical application on large-scale oligotrophic water.

Mechanism of organic phosphorus transformation and its impact on the primary production in a deep oligotrophic plateau lake during stratification

Global warming is leading to extended stratification in deep lakes, which may exacerbate phosphorus (P) limitation in the upper waters. Conversion of labile dissolved organic P (DOP) is a possible adaptive strategy to maintain primary production. To test this, the spatiotemporal distributions of various soluble P fractions and phosphomonesterase (PME)/phosphodiesterase (PDE) activities were investigated in Lake Fuxian during the stratification period and the transition capacity of organic P and its impact on primary productivity were evaluated. The results indicated that the DOP concentration (mean 0.20 ± 0.05 μmol L−1) was significantly higher than that of dissolved inorganic P (DIP) (mean 0.08 ± 0.03 μmol L−1) in the epilimnion and metalimnion, which were predominantly composed of orthophosphate monoester (monoester-P) and orthophosphate diesters (diester-P). The low ratio of diester-P / monoester-P and high activities of PME and PDE indicate DOP mineralization in the epilimnion and metalimnion. We detected a DIP threshold of approximately 0.19 μmol L−1, corresponding to the highest total PME activity in the lake. Meta-analysis further demonstrated that DIP thresholds of PME activities were prevalent in oligotrophic (0.19 μmol L−1) and mesotrophic (0.74 μmol L−1) inland waters. In contrast to the phosphate-sensitive phosphatase PME, dissolved PDE was expressed independent of phosphate availability and its activity invariably correlated with chlorophyll a, suggesting the involvement of phytoplankton in DOP utilization. This study provides important field evidence for the DOP transformation processes and the strategy for maintaining primary productivity in P-deficient scenarios, which contributes to the understanding of P cycles and the mechanisms of system adaptation to future long-term P limitations in stratified waters.

Multi-omics insights into biogeochemical responses to organic matter addition in an acidic pit lake: Implications for bioremediation

Acidic pit lakes (APLs) emerge as reservoirs of acid mine drainage in flooded open-pit mines, representing extreme ecosystems and environmental challenges worldwide. The bioremediation of these oligotrophic waters necessitates the addition of organic matter, but the biogeochemical response of APLs to exogenous organic matter remains inadequately comprehended. This study delves into the biogeochemical impacts and remediation effects of digestate-derived organic matter within an APL, employing a multi-omics approach encompassing geochemical analyses, amplicon and metagenome sequencing, and ultra-high resolution mass spectrometry. The results indicated that digestate addition first stimulated fungal proliferation, particularly Ascomycetes and Basidiomycetes, which generated organic acids through lignocellulosic hydrolysis and fermentation. These simple compounds further supported heterotrophic growth, including Acidiphilium, Acidithrix, and Clostridium, thereby facilitating nitrate, iron, and sulfate reduction linked with acidity consumption. Nutrients derived from digestate also promoted the macroscopic development of acidophilic algae. Notably, the increased sulfate reduction-related genes primarily originated from assimilatory metabolism, thus connecting sulfate decrease to organosulfur increase. Assimilatory and dissimilatory sulfate reduction collectively contributed to sulfate removal and metal fixation. These findings yield multi-omics insights into APL biogeochemical responses to organic matter addition, enhancing the understanding of carbon-centered biogeochemical cycling in extreme ecosystems and guiding organic amendment-based bioremediation in oligotrophic polluted environments.

Lipid-based paleoecological and biogeochemical reconstruction of Store Saltsø, an extreme lacustrine system in SW Greenland

Polar lakes harbour a unique biogeochemistry that reflects the implications of climatic fluctuations against a susceptible yet extreme environment. In addition to polar, Store Saltsø (Kangerlussuaq, southwestern Greenland) is an endorheic lake with alkaline and oligotrophic waters that host a distinctive ecology adapted to live in such particular physico-chemical and environmental conditions. By exploring the sedimentary record of Store Saltsø at a molecular and compound-specific isotopic level, we were able to understand its ecology and biogeochemical evolution upon climate change. We employed lipid biomarkers to identify biological sources and metabolic traits in different environmental samples (shore terrace, sediment core, and white precipitates at the shore), and their succession over time to reconstruct the lake paleobiology. Different molecular ratios and geochemical proxies provided further insights toward the evolution of environmental conditions in the frame of the deglaciation history of Kangerlussuaq. The relative abundance of terrestrial (i.e., plant derived) biomarkers (odd long-chain n-alkanes, even long-chain n-alkanols, and phytosterols) in the upper half of the shore terrace versus the relatively more present aquatic biomarkers (botryococcenes and long-chain alkenones) in its lower half revealed higher lake water levels in the past. Moreover, the virtual absence of organics in the deepest section of the sediment core (32–29 cm depth) suggested that the lake did not yet exist at the northwestern shore of Store Saltsø ∼5100 years ago. According to the relative abundance of lipid biomarkers detected in the adjacent section above (29–25 cm depth), we hypothesize that the northwestern shore of Store Saltsø formed ∼4900 years ago. By combining the molecular and compound-specific isotopic analysis of lipids in a ∼360 cm sedimentary sequence, we recreated the paleobiology and evolution of an extreme lacustrine environment suitable for the study of the limits of life and the effects of climate warming.

Enhanced nitrate removal efficiency and microbial response of immobilized mixed aerobic denitrifying bacteria through biochar coupled with inorganic electron donors in oligotrophic water

The nitrogen removal characteristics and microbial response of biochar-immobilized mixed aerobic denitrifying bacteria (BIADB) were investigated at 25 °C and 10 °C. BIADB removed 53.51 ± 1.72 % (25 °C) and 39.90 ± 4.28 % (10 °C) nitrate in synthetic oligotrophic water. Even with practical oligotrophic water, BIADB still effectively removed 47.66–53.21 % (25 °C), and 39.26–45.63 % (10 °C) nitrate. The addition of inorganic electron donors increased nitrate removal by approximately 20 % for synthetic and practical water. Bacterial and functional communities exhibited significant temperature and stage differences (P < 0.05), with temperature and total dissolved nitrogen being the main environmental factors. The dominant genera and keystone taxa exhibited significant differences at the two temperatures. Structural equation model analysis showed that dissolved organic matter had the highest direct and indirect effects on diversity and function, respectively. This study provides an innovative pathway for utilizing biochar and inorganic electron donors for nitrate removal from oligotrophic waters.

Sponges on shifting reefs: holobionts show similar molecular and physiological responses to coral versus macroalgal food

IntroductionMany coral reefs witness an ongoing coral-to-algae phase shift. Corals and algae release large quantities of (in)organic nutrients daily, of which a large part is utilized by sponges. In turn, sponges are important cyclers of precious resources to other inhabitants on reefs residing in oligotrophic waters. Here, we investigated whether sponge holobionts (i.e., host and prokaryotic symbionts) adapt their physiology to food released by coral- versus macroalgae.MethodsThereto, two sponge species, Plakortis angulospiculatus and Halisarca caerulea (high and low microbial abundance, respectively), were continuously exposed for 12 days to coral and macroalgal exudates in running seawater aquaria. Transcript expression of host and prokaryotic symbionts, changes in prokaryotic community composition, and holobiont physiological responses (i.e., respiratory demand, fluxes of carbon and nitrogen) were investigated after coral- versus macroalgae dominated treatments and compared to a seawater only control treatment.ResultsIn both sponge holobionts differential transcript expression between the coral and macroalgae treatments was very low (&amp;lt;0.01% of total transcripts). Differential expression was found in genes targeting cellular signaling pathways, e.g., cell proliferation (upregulated in coral treatment), and immune response (upregulated in macroalgal treatment). The sponge-associated prokaryotic community composition and sponge physiological responses were similar in all treatments, yet differed significantly between the two species.DiscussionAfter 12 days of exposure sponges appear to opportunistically feed on different food sources without having to adjust their metabolic pathways or associated prokaryotic communities. This suggests that sponges could be well-adapted to predicted changes in food source availability due to coral-to-algal phase shifts on many coral reefs.

Recovery of 1887 metagenome-assembled genomes from the South China Sea

The South China Sea (SCS) is a marginal sea characterized by strong land-sea biogeochemical interactions. SCS has a distinctive landscape with a multitude of seamounts in its basin. Seamounts create “seamount effects” that influence the diversity and distribution of planktonic microorganisms in the surrounding oligotrophic waters. Although the vertical distribution and community structure of marine microorganisms have been explored in certain regions of the global ocean, there is a lack of comprehensive microbial genomic surveys for uncultured microorganisms in SCS, particularly in the seamount regions. Here, we employed a metagenomic approach to study the uncultured microbial communities sampled from the Xianbei seamount region to the North Coast waters of SCS. A total of 1887 non-redundant prokaryotic metagenome-assembled genomes (MAGs) were reconstructed, of which, 153 MAGs were classified as high-quality MAGs based on the MIMAG standards. The community structure and genomic information provided by this dataset could be used to analyze microbial distribution and metabolism in the SCS.

Mercury Biogeochemistry and Biomagnification in the Mediterranean Sea: Current Knowledge and Future Prospects in the Context of Climate Change

In the 1970s, the discovery of much higher mercury (Hg) concentrations in Mediterranean fish than in related species of the same size from the Atlantic Ocean raised serious concerns about the possible health effects of neurotoxic monomethylmercury (MMHg) on end consumers. After 50 years, the cycling and fluxes of the different chemical forms of the metal between air, land, and marine environments are still not well defined. However, current knowledge indicates that the anomalous Hg accumulation in Mediterranean organisms is mainly due to the re-mineralization of organic material, which favors the activity of methylating microorganisms and increases MMHg concentrations in low-oxygen waters. The compound is efficiently bio-concentrated by very small phytoplankton cells, which develop in Mediterranean oligotrophic and phosphorous-limited waters and are then transferred to grazing zooplankton. The enhanced bioavailability of MMHg together with the slow growth of organisms and more complex and longer Mediterranean food webs could be responsible for its anomalous accumulation in tuna and other long-lived predatory species. The Mediterranean Sea is a “hotspot” of climate change and has a rich biodiversity, and the increasing temperature, salinity, acidification, and stratification of seawater will likely reduce primary production and change the composition of plankton communities. These changes will likely affect the accumulation of MMHg at lower trophic levels and the biomagnification of its concentrations along the food web; however, changes are difficult to predict. The increased evasion of gaseous elemental mercury (Hg°) from warming surface waters and lower primary productivity could decrease the Hg availability for biotic (and possibly abiotic) methylation processes, but lower oxygen concentrations in deep waters, more complex food webs, and the reduced growth of top predators could increase their MMHg content. Despite uncertainties, in Mediterranean regions historically affected by Hg inputs from anthropogenic and geogenic sources, such as those in the northwestern Mediterranean and the northern Adriatic Sea, rising seawater levels, river flooding, and storms will likely favor the mobilization of Hg and organic matter and will likely maintain high Hg bioaccumulation rates for a long time. Long-term studies will, therefore, be necessary to evaluate the impact of climate change on continental Hg inputs in the Mediterranean basin, on air–sea exchanges, on possible changes in the composition of biotic communities, and on MMHg formation and its biomagnification along food webs. In this context, to safeguard the health of heavy consumers of local seafood, it appears necessary to develop information campaigns, promote initiatives for the consumption of marine organisms at lower trophic levels, and organize large-scale surveys of Hg accumulation in the hair or urine of the most exposed population groups.

Potential impacts of coal mining activities on nitrate sources and transport in a karst river basin in southwest China.

Typical sources of nitrate pollution in the fragile ecological environment of karst areas, such as agricultural production activities and domestic sewage, have long attracted serious concern. However, coal development can play an equally significant role in releasing the nitrogen fixed in coal into surface watersheds in the form of nitrate, nitrite, or ammonia, consequently threatening the water quality of surface water systems in mining areas. In this study, a typical karst surface watershed system affected by coal mining activities was selected for an in-depth investigation with the aim of realistically assessing the potential contribution of coal mining to nitrogen pollution. The results reveal increasingly concerning nitrate pollution from August 2020 to November 2021 in the Huatan River watershed under the influence of anthropogenic activities, especially mining development and agricultural production. Given that the nitrogen and oxygen isotope compositions of nitrate do not support the presence of denitrification, the variation in the NO3-/Cl- ratio and the relatively stable Cl- concentration may be a reflection of nitrification. Although the leaching of atmospheric precipitation on the strata in the basin promoted the release of nitrogen associated with coal mining, the higher rate of nitrogen cycling in the oligotrophic mine water environment limited the contribution of coal mining to nitrogen pollution in the surface watershed. Specifically, the contribution of coal mining activities to nitrogen pollution in surface karst river is mainly NH4+-N, which contributes 10% or less to the nitrate input to the waters of the Huatan River. The findings thus highlight the necessity of further uncovering the geochemical cycling process of nitrogen during the transport of mine water in the coal mining environment.

Kuzeydoğu Akdeniz Nehirlerinde Ötrofikasyonun Değerlendirilmesi için Çözünmüş Besin Tuzları Sınır Değerleri

In this study, an attempt was made to determine limit values of dissolved nutrients for assessing trophic status and water quality of Northeastern Mediterranean Rivers from the previously published nutrient data sets. Study findings indicated that the oligotrophic river waters should have concentrations of total phosphorus, orthophosphate, ammonium and total nitrogen less than 0.13 mg/L, 0.07 mg/L, 0.11 mg/L and 0.90 mg/L, respectively. The proposed limit values defining oligotrophy, mesotrophy and eutrophy were different than the values reported by the Surface Water Quality Regulation and the commonly used reference values. These discrepancies were probably due to distinct physical and biochemical characteristics of the rivers. For defining threshold and reference values of dissolved nutrients, new approaches, such as modeling studies, are needed to produce more sensitive assessment tools for sustainable management of NE Mediterranean Rivers.

Functional traits and health implications of the global household drinking-water microbiome retrieved using an integrative genome-centric approach

The biological safety of drinking water plays a crucial role in public health protection. However, research on the drinking water microbiome remains in its infancy, especially little is known about the potentially pathogenic bacteria in and functional characteristics of the microbiome in household tap water that people are directly exposed to. In this study, we used a genomic-centric approach to construct a genetic catalogue of the drinking water microbiome by analysing 116 metagenomic datasets of household tap water worldwide, spanning nine countries/regions on five continents. We reconstructed 859 high-quality metagenome-assembled genomes (MAGs) spanning 27 bacterial and 2 archaeal phyla, and found that the core MAGs belonging to the phylum Proteobacteria encoded the highest metabolic functional diversity of the 33 key complete metabolic modules. In particular, we found that two core MAGs of Brevibacillus and Methylomona encoded genes for methane metabolism, which may support the growth of heterotrophic organisms observed in the oligotrophic ecosystem. Four MAGs of complete ammonia oxidation (comammox) Nitrospira were identified and functional metabolic analysis suggested these may enable mixotrophic growth and encode genes for reactive oxygen stress defence and arsenite reduction that could aid survival in the environment of oligotrophic drinking water systems. Four MAGs were annotated as potentially pathogenic bacteria (PPB) and thus represented a possible public health concern. They belonged to the genera Acinetobacter (n = 3) and Mycobacterium (n = 1), with a total relative abundance of 1.06 % in all samples. The genomes of PPB A. junii and A. ursingii were discovered to contain antibiotic resistance genes and mobile genetic elements that could contribute to antimicrobial dissemination in drinking water. Further network analysis suggested that symbiotic microbes which support the growth of pathogenic bacteria can be targets for future surveillance and removal.

Symbiont genus determines the trophic strategy of corals: Implications for intraspecific competition for energy sources in coral reefs

Coral reefs are typically found in nutrient-limited waters, which may restrict the growth and expansion of corals. Nevertheless, corals are mixotrophs that may adjust to the variation in the availability of energy sources by switching their major nutritional mode between autotrophy (i.e., synthesizing their own food by symbionts) and heterotrophy (i.e., consuming external food sources). Such trophic plasticity may, however, be subject to symbiont genus and environmental conditions. Using a widespread coral species (Pocillopora damicornis), we examine how symbiont genus (Cladocopium vs. Durusdinium) affects the physiological traits (biomass, symbiont density, C:N ratio and chlorophyll content) of corals and their trophic strategy across seasons (summer and winter) based on stable isotope markers (δ13C and δ15N). We found that corals dominated by Cladocopium (PdC) had a lower symbiont density, but higher autotrophic capacity (higher cellular chlorophyll content and higher δ13C) than those by Durusdinium (PdD). Across seasons, the trophic strategy of PdC was flexible that the autotrophic capacity was reduced by 37.1 % from summer to winter, whereas the trophic strategy of PdD remained relatively unchanged. PdC had a greater heterotrophic capacity in winter, while PdD in summer. Our findings suggest that symbiont genus can determine the trophic flexibility of corals and drive trophic niche differentiation between conspecific corals. By adaptively changing trophic strategy, intraspecific competition of corals for energy sources can be reduced, possibly allowing them to persist in oligotrophic waters and adapt to the future oceanic climate.