Oceanic Biological Carbon Pump Research Articles

Metrics that matter for assessing the ocean biological carbon pump

The biological carbon pump (BCP) comprises wide-ranging processes that set carbon supply, consumption, and storage in the oceans’ interior. It is becoming increasingly evident that small changes in the efficiency of the BCP can significantly alter ocean carbon sequestration and, thus, atmospheric CO2 and climate, as well as the functioning of midwater ecosystems. Earth system models, including those used by the United Nation’s Intergovernmental Panel on Climate Change, most often assess POC (particulate organic carbon) flux into the ocean interior at a fixed reference depth. The extrapolation of these fluxes to other depths, which defines the BCP efficiencies, is often executed using an idealized and empirically based flux-vs.-depth relationship, often referred to as the “Martin curve.” We use a new compilation of POC fluxes in the upper ocean to reveal very different patterns in BCP efficiencies depending upon whether the fluxes are assessed at a fixed reference depth or relative to the depth of the sunlit euphotic zone (Ez). We find that the fixed-depth approach underestimates BCP efficiencies when the Ez is shallow, and vice versa. This adjustment alters regional assessments of BCP efficiencies as well as global carbon budgets and the interpretation of prior BCP studies. With several international studies recently underway to study the ocean BCP, there are new and unique opportunities to improve our understanding of the mechanistic controls on BCP efficiencies. However, we will only be able to compare results between studies if we use a common set of Ez-based metrics.

Flow and diffusion around and within diatom aggregates: Effects of aggregate composition and shape

AbstractDiatom aggregates constitute a significant fraction of the particle flux from the euphotic zone into the mesopelagic ocean as part of the ocean's biological carbon pump. Modeling studies of their exchange processes with the surrounding water usually assume spherical shape and that aggregates are impermeable to flow. Using particle image velocimetry, we examined flow distributions around individual aggregates of various irregular shapes formed from two different diatom species: (1) Skeletonema marinoi, known for its cell–cell stickiness, and (2) Chaetoceros affinis, exhibiting cell‐TEP (transparent exopolymeric particles) stickiness. Chaetoceros aggregates formed porous, highly irregularly shaped aggregates as compared to the more compact and near‐spherical Skeletonema aggregates, yet flow distributions around both types of aggregates were relatively similar at a millimeter scale. At a micrometer scale, the irregular shape of diatom aggregates caused velocity gradients and vorticity close to the surface to locally vary more than for spherical model aggregates (agar‐yeast spheres). Water was deflected from the surface of all aggregate types and we found no direct evidence that flow occurred within aggregates. Digital holographic imaging and Alcian blue staining revealed a substantial presence of TEP likely clogging the interstitial pore spaces in Chaetoceros aggregates. Radial oxygen concentration distributions measured by O2 microsensors within the aggregates were similar to those modeled for aggregates and spheres impermeable to flow. Thus, transport of gases, nutrients, and solutes likely occurs by diffusion, even within large, irregularly shaped diatom aggregates during sinking.

Pathways of Organic Carbon Downward Transport by the Oceanic Biological Carbon Pump

The oceanic biological carbon pump (BCP) regulates the Earth carbon cycle by transporting part of the photosynthetically fixed CO2 into the deep ocean. Suppressing this mechanism would result in an important increase of atmospheric CO2 level. The BCP occurs mainly in the form of (1) organic carbon (OC) particles sinking out the surface ocean, of (2) neutrally buoyant OC (dissolved or particulate) entrained by downward water masses movements and/or mixing, and of (3) active transport of OC by migrating animals such as zooplankton and fishes. These various pools of OC differ in size since their sinking, production and decomposition rates vary spatially and temporally. Moreover, the OC transported to depths via these various export pathways as well as their decomposition pathways all have different ecological origins and therefore may response differently to climate changes. Currently, most ocean biogeochemical models do not resolve these various of OC pathways explicitly; rather, they imply that OC is therein created and destroyed equally. In addition, the organic composition of these various pools is largely unknown, especially at depths below 500m. Here known processes of OC export from the surface ocean to the mesopelagic zone (100-1000m) are briefly reviewed. Three OC export pathways and some of their sub-categories are considered. I refer to published studies of OC fluxes associated with the specific downward export pathways and identify gaps that need to be addressed to better understand the OC fluxes associated with the BCP.

Eukaryotic influence on the oceanic biological carbon pump in the Scotia Sea as revealed by 18S rRNA gene sequencing of suspended and sinking particles

AbstractSuspended marine particles constitute most of the particulate organic matter pool in the oceans, thereby providing substantial substrates for heterotrophs, especially in the mesopelagic. Conversely, sinking particles are major contributors to carbon fluxes defining the strength of the biological carbon pump (BCP). This study is the first to investigate the differential influence of eukaryotic communities to suspended and sinking particles, using 18S rRNA gene sequencing on particles collected with a marine snow catcher in the mixed layer and upper mesopelagic of the Scotia Sea, Southern Ocean. In the upper mesopelagic, most eukaryotic phytoplankton sequences belonged to chain‐forming diatoms in sinking particles and to prymnesiophytes in suspended particles. This suggests that diatom‐enriched particles are more efficient in carbon transfer to the upper mesopelagic than those enriched in prymnesiophytes in the Scotia Sea, the latter more easily disintegrating into suspended particles. In the upper mesopelagic, copepods appeared most influential on sinking particles whereas soft‐tissue metazoan sequences contributed more to suspended particles. Heterotrophic protists and fungi communities were distinct between mixed layer and upper mesopelagic, implying that few protists ride along sinking particles. Furthermore, differences between predatory flagellates and radiolarians between suspended and sinking particles implied different ecological conditions between the two particles pools, and roles in the BCP. Molecular analyses of sinking and suspended particles constitute powerful diagnostic tools to study the eukaryotic influence on the BCP in a more holistic manner compared to classic carbon export studies focusing on sinking particles.

Effects of Eddy‐Driven Subduction on Ocean Biological Carbon Pump

Estimates of the ocean biological carbon pump are limited by uncertainties in the magnitude of the physical injection of particulate and dissolved organic carbon to the ocean interior. A major challenge is to evaluate the contribution of these physical pumps at small spatial and temporal scales (<100 km and <1 month). Here, we use a submesoscale permitting biophysical model covering a large domain representative of a subpolar and a subtropical gyre to quantify the impact of small‐scale physical carbon pumps.The model successfully simulates intense eddy‐driven subduction hot spots with a magnitude comparable to what has been observed in nature (1,000–6,000 mg C·m−2·day−1). These eddy‐driven subduction events are able to transfer carbon below the mixed‐layer, down to 500‐ to 1,000‐m depth. However, they contribute <5% to the annual flux at the scale of the basin, due to strong compensation between upward and downward fluxes. The model also simulates hot spots of export associated with small‐scale heterogeneity of the mixed layer, which intermittently export large amounts of suspended particulate and dissolved organic carbon. The mixed‐layer pump contributes ∼20% to the annual flux. High‐resolution measurements of export flux are needed to test models such as this one and to improve our mechanistic understanding of the biological pump and how it will respond to climate change.

Air‐Sea Gas Transfer: Determining Bubble Fluxes With In Situ N2 Observations

AbstractOxygen measurements by in situ sensors on remote platforms are used to determine net biological oxygen fluxes in the surface ocean. On an annual basis these fluxes are stoichiometrically related to the export of organic carbon from the upper ocean (the ocean's biological carbon pump). In situ measurements on remote platforms make it feasible to observe the annual biological oxygen flux globally, but the accuracy of these estimates during periods of high winds depends on model‐determined fluxes by bubble processes created by breaking waves. We verify the importance of bubble processes in the gas exchange model of Liang et al. (2013, https://doi.org/10.1002gbc.20080) using surface‐ocean N2 gas measurements determined from observations of dissolved gas pressure and oxygen concentrations every 3 hr on a mooring in the northeast subarctic Pacific at Ocean Station Papa. The changes in N2 concentration during 10 separate monthlong periods in the winters between 2007 and 2016 indicate that bubble processes in the gas exchange model are over predicted by about a factor of 3 at this location. (The bubble mass transfer coefficients must be multiplied by 0.37 ± 0.14 to match the observations.) These results can be used to adjust model‐determined bubble fluxes to yield more accurate measurements of net biological oxygen production until the next generation gas‐exchange models are developed.

Direct Observations of Biological Carbon Export From Profiling Floats in the Subtropical North Atlantic

AbstractThe complex interplay of biological and physical mechanisms comprising the ocean's biological carbon pump has not been well characterized to date, due to the difficulty of observing these mechanisms in situ at adequate spatial and temporal resolution. An annual time series is presented of direct measurements of export production and particle properties collected using optical sediment trap‐equipped profiling floats cycling every 1.5–2.5 days. The observations indicate strong variability in particle export and bio‐optical properties, influenced by the spring bloom, mesoscale eddy activity, and the mixed layer pump. Temporal and vertical decoupling of fluxes at depths ranging from 150 to 1,000 m was also observed, and remineralization length scales were more variable than predicted by temperature‐ and oxygen‐based models. Net primary production was computed from float observations using a modification of the Carbon‐based Productivity Model and used to estimate export and export (e‐) ratios, which were compared to predictions of literature export models. Mechanistic models explicitly incorporating ecosystem processes and their depth dependence may perform better at reproducing regional observations collected at high temporal resolution.

Nutrient availability and the ultimate control of the biological carbon pump in the western tropical South Pacific Ocean

Abstract. Surface waters (0–200 m) of the western tropical South Pacific (WTSP) were sampled along a longitudinal 4000 km transect (OUTPACE cruise, DOI: 10.17600/15000900) during the austral summer (stratified) period (18 February to 3 April 2015) between the Melanesian Archipelago (MA) and the western part of the SP gyre (WGY). Two distinct areas were considered for the MA, the western MA (WMA), and the eastern MA (EMA). The main carbon (C), nitrogen (N), and phosphorus (P) pools and fluxes provide a basis for the characterization of the expected trend from oligotrophy to ultra-oligotrophy, and the building of first-order budgets at the daily and seasonal timescales (using climatology). Sea surface chlorophyll a well reflected the expected oligotrophic gradient with higher values obtained at WMA, lower values at WGY, and intermediate values at EMA. As expected, the euphotic zone depth, the deep chlorophyll maximum, and nitracline depth deepen from west to east. Nevertheless, phosphaclines and nitraclines did not match. The decoupling between phosphacline and nitracline depths in the MA allows for excess P to be locally provided in the upper water by winter mixing. We found a significant biological “soft tissue” carbon pump in the MA sustained almost exclusively by dinitrogen (N2) fixation and essentially controlled by phosphate availability in this iron-rich environment. The MA appears to be a net sink for atmospheric CO2, while the WGY is in quasi-steady state. We suggest that the necessary excess P, allowing the success of nitrogen fixers and subsequent carbon production and export, is mainly brought to the upper surface by local deep winter convection at an annual timescale rather than by surface circulation. While the origin of the decoupling between phosphacline and nitracline remains uncertain, the direct link between local P upper water enrichment, N2 fixation, and organic carbon production and export, offers a possible shorter timescale than previously thought between N input by N2 fixation and carbon export. The low iron availability in the SP gyre and P availability in the MA during the stratified period may appear as the ultimate control of N input by N2 fixation. Because of the huge volume of water to consider, and because the SP Ocean is the place of intense denitrification in the east (N sink) and N2 fixation in the west (N source), precise seasonal C, N, P, and iron (Fe) budgets would be of prime interest to understand the efficiency, at the present time and in the future, of the oceanic biological carbon pump.

Influence of diatom diversity on the ocean biological carbon pump

Diatoms sustain the marine food web and contribute to the export of carbon from the surface ocean to depth. They account for about 40% of marine primary productivity and particulate carbon exported to depth as part of the biological pump. Diatoms have long been known to be abundant in turbulent, nutrient-rich waters, but observations and simulations indicate that they are dominant also in meso- and submesoscale structures such as fronts and filaments, and in the deep chlorophyll maximum. Diatoms vary widely in size, morphology and elemental composition, all of which control the quality, quantity and sinking speed of biogenic matter to depth. In particular, their silica shells provide ballast to marine snow and faecal pellets, and can help transport carbon to both the mesopelagic layer and deep ocean. Herein we show that the extent to which diatoms contribute to the export of carbon varies by diatom type, with carbon transfer modulated by the Si/C ratio of diatom cells, the thickness of the shells and their life strategies; for instance, the tendency to form aggregates or resting spores. Model simulations project a decline in the contribution of diatoms to primary production everywhere outside of the Southern Ocean. We argue that we need to understand changes in diatom diversity, life cycle and plankton interactions in a warmer and more acidic ocean in much more detail to fully assess any changes in their contribution to the biological pump.

Light penetration structures the deep acoustic scattering layers in the global ocean.

The deep scattering layer (DSL) is a ubiquitous acoustic signature found across all oceans and arguably the dominant feature structuring the pelagic open ocean ecosystem. It is formed by mesopelagic fishes and pelagic invertebrates. The DSL animals are an important food source for marine megafauna and contribute to the biological carbon pump through the active flux of organic carbon transported in their daily vertical migrations. They occupy depths from 200 to 1000 m at daytime and migrate to a varying degree into surface waters at nighttime. Their daytime depth, which determines the migration amplitude, varies across the global ocean in concert with water mass properties, in particular the oxygen regime, but the causal underpinning of these correlations has been unclear. We present evidence that the broad variability in the oceanic DSL daytime depth observed during the Malaspina 2010 Circumnavigation Expedition is governed by variation in light penetration. We find that the DSL depth distribution conforms to a common optical depth layer across the global ocean and that a correlation between dissolved oxygen and light penetration provides a parsimonious explanation for the association of shallow DSL distributions with hypoxic waters. In enhancing understanding of this phenomenon, our results should improve the ability to predict and model the dynamics of one of the largest animal biomass components on earth, with key roles in the oceanic biological carbon pump and food web.

The potential role of Antarctic krill faecal pellets in efficient carbon export at the marginal ice zone of the South Orkney Islands in spring

Antarctic krill (Euphausia superba) play a central role in the food web of the Southern Ocean, forming a link between primary production and large predators. Krill produce large, faecal pellets (FP) which can form a large component of mesopelagic particulate organic carbon (POC) fluxes. However, the patchy distribution of krill swarms, highly variable pellet composition, and variable sinking and attenuation rates means that these episodic, but potentially large, carbon fluxes are difficult to sample or model. We measured particle flux and type using Marine Snow Catchers (MSC) in the marginal ice zone near the South Orkneys, Antarctica. Krill FP were the dominant component of the POC flux in the upper 200 m (typically 60–85%). FP sinking velocities measured onboard were highly variable (15–507 m d−1) but overall high, with mean equivalent velocities of 172, 267, and 161 m d−1 at our three stations. The high numbers of krill FP sinking through the mesopelagic suggest that krill FP can be transferred efficiently and/or that rates of krill FP production are high. We compared our direct MSC-derived estimates of krill FP POC flux (33–154 mg C m−2 d−1) and attenuation to estimates of krill FP production based on previous measurements of krill density and literature FP egestion rates, and estimated net krill FP attenuation rates in the upper mesopelagic. Calculated attenuation rates are sensitive to krill densities in the overlying water column but suggest that krill FP could be transferred efficiently through the upper mesopelagic, and, in agreement with our MSC attenuation estimates, could make large contributions to bathypelagic POC fluxes. Our study contrasts with some others which suggest rapid FP attenuation, highlighting the need for further work to constrain attenuation rates and assess how important the contribution of Antarctic krill FP could be to the Southern Ocean biological carbon pump.

Role of zooplankton in determining the efficiency of the biological carbon pump

Abstract. The efficiency of the ocean's biological carbon pump (BCPeff – here the product of particle export and transfer efficiencies) plays a key role in the air–sea partitioning of CO2. Despite its importance in the global carbon cycle, the biological processes that control BCPeff are poorly known. We investigate the potential role that zooplankton play in the biological carbon pump using both in situ observations and model output. Observed and modelled estimates of fast, slow, and total sinking fluxes are presented from three oceanic sites: the Atlantic sector of the Southern Ocean, the temperate North Atlantic, and the equatorial Pacific oxygen minimum zone (OMZ). We find that observed particle export efficiency is inversely related to primary production likely due to zooplankton grazing, in direct contrast to the model estimates. The model and observations show strongest agreement in remineralization coefficients and BCPeff at the OMZ site where zooplankton processing of particles in the mesopelagic zone is thought to be low. As the model has limited representation of zooplankton-mediated remineralization processes, we suggest that these results point to the importance of zooplankton in setting BCPeff, including particle grazing and fragmentation, and the effect of diel vertical migration. We suggest that improving parameterizations of zooplankton processes may increase the fidelity of biogeochemical model estimates of the biological carbon pump. Future changes in climate such as the expansion of OMZs may decrease the role of zooplankton in the biological carbon pump globally, hence increasing its efficiency.

The Cost of Reducing the North Atlantic Ocean Biological Carbon Pump

To predict the impacts of climate change it is essential to understand how anthropogenic change alters the balance between atmosphere, ocean, and terrestrial reservoirs of carbon. It has been estimated that natural atmospheric concentrations of CO2 are almost 200 ppm lower than they would be without the transport of organic material produced in the surface ocean to depth, an ecosystem service driven by mechanisms collectively referred to as the biological carbon pump. Here we quantify potential reductions in carbon sequestration fluxes in the North Atlantic Ocean through the biological carbon pump over the twenty-first century, using two independent biogeochemical models, driven by low and high IPCC AR5 carbon emission scenarios. The carbon flux at 1000 m (the depth at which it is assumed that carbon is sequestered) in the North Atlantic was estimated to decline between 27 and 43% by the end of the century, depending on the biogeochemical model and the emission scenario considered. In monetary terms, the value of this loss in carbon sequestration service in the North Atlantic was estimated to range between US$170–US$3000 billion in abatement (mitigation) costs and US$23–US$401 billion in social (adaptation) costs, over the twenty-first century. Our results challenge the frequent assumption that coastal habitats store more significant amounts of carbon and are under greater threat. We highlight the largely unrecognized economic importance of the natural, blue carbon sequestration service provided by the open ocean, which is predicted to undergo significant anthropogenic-driven change.

Impact of hydrothermalism on the ocean iron cycle

As the iron supplied from hydrothermalism is ultimately ventilated in the iron-limited Southern Ocean, it plays an important role in the ocean biological carbon pump. We deploy a set of focused sensitivity experiments with a state of the art global model of the ocean to examine the processes that regulate the lifetime of hydrothermal iron and the role of different ridge systems in governing the hydrothermal impact on the Southern Ocean biological carbon pump. Using GEOTRACES section data, we find that stabilization of hydrothermal iron is important in some, but not all regions. The impact on the Southern Ocean biological carbon pump is dominated by poorly explored southern ridge systems, highlighting the need for future exploration in this region. We find inter-basin differences in the isopycnal layer onto which hydrothermal Fe is supplied between the Atlantic and Pacific basins, which when combined with the inter-basin contrasts in oxidation kinetics suggests a muted influence of Atlantic ridges on the Southern Ocean biological carbon pump. Ultimately, we present a range of processes, operating at distinct scales, that must be better constrained to improve our understanding of how hydrothermalism affects the ocean cycling of iron and carbon.This article is part of the themed issue 'Biological and climatic impacts of ocean trace element chemistry'.

Quantifying the Cenozoic marine diatom deposition history: links to the C and Si cycles

Abstract. Marine planktonic diatoms are, today, among the world's main primary producers as well as the main organic carbon exporter to the deep sea despite the fact that they were a very minor component of the plankton at the beginning of the Cenozoic. They are also the main silica exporter to the deep sea, thus balancing global chemical weathering. This study reviews their global Cenozoic depositional pattern in order to understand the modality and the context of their rise to dominance, but also to understand how diatom evolution affected the Cenozoic functioning of the ocean's biological pump. After two short-lived major abundance peaks near the Eocene–Oligocene boundary and in the late Oligocene, diatom abundance in sediments shifted in the middle Miocene to globally higher values which have largely persisted to the modern day. These quantitative findings provide support for the hypothesis according to which diatoms, through their ecological role in the ocean's biological carbon pump, have contributed to the Cenozoic changes in atmospheric carbon dioxide pressure and consequently to changes in the global climate state. Additionally, correlations between diatom abundance peaks and shifts in seawater strontium and osmium isotopic composition hint at a strong control of the silicate weathering on diatom deposition.

Featured L&O E‐Lecture: The Ocean's Biological Carbon Pump as Part of the Global Carbon Cycle

The Biological Carbon Pump includes all those processes in the ocean that cause photosynthetically formed organic carbon (primary production) by phytoplankton in the sunlit surface layer (the euphotic zone) to be removed from contact with the atmosphere. It is a mechanism that sequesters carbon dioxide (CO2) from contact with the atmosphere for weeks to hundreds or even millions of years (geological time-scales). Together with the physical carbon pump, the biological carbon pump constitutes the ocean's CO2 sink. Combined, these two major processes in the global carbon cycle have removed about 2–2.5 Pg Carbon per year (last decade average). This e-Lecture introduces the biology and biogeochemistry of the Biological Carbon Pump by paying close attention to relevant timescales (from today's carbon cycle to processes on geological time-scales) and to the global carbon cycle. Topics include an introduction to the different carbon pumps (biological, carbonate, and physical), followed by a detailed process-oriented introduction to the biological carbon pumps. This also includes the organismal aspects, such as an introduction to phytoplankton, primary production, distribution of primary producers in the global ocean, and the role of zooplankton in particle formation, transformation, removal, and active transport. We cover specific aspects of the lecture as modules (“Excursions”) that give the reader/lecturer the chance to explore some topics in greater detail. These “Excursions” are entitled “Instrumentation: Quantifying Particle Flux,” “Particle Sinking and Degradation,” and “The Biological Carbon Pump on Geological Timescales.”

Phytoplankton dynamics in contrasting early stage North Atlantic spring blooms: composition, succession, and potential drivers

Abstract. The spring bloom is a key annual event in the phenology of pelagic ecosystems, making a major contribution to the oceanic biological carbon pump through the production and export of organic carbon. However, there is little consensus as to the main drivers of spring bloom formation, exacerbated by a lack of in situ observations of the phytoplankton community composition and its evolution during this critical period. We investigated the dynamics of the phytoplankton community structure at two contrasting sites in the Iceland and Norwegian basins during the early stage (25 March–25 April) of the 2012 North Atlantic spring bloom. The plankton composition and characteristics of the initial stages of the bloom were markedly different between the two basins. The Iceland Basin (ICB) appeared well mixed down to >400 m, yet surface chlorophyll a (0.27–2.2 mg m−3) and primary production (0.06–0.66 mmol C m−3 d−1) were elevated in the upper 100 m. Although the Norwegian Basin (NWB) had a persistently shallower mixed layer (<100 m), chlorophyll a (0.58–0.93 mg m−3) and primary production (0.08–0.15 mmol C m−3 d−1) remained lower than in the ICB, with picoplankton (<2 μm) dominating chlorophyll a biomass. The ICB phytoplankton composition appeared primarily driven by the physicochemical environment, with periodic events of increased mixing restricting further increases in biomass. In contrast, the NWB phytoplankton community was potentially limited by physicochemical and/or biological factors such as grazing. Diatoms dominated the ICB, with the genus Chaetoceros (1–166 cells mL−1) being succeeded by Pseudo-nitzschia (0.2–210 cells mL−1). However, large diatoms (>10 μm) were virtually absent (<0.5 cells mL−1) from the NWB, with only small nano-sized (<5 μm) diatoms (i.e. Minidiscus spp.) present (101–600 cells mL−1). We suggest microzooplankton grazing, potentially coupled with the lack of a seed population of bloom-forming diatoms, was restricting diatom growth in the NWB, and that large diatoms may be absent in NWB spring blooms. Despite both phytoplankton communities being in the early stages of bloom formation, different physicochemical and biological factors controlled bloom formation at the two sites. If these differences in phytoplankton composition persist, the subsequent spring blooms are likely to be significantly different in terms of biogeochemistry and trophic interactions throughout the growth season, with important implications for carbon cycling and organic matter export.

Effects of clay minerals on the aggregation and subsequent settling of marine Synechococcus

AbstractCyanobacteria are considered to play an important role in the oceanic biological carbon pump, especially in oligotrophic regions. But as single cells are too small to sink, their carbon export has to be mediated by aggregate formation and possible consumption by zooplankton producing sinking fecal pellets. Here, we study the aggregation and subsequent settling of the ubiquitous marine picocyanobacterium Synechococcus as a model organism in roller tanks and investigate the effects of the clays kaolinite and bentonite in a series of concentrations. We found that (1) Synechococcus cells formed aggregates as large as 1.4 mm in diameter that sank at velocities of up to 440 m d−1 and 660 m d−1 with and without ballasting clays, respectively; (2) clay minerals increased the number and reduced the size of aggregates, and their ballasting effects increased the excess density and sinking velocity of aggregates; (3) kaolinite, with its lower cation exchange capacity, resulted in smaller and slower sinking aggregates compared to bentonite; and (4) based on our experimental conditions, Synechococcus could potentially export carbon 2–3 times of that contained in their cells via aggregation, likely due to the scavenging of transparent exopolymer particles and dissolved organic matter. The presented results have relevance for our understanding of the role of cyanobacteria in the ecology and biogeochemistry in today's ocean and also elucidate mechanisms of carbon export in the early Proterozoic ocean.

Variable C : N : P stoichiometry of dissolved organic matter cycling in the Community Earth System Model

Abstract. Dissolved organic matter (DOM) plays an important role in the ocean's biological carbon pump by providing an advective/mixing pathway for ~ 20% of export production. DOM is known to have a stoichiometry depleted in nitrogen (N) and phosphorus (P) compared to the particulate organic matter pool, a fact that is often omitted from biogeochemical ocean general circulation models. However the variable C : N : P stoichiometry of DOM becomes important when quantifying carbon export from the upper ocean and linking the nutrient cycles of N and P with that of carbon. Here we utilize recent advances in DOM observational data coverage and offline tracer-modeling techniques to objectively constrain the variable production and remineralization rates of the DOM C : N : P pools in a simple biogeochemical-ocean model of DOM cycling. The optimized DOM cycling parameters are then incorporated within the Biogeochemical Elemental Cycling (BEC) component of the Community Earth System Model (CESM) and validated against the compilation of marine DOM observations. The optimized BEC simulation including variable DOM C : N : P cycling was found to better reproduce the observed DOM spatial gradients than simulations that used the canonical Redfield ratio. Global annual average export of dissolved organic C, N, and P below 100 m was found to be 2.28 Pg C yr−1 (143 Tmol C yr−1, 16.4 Tmol N yr−1, and 1 Tmol P yr−1, respectively, with an average export C : N : P stoichiometry of 225 : 19 : 1 for the semilabile (degradable) DOM pool. Dissolved organic carbon (DOC) export contributed ~ 25% of the combined organic C export to depths greater than 100 m.

The Ocean's Biological Carbon pump as part of the global Carbon Cycle

SummaryThe Biological Carbon Pump includes all those processes in the ocean that cause organic carbon formed photosynthetically by phytoplankton (primary production) in the sunlit surface layer (the euphotic zone) to be removed from contact with the atmosphere. It is a mechanism that sequesters carbon dioxide (CO2) for weeks to hundreds or even millions of years (geological time‐scales). Together with the physical carbon pump, the biological carbon pump constitutes the ocean's CO2 sink, and these two major processes in the global carbon cycle have removed about 2‐ 2.5 Pg Carbon per year (last decade average)(I Pg=1015g). Today, about half of the CO2 emitted from fossil fuel burning and land use changes remains in the atmosphere, and the other half is captured by land sinks and the ocean.The modern carbon cycle is often completely separated from the short- and long-term carbon cycles of the geological past, and students from biology or biogeochemistry rarely learn about these processes and the respective timescales in a joint lecture. The purpose of this interdisciplinary lecture thus is to cover processes related to the biological carbon pump and how it functions, while paying close attention to the relevant timescales in the global carbon cycle. Note that we focus mainly on the production and sinking of particulates, we do not delve into detailed mechanisms of carbon sequestration due to the removal of dissolved organic matter. Topics will include an introduction to the different carbon pumps (biological, carbonate and physical), followed by a detailed process-oriented introduction to the biological carbon pumps. This will also include the organismal aspects, such as an introduction to phytoplankton, primary production, distribution of primary producers in the global ocean, and the role of zooplankton in the biological carbon pump. More mechanistic aspects follow, such as the concepts of new and export production, the flux attenuation and the role of mineral ballasting. We cover specific aspects of the lecture as modules (Excursions) that give the reader/lecturer the chance to explore some topics in greater detail. These "Excursions" are entitled "Instrumentation: Quantifying Particle Flux", "Particle Sinking and Degradation" and "The Biological Carbon Pump on Geological Timescales".The lecture is intended for senior undergraduates/graduates students and can be used in courses such as Oceanography, Biogeochemistry, Geology, and Environmental Life Sciences.