Aim . To study the change in the physico-biochemical properties of the nasopharyngeal aspirate in newborns with congenital cytomegalovirus infection (CMVI). Materials and methods . The pH, the concentration of medium molecular weight peptides, seromucoid, total cholesterol, triglycerides, and the activity of lactate dehydrogenase in the nasopharyngeal aspirate in 59 full-term infants with intrauterine development, uncomplicated and complicated by congenital CMVI, who died at 2-5 days of life, were studied. The first group included 25 children of early neonatal age (control group), whose mothers did not have moderate and severe obstetric and somatic pathologies during pregnancy, as well as respiratory viral infections and sexually transmitted infections. The second group was represented by 18 newborns (comparison group) from mothers with exacerbation of CMVI in the second trimester of gestation, which does not lead to antenatal infection of their offspring. The third group consisted of 16 newborns (main group) with diagnosed intrauterine CMVI. Results . In the nasopharyngeal aspirate in the newborns of the second group, in comparison with the first one, there were no statistically significant differences in pH (7.02±0.016 and 7.05±0.016, respectively, p>0.05). At the same time, there was a decrease in the concentration of total cholesterol (0.196±0.006 and 0.238±0.003 mmol/L, respectively, p<0.001), an increase in the concentration of medium molecular weight peptides (0.595±0.032 and 0.345±0.005 mmol/L, respectively, p<0.001), seromucoid (0.112±0.002 and 0.098±0.001 optical density units, respectively, p<0.001), triglycerides (0.160±0.005 and 0.145±0.004 mmol/L, respectively, p<0.05) and lactate dehydrogenase activity (345,0±14.16 and 287.6±10.23 IU/L, respectively, p<0.01). In the third group, in comparison with the second one, a decrease in pH by 1.01 times (p<0.01) and in total cholesterol by 1.35 times (p<0.001), an increase in the concentration of medium molecular weight peptides by 1.32 times (p<0,05), seromucoid – 1.13 times (p<0.001), triglycerides – 1.24 times (p<0.001) and the level of lactate dehydrogenase – 1.15 times (p<0.05). Conclusion . In dead newborns with intrauterine CMVI, a change in the physico-biochemical properties of the nasopharyngeal aspirate in the first minutes after birth indicates an antenatal direct and indirect negative effect of the infection on the state of the amniotic membrane, placenta and organs of the intrauterine fetus.