Field, microstructural, and anisotropy of magnetic susceptibility (AMS) or magnetic fabric studies were applied to identify the sequence and character of the Pan-African structures in the basement of Eastern Cameroon at both sides of the regional scale Bétaré-Oya Shear Zone (BOSZ). The NE-SW trending BOSZ separates older gneisses and migmatites towards SE (domain I) from the younger rocks of the Lom meta-volcano-sedimentary basin towards NW (domain II). In domain I, early, ductile compressional deformation occurred in two events, D1 and D2, under relatively high T conditions. During subsequent cooling, strain partitioned between the competent basement gneisses with only mild compression and the bordering shear zone (BOSZ) with intense simple shear-wrenching (D3). Strain in the less competent rocks of domain II is dominated by simple shear, strike-slip wrenching (D3), with an earlier stage of compressional deformation preserved only in some low strain pods. Magnetic fabrics (AMS) document a progressive change from oblate ellipsoids towards prolate ellipsoids in domain I, when proceeding from the south towards the BOSZ. Foliations are mostly steep but define a girdle with a pole plunging gently towards WSW. The magnetic lineations also plunge mostly towards WSW at shallow angles. These fabrics indicate a compression approximately normal to the BOSZ, which is also the SE margin of the Lom Basin. In the Lom metasediments (domain II), AMS ellipsoids are typically oblate. Foliations trend NE-SW with mostly steep dips. Magnetic lineations plunge gently NE or SW. This fabric with foliations mostly steep and subparallel with the major BOSZ, combined with generally subhorizontal lineations implies the BOSZ as a Pan-African strike–slip shear zone with a subordinate component of compression. At a larger scale, the area is part of a continent-scale shear zone, separating external Pan-African domains of compression along the northern margin of the Congo craton from internal domains dominated by high-angle strike–slip and transpressional deformation. Together with published data, the present study thus demonstrates that transpression is a regional phenomenon in the Pan-African orogen of central and eastern Cameroon.