The partial-denitrification-anammox (PdNA) process exhibits great potential in enabling the simultaneous removal of NO3−-N and NH4+-N. This study delved into the impact of exogenous nano zero-valent iron (nZVI) on the PdNA process. Adding 10 mg L−1 of nZVI increased nitrogen removal efficiency up to 83.12 % and maintained higher relative abundances of certain beneficial bacteria. The maximum relative abundance of Candidatus Brocadia (1.6 %), Candidatus Kuenenia (1.5 %), Ignavibacterium (1.3 %), and Azospira (1.2 %) was observed at 10 mg L−1 of nZVI. However, the greatest relative abundance of Thauera (1.3 %) was recorded under 50 mg L−1. Moreover, applying nZVI selectively enhanced the abundance of NO3−-N reductase genes. So, keeping the nZVI concentration at 10 mg L−1 or below is advisable to ensure a stable PdNA process in mainstream conditions. Considering nitrogen removal efficiency, using nZVI in the PD-anammox process could be more cost-effective in enhancing its adoption in industrial and mainstream settings.