Nutrient-rich Environment Research Articles

The Conjugation Window in an Escherichia coli K-12 Strain with an IncFII Plasmid.

Many studies have examined the role that conjugation plays in disseminating antibiotic resistance genes in bacteria. However, relatively little research has quantitively examined and modeled the dynamics of conjugation under growing and nongrowing conditions beyond a couple of hours. We therefore examined growing and nongrowing cultures of Escherichia coli over a 24-h period to understand the dynamics of bacterial conjugation in the presence and absence of antibiotics with pUUH239.2, an IncFII plasmid containing multiantibiotic- and metal-resistant genes. Our data indicate that conjugation occurs after E. coli cells divide and before they have transitioned to a nongrowing phase. The result is that there is only a small window of opportunity for E. coli to conjugate with pUUH239.2 under both growing and nongrowing conditions. Only a very small percentage of the donor cells likely are capable of even undergoing conjugation, and not all transconjugants can become donor cells due to molecular regulatory controls and not being in the correct growth phase. Once a growing culture enters stationary phase, the number of capable donor cells decreases rapidly and conjugation slows to produce a plateau. Published models did not provide accurate descriptions of conjugation under nongrowing conditions. We present here a modified modeling approach that accurately describes observed conjugation behavior under growing and nongrowing conditions.IMPORTANCE There has been growing interest in horizontal gene transfer of antibiotic resistance plasmids as the antibiotic resistance crisis has worsened over the years. Most studies examining conjugation of bacterial plasmids focus on growing cultures of bacteria for short periods, but in the environment, most bacteria grow episodically and at much lower rates than in the laboratory. We examined conjugation of an IncFII antibiotic resistance plasmid in E. coli under growing and nongrowing conditions to understand the dynamics of conjugation under which the plasmid is transferred. We found that conjugation occurs in a narrow time frame when E. coli is transitioning from a growing to nongrowing phase and that the conjugation plateau develops because of a lack of capable donor cells in growing cultures. From an environmental aspect, our results suggest that episodic growth in nutrient-depleted environments could result in more conjugation than sustained growth in a nutrient rich environment.

Functional differentiation of nitrate-reducing isolates regulated by long-term fertilization in a rice paddy soil

Fertilization can cause obvious shifts in nitrate-reducing community composition in agricultural ecosystems; however, little is known about the behaviors and functional characters of isolated nitrate reducers adapted to a specific environment. In this study, 849 nitrate-reducing bacteria were isolated from various fertilization treatments in a long-term paddy field experiment; the isolates were further characterized in functions with both culture-dependent and independent methodologies. The results showed that CK (no fertilizer) treatment had four genera with even relative abundance, whereas the other three treatments had their own predominant genera with Chromobacterium in nitrogen (N) fertilizer, Serratia in NPK (nitrogen, phosphorus, and potassium fertilizer) and Enterobacter in NPKC treatment (NPK plus rice straw). The isolates of Serratia and Enterobacter grew faster and produced significantly more nitrites than those of Chromobacterium and Burkholderia in the normal growth medium, suggesting that the dominant isolates from nutrient-rich environment, such as NPK and NPKC treatments, are better adapted to high nutritional conditions. On the contrary, the strains of Chromobacterium and Burkholderia possessed stronger nitrite production ability in comparison with the isolates of Serratia and Enterobacter in the diluted growth medium, indicating that the selected isolates from CK and N treatments have the capability to develop under nutrient-limiting conditions. Our results indicated that the behaviors and functions of nitrate reducers appears to be important in adapting to their dwelling habitats.

Response of nutrient resorption of Leymus chinensis to nitrogen and phosphorus addition in a meadow steppe of northeast China.

Nutrient resorption, one of the most important strategies for plant nutrient conservation, is significantly affected by soil fertility. However, the effects of experimentally altered soil fertility on plant N and P resorption are poorly understood. The potential nutrient resorption response mechanisms of the dominant species Leymus chinensis to six N addition levels (0, 2.5, 5, 10, 20 and 40g·N·m-2 ·year-1 ), two P addition levels (0 and 10gP·m-2 ·year-1 ) and their interactions were studied after 3years of treatments in a temperate meadow steppe. In both green leaves and culms, N and P addition significantly increased N and P concentrations, respectively. Nitrogen addition led to a decrease in the N resorption efficiency (NRE) of both leaves and culms. Within each N treatment, P addition decreased the P resorption efficiency (PRE) of both leaves and culms and the NRE of leaves, except in the N2.5 treatment. Both NRE and PRE in leaves were higher than those in culms under N and P addition conditions. The nutrient concentrations and resorption efficiency were significantly correlated with the soil nutrient availability. Our results suggest that plants rely more on nutrient absorption from the soil, reducing the proportion of elements obtained through nutrient resorption in nutrient-rich environments.

Black Plastic Tarps Advance Organic Reduced Tillage I: Impact on Soils, Weed Seed Survival, and Crop Residue

Intensive tillage degrades soil structure, decreases soil organic matter, and can cause soil compaction and erosion over time. Organic vegetable farmers are often dependent on tillage to incorporate crop residue, control weeds, and prepare seedbeds. Black, impermeable, polyethylene tarps applied on the soil surface and removed at planting can help suppress weeds before planting and reduce farmers’ reliance on tillage. However, little is known about how black tarps affect planting conditions and how they can be used to advance reduced tillage production systems. This study investigated the effects of tarp use and tarp duration on the soil environment, surface cover crop residue, and weed suppression to assess the efficacy of using tarps to improve reduced- and no-till practices for organic vegetable production. Experiments were conducted at three sites in the northeastern United States (Freeville, NY; Riverhead, NY; and Monmouth, ME) for 2 years. Following the termination of an oat cover crop, tarps were applied over untilled soils and left in place for four time periods: untarped (control), 3 to 5 weeks (short), 6 to 8 weeks (mid), and 10 or more weeks (long) before two removal dates. Soil moisture and temperature, cover crop residue, soil inorganic nitrogen, weed seed survival, and weed percent cover were measured after tarp removal. Soil moisture and temperature were generally higher under tarps at the time of removal compared with untarped areas at 10% to 55% and 1 to 3 °C, respectively, but the effects were inconsistent. Tarps significantly increased soil nitrate concentrations by 2-times to 21-times with longer tarp durations, resulting in higher concentrations compared with untarped controls. Tarps did not affect the amount of soil covered by cover crop residue and had no consistent effects on weed seed survival of Amaranthus powellii S. Wats. or Chenopodium album L., two common annual weed species in the Northeast. Tarping for at least 3 weeks reduced the weed percent cover by 95% to 100% at the time of removal. Increasing tarp duration beyond 3 weeks did not affect any measures except soil nitrate concentrations. These results indicate that tarps can facilitate the use of reduced-till and no-till practices for organic vegetables by creating a nutrient-rich and moist soil environment free of emerged weeds before planting without soil disturbance.

Macro-detritivores Assist Resolving the Dryland Decomposition Conundrum by Engineering an Underworld Heaven for Decomposers

Litter decomposition in most terrestrial ecosystems is regulated by moisture-dependent microorganism activity, among other things. Decomposition models typically underestimate rates of plant litter decomposition in drylands, suggesting the existence of additional drivers of decomposition. Attempts to reveal these drivers have predominantly focused on abiotic degradation agents, alternative moisture sources, and soil–litter mixing. The role of burrowing animals in promoting decomposition has received less attention despite greatly contributing to plant litter transfer from the harsh desert surface to the moister and nutrient-rich environment belowground. Our goal was to explore how macro-detritivore burrows affect plant litter mineralization dynamics. We introduced 13C-labeled litter belowground into (1) desert isopod (Hemilepistus reaumuri) burrows and (2) artificial burrows, and aboveground on top of (3) isopod fecal pellet mounds and (4) bare soil crust. We compared the litter mass loss between the four treatments and used cavity ring-down spectroscopy to reveal the in situ mineralization dynamics. No litter mineralization was evident during the dry summer months both above- and belowground. Following rain events, mineralization rates spiked in all four micro-environments, quickly diminishing aboveground while slowly waning belowground. Total litter mass loss was twofold higher below than aboveground and was significantly higher in isopod burrows compared to artificial burrows. Our findings demonstrate that burrowing macro-detritivores promote litter decomposition in deserts by transferring organic matter to their burrows where favorable climatic conditions and a nutrient-enriched environment foster microbial activity. Thus, attempts to resolve the dryland decomposition conundrum should not be limited to exploring factors that allow decomposition under harsh desert surface climatic conditions, but focus on the role that animals play in facilitating decomposer-friendly environments to which they translocate plant litter.

SCFA: mechanisms and functional importance in the gut

In recent years, the importance of the gut microbiota in human health has been revealed and many publications have highlighted its role as a key component of human physiology. Owing to the use of modern sequencing approaches, the characterisation of the microbiome in healthy individuals and in disease has demonstrated a disturbance of the microbiota, or dysbiosis, associated with pathological conditions. The microbiota establishes a symbiotic crosstalk with their host: commensal microbes benefit from the nutrient-rich environment provided by the gut and the microbiota produces hundreds of proteins and metabolites that modulate key functions of the host, including nutrient processing, maintenance of energy homoeostasis and immune system development. Many bacteria-derived metabolites originate from dietary sources. Among them, an important role has been attributed to the metabolites derived from the bacterial fermentation of dietary fibres, namely SCFA linking host nutrition to intestinal homoeostasis maintenance. SCFA are important fuels for intestinal epithelial cells (IEC) and regulate IEC functions through different mechanisms to modulate their proliferation, differentiation as well as functions of subpopulations such as enteroendocrine cells, to impact gut motility and to strengthen the gut barrier functions as well as host metabolism. Recent findings show that SCFA, and in particular butyrate, also have important intestinal and immuno-modulatory functions. In this review, we discuss the mechanisms and the impact of SCFA on gut functions and host immunity and consequently on human health.

Planarian cell number depends on blitzschnell, a novel gene family that balances cell proliferation and cell death.

Control of cell number is crucial to define body size during animal development and to restrict tumoral transformation. The cell number is determined by the balance between cell proliferation and cell death. Although many genes are known to regulate those processes, the molecular mechanisms underlying the relationship between cell number and body size remain poorly understood. This relationship can be better understood by studying planarians, flatworms that continuously change their body size according to nutrient availability. We identified a novel gene family, blitzschnell (bls), that consists of de novo and taxonomically restricted genes that control cell proliferation:cell death ratio. Their silencing promotes faster regeneration and increases cell number during homeostasis. Importantly, this increase in cell number leads to an increase in body size only in a nutrient-rich environment; in starved planarians, silencing results in a decrease in cell size and cell accumulation that ultimately produces overgrowths. bls expression is downregulated after feeding and is related to activity of the insulin/Akt/mTOR network, suggesting that the bls family evolved in planarians as an additional mechanism for restricting cell number in nutrient-fluctuating environments.

The higher availability of nutrients increases the production but decreases the quality of pollen grains in Juniperus communis L.

Next to global warming, excessive deposition of nitrogen has an alarming environmental impact on forest ecology, especially within dioecious species. Resource availability affects seed quality and can affect the distribution of plant species. Lower seed productivity can also be a result of limited pollen availability or lower pollen quality. A few studies have assessed the effect of nutrient availability on the quantity and quality of pollen grains produced. Therefore, rooted shoots of dioecious, male Juniperus communis L. grown in different nutritional conditions were used to assess the impact on productivity and quality attributes of produced pollen grains (pollen volume, morphology, germination, and chemical composition). The results indicated that nutrient availability impacts pollen grain development. Male plants growing in nutrient-rich environments appear to compensate for the lower quality of produced pollen grains by producing a higher number of male cones and thus a greater quantity of pollen. In contrast, the opposite was observed in plants growing in nutrient-poor environments.The availability of nitrogen and other nutrients will probably continue to impact soils in the foreseeable future due to anthropogenic activity and can be one of the drivers that can impact the reproduction and distribution of plants.

Food sources for the Ediacara biota communities

The Ediacara biota represents the first complex macroscopic organisms in the geological record, foreshadowing the radiation of eumetazoan animals in the Cambrian explosion. However, little is known about the contingencies that lead to their emergence, including the possible roles of nutrient availability and the quality of food sources. Here we present information on primary producers in the Ediacaran based on biomarker molecules that were extracted from sediments hosting Ediacaran macrofossils. High relative abundances of algal steranes over bacterial hopanes suggest that the Ediacara biota inhabited nutrient replete environments with an abundance of algal food sources comparable to Phanerozoic ecosystems. Thus, organisms of the Ediacara biota inhabited nutrient-rich environments akin to those that later fuelled the Cambrian explosion.

Bacterial Genes Outnumber Archaeal Genes in Eukaryotic Genomes.

Eukaryotes are typically depicted as descendants of archaea, but their genomes are evolutionary chimeras with genes stemming from archaea and bacteria. Which prokaryotic heritage predominates? Here, we have clustered 19,050,992 protein sequences from 5,443 bacteria and 212 archaea with 3,420,731 protein sequences from 150 eukaryotes spanning six eukaryotic supergroups. By downsampling, we obtain estimates for the bacterial and archaeal proportions. Eukaryotic genomes possess a bacterial majority of genes. On average, the majority of bacterial genes is 56% overall, 53% in eukaryotes that never possessed plastids, and 61% in photosynthetic eukaryotic lineages, where the cyanobacterial ancestor of plastids contributed additional genes to the eukaryotic lineage. Intracellular parasites, which undergo reductive evolution in adaptation to the nutrient rich environment of the cells that they infect, relinquish bacterial genes for metabolic processes. Such adaptive gene loss is most pronounced in the human parasite Encephalitozoon intestinalis with 86% archaeal and 14% bacterial derived genes. The most bacterial eukaryote genome sampled is rice, with 67% bacterial and 33% archaeal genes. The functional dichotomy, initially described for yeast, of archaeal genes being involved in genetic information processing and bacterial genes being involved in metabolic processes is conserved across all eukaryotic supergroups.

Flow Cytometry Combined With Single Cell Sorting to Study Heterogeneous Germination of Bacillus Spores Under High Pressure.

Isostatic high pressure (HP) of 150 MPa can trigger the germination of bacterial spores, making them lose their extreme resistance to stress factors, and increasing their susceptibility to milder inactivation strategies. However, germination response of spores within a population is very heterogeneous, and tools are needed to study this heterogeneity. Here, classical methods were combined with more recent and powerful techniques such as flow cytometry (FCM) and fluorescence activated cell sorting (FACS) to investigate spore germination behavior under HP. Bacillus subtilis spores were treated with HP at 150 MPa and 37°C, stained with SYTO16 and PI, and analyzed via FCM. Four sub-populations were detected. These sub-populations were for the first time isolated on single cell level using FACS and characterized in terms of their heat resistance (80°C, 10 min) and cultivability in a nutrient-rich environment. The four isolated sub-populations were found to include (1) heat-resistant and mostly cultivable superdormant spores, i.e., spores that remained dormant after this specific HP treatment, (2) heat-sensitive and cultivable germinated spores, (3) heat-sensitive and partially-cultivable germinated spores, and (4) membrane-compromised cells with barely detectable cultivability. Of particular interest was the physiological state of the third sub-population, which was previously referred to as “unknown”. Moreover, the kinetic transitions between different physiological states were characterized. After less than 10 min of HP treatment, the majority of spores germinated and ended up in a sublethally damaged stage. HP treatment at 150 MPa and 37°C did not cause inactivation of all geminated spores, suggesting that subsequent inactivation strategies such as mild heat inactivation or other inactivation techniques are necessary to control spores in food. This study validated FCM as a powerful technique to investigate the heterogeneous behavior of spores under HP, and provided a pipeline using FACS for isolation of different sub-populations and subsequent characterization to understand their physiological states.

Environmental cues regulate epigenetic reprogramming of airway-resident memory CD8+ T cells.

Tissue-resident memory T cells (TRM cells) are critical for cellular immunity to respiratory pathogens and reside in both the airways and the interstitium. In the present study, we found that the airway environment drove transcriptional and epigenetic changes that specifically regulated the cytolytic functions of airway TRM cells and promoted apoptosis due to amino acid starvation and activation of the integrated stress response. Comparison of airway TRM cells and splenic effector-memory T cells transferred into the airways indicated that the environment was necessary to activate these pathways, but did not induce TRM cell lineage reprogramming. Importantly, activation of the integrated stress response was reversed in airway TRM cells placed in a nutrient-rich environment. Our data defined the genetic programs of distinct lung TRM cell populations and show that local environmental cues altered airway TRM cells to limit cytolytic function and promote cell death, which ultimately leads to fewer TRM cells in the lung.

Palynology, biostratigraphy, and paleoceanography of the Plio-Pleistocene at Ocean Drilling Program Site 887, Gulf of Alaska

Analyses of marine palynomorphs, including dinocysts and acritarchs, from Pliocene-Pleistocene sediments of the Ocean Drilling Program (ODP) Site 887 in the Gulf of Alaska allowed the development of a biostratigraphic scheme, which we compared with bio-events in regional diatom and radiolarian zonations. The dinocyst biostratigraphic scheme includes five biozones and four major boundaries. A first stratigraphic boundary, at 4.4 Ma, is associated with a change in productivity. The other boundaries, at 2.7 Ma, 1.7 Ma, and 0.7 Ma, correspond to the onset of the modern halocline, an intensified cooling period, and the end of the Mid-Pleistocene Transition respectively. Moreover, the analyses of dinocyst assemblages illustrate long-term changes in the surface ocean after 5.3 Ma. The occurrence of Ataxiodinium zevenboomii, Impagidinium velorum, and Impagidinium patulum suggests warm-temperate conditions until approximately 4.2 Ma. Between 4.2 and 2.7 Ma, colder and less saline events marked by an increase in cold-tolerant species, such as Habibacysta tectata, suggest regional cooling and/or lower salinity of surface water, which might be related to Alaskan glacier meltwater discharges. From 2.7 to 1.2 Ma, the presence of Impagidinium pallidum and cysts of Pentapharsodinium dalei suggests low-salinity, cold, and stratified surface waters, whereas major drops in dinocyst fluxes are linked to a decrease in productivity and harsh conditions. Progressive change from cold, stratified waters to warmer and saltier conditions occurred between 1.2 and 0.7 Ma during the Mid-Pleistocene Transition. After 0.7 Ma, dinocyst assemblages are characterized by the alternating dominance of Brigantedinium spp. and Operculodinium centrocarpum, suggesting fluctuations between nutrient-rich, low-salinity, cold waters and cool-temperate environments.

Changes of cell permeability during Listeria monocytogenes persistence under nisin treatment

The study examined free radical production of Listeria monocytogenes under nisin stress by colorimetric cell proliferation assay, and used flow cytometry (FC) to investigate the persister population of L. monocytogenes since agar plating is limited in providing information on persister cells exposed to nisin. The stationary phase populations in spent medium or resuspended in fresh TSB medium were individually treated with 75 μg/ml nisin for 24 hr at 30°C. Intracellular and extracellular free radical production was detected in the resuspended group simultaneously, while free radicals were only detected within cells in the spent medium group during the nisin treatment, and FC indicated possible population differentiation from quadrants H1-1 (“dead region,”) H1-2 (“damaged region) and H1-3(“live region”). The change in cell permeability was different under the two conditions (spent medium vs. fresh medium) when facing exposure to nisin, indicating the effect of the environment on cell persistence under nisin stress. Practical applications The practical application of this work is an awareness of how the sensitivity of a food isolate of L. monocytogenes exposed to nisin as a food preservative, and survival of tested strains can be affected by the environment in generating a population of persistent cells. A nutrient rich environment appears to enhance the population of persister cells. This is an important consideration for the food industry trying to control L. monocytogenes in a nutrient rich environment such as food. In addition, FC can be used to rapidly assess the population of persister cells compared with dead cells and provide a useful tool in risk assessment of L. monocytogenes in a food where nisin is used as a preservative.

Exploring the use of nuclear alterations, motility and ecological guilds in epipelic diatoms as biomonitoring tools for water quality improvement in urban impacted lowland streams

Abstract In this study we explored the use of less conventional diatom metrics (motility, nuclear abnormalities and ecological guilds) to measure changes in diatom assemblages related to the transfer of epipelic communities from urban impacted streams to less impacted sites. Three lowland streams in the Argentine Pampean plain were selected, and two sites were established per stream for a total of six sites. Three sites were referenced as low urban impact (LI), as they run through peri-urban areas, and three downstream sites were referenced as high impact sites (HI), since they run through a dense urban area. Six germination trays filled with stream sediment were placed at each HI site, and three at each LI site, and left to be colonized for 30 days before transferring three trays from the HI sites to their respective LI site upstream. Samples were collected at days 0, 15, 30 and 45 days from each tray, and diatom species were identified and classified into ecological guilds. Motility variables were measure per individual of the genera Nitzschia (path length, velocity and maximum velocity) through video recording. Also, the frequency of abnormal nuclear locations and nuclear membrane breakage were determined. Results showed that there were no significant differences in any motility metrics, while the nuclei variables exhibited higher proportion of abnormally positioned nuclei and nuclear membrane breakage at the HI sites. The proportion of nuclear membrane breakage decreased over time in the translocated assemblage, indicating that it could be a sensitive indicator of water quality improvement, while the ecological guilds showed significant differences on the proportion of high profile and motile diatoms. The improvement in water quality produced a significative increase in the proportion of the high profile guild in the translocated biofilm. Despite the motile forms being the dominant group, the water quality improvement allowed the high profile forms, to colonize the substrate. These results emphasize the possible use of the ecological guilds as a suitable indicator of water quality improvement in Pampean streams, especially in nutrient rich environment. These tools can provide a rapid assessment of diatom condition and could be considered supplementary to biomonitoring protocols in lowland streams.

Casamino acids slow motility and stimulate surface growth in an extreme oligotroph.

Environmental cues that regulate motility are poorly understood, but specific carbon and nitrogen sources, such as casamino acids (CAA), are known to stimulate motility in model organisms. However, natural environments are commonly more nutrient-limited than laboratory growth media, and the effect of energy-rich CAA on the motility of oligotrophic microorganisms is unknown. In this study, an extreme oligocarbotroph, Variovorax paradoxus YC1, was isolated from weathered shale rock within a disused mine level in North Yorkshire, UK. The addition of 0.1% CAA to minimal media significantly reduced the motility of YC1 after 72 h and inhibited swimming motility resulting in enhanced surface growth. We propose this response to CAA is a physiological adaptation to oligotrophy, facilitating the colonization of nutrient-rich environments.

A Continuous-Flow Model for in vitro Cultivation of Mixed Microbial Populations Associated With Cystic Fibrosis Airway Infections.

The airways of people with cystic fibrosis (CF) provide a nutrient-rich environment which favours colonisation by a variety of bacteria and fungi. Although the dominant pathogen associated with CF airway infections is Pseudomonas aeruginosa, it is becoming increasingly clear that inter-species interactions between P. aeruginosa and other colonists in the airways may have a large impact on microbial physiology and virulence. However, there are currently no suitable experimental models that permit long-term co-culture of P. aeruginosa with other CF-associated pathogens. Here, we redress this problem by describing a “3R’s-compliant” continuous-flow in vitro culture model which enables long-term co-culture of three representative CF-associated microbes: P. aeruginosa, Staphylococcus aureus and Candida albicans. Although these species rapidly out-compete one another when grown together or in pairs in batch culture, we show that in a continuously-fed setup, they can be maintained in a very stable, steady-state community. We use our system to show that even numerically (0.1%) minor species can have a major impact on intercellular signalling by P. aeruginosa. Importantly, we also show that co-culturing does not appear to influence species mutation rates, further reinforcing the notion that the system favours stability rather than divergence. The model is experimentally tractable and offers an inexpensive yet robust means of investigating inter-species interactions between CF pathogens.

Ectomycorrhizal fungus-associated determinants jointly reflect ecological processes in a temperature broad-leaved mixed forest

Ectomycorrhizal (ECM) fungi are closely related to vegetation compositions, edaphic properties, and site-specific processes. However, the coevolutionary mechanisms underlying the spatial distributions in floristic and ECM fungal composition in the context of biotic adaptations and abiotic variances remain unclear. We combine a total of 25 ECM fungus-associated environmental variables to impose three types of composite scores and then quantify the environmental gradients of geographical site, soil chemical property and vegetation functional trait across 122 grids of 20 m × 20 m in a 25-hm2 forest plot. Significant dissimilarities in vegetational and ECM fungal abundance and composition existed along the above environmental gradients. Specifically, a contrasting floristic distribution (e.g., Betula platyphylla vs. Tilia mandshurica) existed between the northeastern and southwestern areas and was closely related to the nutrient and moisture gradients (with high levels in the west and low levels in the east). Furthermore, the ECM fungal communities were more abundant in the nutrient-poor and low-moisture environments than in the nutrient-rich and high-moisture environments, and the mixed-forest in the middle-gradient sites between the northeastern and southwestern areas harbored the highest ECM fungal diversity. These findings suggest that predictable within-site vegetation succession is closely related to ECM-associated determinants and the natural spatial heterogeneity of edaphic properties at a local scale.

Nutrient-demanding species face less negative competition and plant-soil feedback effects in a nutrient-rich environment.

Plant-soil feedbacks (PSFs) and plant-plant competition influence performance and abundance of plants. To what extent the two biotic interactions are interrelated and thus affect plant performance in combination rather than in isolation remains poorly explored. It is also unclear how the abiotic context, such as resource availability, modifies individual and joint effects of PSFs and of plant-plant competition. Using a garden experiment, we assessed the strengths of PSFs, competition, and their combined effects explored under low and high nutrient levels, and related them to abundance of 46 plant species and their ecological optima with respect to soil nutrients. We found that PSFs reduced but did not eliminate differences in competitive ability of plant species. Isolated and combined effects of the biotic interactions poorly predicted local or regional abundance of species. They were rather related to species' ecological optima, as nutrient-demanding plants experienced less negative biotic effects but only in a nutrient-rich environment. Our study demonstrates that soil biota can mitigate differences in competitive ability among species. It remains to be tested whether such an equalizing effect can maintain coexistence under high nutrient availability, in which nutrient-demanding species may disproportionately benefit from less negative competition and PSF effects.

Characteristics of monolayer formation in vitro by the chytrid Batrachochytrium dendrobatidis

Batrachochytrium dendrobatidis is a globally distributed generalist pathogen that has driven many amphibian populations to extinction. The life cycle of B. dendrobatidis has two main cell types, motile zoospores, and sessile reproductive sporangia. When grown in a nutrient-rich liquid medium, B. dendrobatidis forms aggregates of sporangia that transition into monolayers on surfaces and at the air-liquid interface. Pathogenic microorganisms use biofilms as mechanisms of group interactions to survive under harsh conditions in the absence of a suitable host. We used fluorescent and electron microscopy, crystal violet, transcriptomic, and gas chromatographic analyses to understand the characteristics of B. dendrobatidis monolayers. The cell-free monolayer fraction showed the presence of extracellular ribose, mannose, xylose, galactose, and glucose. Transcriptome analysis showed that 27%, 26%, and 4% of the genes were differentially expressed between sporangia/zoospores, monolayer/zoospores, and sporangia/monolayer pairs respectively. In pond water studies, zoospores developed into sporangia and formed floating aggregates at the air-water interface and attached film on the bottom of growth flasks. We propose that B. dendrobatidis can form surface-attached monolayers in nutrient-rich environments and aggregates of sporangia in nutrient-poor aquatic systems. These monolayers and aggregates may facilitate dispersal and survival of the fungus in the absence of a host. We provide evidence for using a combination of plant-based chemicals, allicin, gingerol, and curcumin as potential anti-chytrid drugs to mitigate chytridiomycosis.