Nutrient Availability Research Articles

Phytochrome-dependent responsiveness to root-derived cytokinins enables coordinated elongation responses to combined light and nitrate cues

Plants growing at high densities can detect competitors through changes in the composition of light reflected by neighbours. In response to this far-red-enriched light, plants elicit adaptive shade avoidance responses for light capture, but these need to be balanced against other input signals, such as nutrient availability. Here, we investigated how Arabidopsis integrates shade and nitrate signalling. We unveiled that nitrate modulates shade avoidance via a previously unknown shade response pathway that involves root-derived trans-zeatin (tZ) signal and the BEE1 transcription factor as an integrator of light and cytokinin signalling. Under nitrate-sufficient conditions, tZ promotes hypocotyl elongation specifically in the presence of supplemental far-red light. This occurs via PIF transcription factors-dependent inhibition of type-A ARRs cytokinin response inhibitors. Our data thus reveal how plants co-regulate responses to shade cues with root-derived information about nutrient availability, and how they restrict responses to this information to specific light conditions in the shoot.

Land suitability evaluation for duku (Lansium domesticum Corr.) cv. Sumber in Kudus Regency, Central Java, Indonesia

Duku (Lansium domesticum) is an endemic plant in Indonesia with various benefits and distinctive tastes that many people favor. Duku originating from Kudus is known as Duku Sumber, one of the five superior duku varieties. The problem encountered today is the decreasing number of Duku Sumber plants due to land use change, and there has been no effort to increase the plant population. Information on land suitability as a basis for developing crops does not yet exist, so data about land suitability will be used as information on the wider distribution of planting areas in Kudus. This study aimed to evaluate the suitability and land use of Duku Sumber plants in the Kudus Regency. Geographic information systems and matching methods were applied to map the distribution of land suitability for Duku Sumber. The results showed that the potential and actual land suitability class for Duku Sumber are very suitable (S1) and quite suitable (S2) for the Jekulo, Hadipolo, Tenggeles, Golantepus, and Megawon areas, while the slightly suitable (S3) are Klaling, Ngembalrejo, Mejobo and Jati Wetan. The availability of nutrients (na) for nitrogen and potassium is the dominant limiting factor in this area. Nitrogen content in Jati Wetan (0.12%), Klaling (0.19%), and Hadiwarno (0.19%), while potassium content in Ngembalrejo (16.47 ppm) and Mejobo (18.57 ppm). Limitations in this area can be overcome by adding nitrogen and potassium fertilizers to become suitable land.

Eukaryotic cell size regulation and its implications for cellular function and dysfunction.

Depending on cell type, environmental inputs, and disease, the cells in the human body can have widely different sizes. In recent years, it has become clear that cell size is a major regulator of cell function. However, we are only beginning to understand how the optimization of cell function determines a given cell's optimal size. Here, we review currently known size control strategies of eukaryotic cells and the intricate link of cell size to intracellular biomolecular scaling, organelle homeostasis, and cell cycle progression. We detail the cell size-dependent regulation of early development and the impact of cell size on cell differentiation. Given the importance of cell size for normal cellular physiology, cell size control must account for changing environmental conditions. We describe how cells sense environmental stimuli, such as nutrient availability, and accordingly adapt their size by regulating cell growth and cell cycle progression. Moreover, we discuss the correlation of pathological states with misregulation of cell size and how for a long time this was considered a downstream consequence of cellular dysfunction. We review newer studies that reveal a reversed causality, with misregulated cell size leading to pathophysiological phenotypes such as senescence and aging. In summary, we highlight the important roles of cell size in cellular function and dysfunction, which could have major implications for both diagnostics and treatment in the clinic.

Partial replacement of inorganic fertilizer with organic inputs for enhanced nitrogen use efficiency, grain yield, and decreased nitrogen losses under rice-based systems of mid-latitudes

In the rice-based system of mid-latitudes, mineral nitrogen (N) fertilizer serves as the largest source of the N cycle due to an insufficient supply of N from organic sources causing higher N losses due to varying soil and environmental factors. However, aiming to improve soil organic matter (OM) and nutrients availability using the best environmentally, socially, and economically sustainable cultural and agronomic management practices are necessary. This study aimed to enhance nitrogen use efficiency (NUE) and grain yield in rice-based systems of mid-latitudes by partially replacing inorganic N fertilizer with organic inputs. A randomized complete block design (RCBD) was employed to evaluate the effects of sole mineral N fertilizer (urea) and its combinations with organic sources—farmyard manure (FYM) and poultry compost—on different elite green super rice (GSR) genotypes and were named as NUYT-1, NUYT-2, NUYT-3, NUYT-4, NUYT-5, and NUYT-6. The study was conducted during the 2022 and 2023 rice growing seasons at the Rice Research Program, Crop Sciences Institute (CSI), National Agricultural Research Centre (NARC), Islamabad, one of the mid-latitudes of Pakistan. The key objective was to determine the most effective N management strategy for optimizing plant growth, N content in soil and plants, and overall crop productivity. The results revealed that the combined application of poultry compost and mineral urea significantly enhanced soil and leaf N content (1.36 g kg− 1 and 3.06 mg cm− 2, respectively) and plant morphophysiological traits compared to sole urea application. Maximum shoot dry weight (SDW) and root dry weight (RDW) were observed in compost-applied treatment with the values of 77.62 g hill− 1 and 8.36 g hill− 1, respectively. The two-year mean data indicated that applying 150 kg N ha⁻1, with half provided by organic sources (10 tons ha⁻1 FYM or poultry compost) and the remainder by mineral urea, resulted in the highest N uptake, utilization, and plant productivity. Thus, integrated management of organic carbon sources and inorganic fertilizers may sustain the productivity of rice-based systems more eco-efficiently. Further research is recommended to explore root and shoot morphophysiological, molecular, and biochemical responses under varying N regimes, aiming to develop N-efficient rice varieties through advanced breeding programs.

Nutrient Addition Enhances the Temperature Sensitivity of Soil Carbon Decomposition Across Forest Ecosystems.

Atmospheric nitrogen (N) and phosphorus (P) depositions have been shown to alter nutrient availability in terrestrial ecosystems and thus largely influence soil carbon cycling processes. However, the general pattern of nutrient-induced changes in the temperature response of soil carbon decomposition is unknown. Yet, understanding this pattern is crucial in terms of its effect on soil carbon-climate feedback. Here, we report that N and P additions significantly increase the temperature sensitivity of soil organic carbon decomposition (Q10) by sampling soils from 36 sites across China's forests. We found that N, P, and their co-addition (NP) significantly increased the Q10 by 11.3%, 11.5%, and 23.9%, respectively. The enhancement effect of nutrient addition on Q10 was more evident in soils from warm regions than in those from cold regions. Moreover, we found that nutrient-induced changes in substrate availability and initial substrate and nutrient availability mainly regulated nutrient addition effects. Our findings highlight that N and P deposition enhances the temperature response of soil carbon decomposition, suggesting that N and P deposition should be incorporated into Earth system models to improve the projections of soil carbon feedback to climate change.

CO2 and CH4 Concentrations in Headwater Wetlands Influenced by Morphology and Changing Hydro-Biogeochemical Conditions

Headwater wetlands are important sites for carbon storage and emissions. While local- and landscape-scale factors are known to influence wetland carbon biogeochemistry, the spatial and temporal heterogeneity of these factors limits our predictive understanding of wetland carbon dynamics. To address this issue, we examined relationships between carbon dioxide (CO2) and methane (CH4) concentrations with wetland hydrogeomorphology, water level, and biogeochemical conditions. We sampled water chemistry and dissolved gases (CO2 and CH4) and monitored continuous water level at 20 wetlands and co-located upland wells in the Delmarva Peninsula, Maryland, every 1–3 months for 2 years. We also obtained wetland hydrogeomorphologic metrics at maximum inundation (area, perimeter, and volume). Wetlands in our study were supersaturated with CO2 (mean = 315 μM) and CH4 (mean = 15 μM), highlighting their potential role as carbon sources to the atmosphere. Spatial and temporal variability in CO2 and CH4 concentrations was high, particularly for CH4, and both gases were more spatially variable than temporally. We found that groundwater is a potential source of CO2 in wetlands and CO2 decreases with increased water level. In contrast, CH4 concentrations appear to be related to substrate and nutrient availability and to drying patterns over a longer temporal scale. At the landscape scale, wetlands with higher perimeter:area ratios and wetlands with higher height above the nearest drainage had higher CO2 and CH4 concentrations. Understanding the variability of CO2 and CH4 in wetlands, and how these might change with changing environmental conditions and across different wetland types, is critical to understanding the current and future role of wetlands in the global carbon cycle.

Water Column Nitrogen Removal During Storms in a Low‐Order Watershed

AbstractWater column removal in streams is a nitrogen (N) cycling pathway that has been historically overlooked. Studies filling this knowledge gap have focused on the role of water column N removal in mid‐to‐large‐order rivers with consistently high suspended sediment concentrations. However, smaller streams may provide comparable suspended sediment concentrations during and after storm events, creating favorable conditions for water column N removal. To assess the presence, magnitude, and control of water column N removal during storms in low‐order watersheds, we measured water column denitrification and heterotrophic assimilatory N uptake rates at three locations in a Mid‐Atlantic watershed during five storm events of different magnitude, sediment loads, and nutrient availability. We found large variations in water column denitrification (0–5.56 mg N g−1 d−1) and assimilatory uptake (0.003–1.67 mg N g−1 d−1). Higher rates of N removal occurred during flow recession, with a correlation between suspended sediment organic matter content and denitrification. On average, denitrification rates in the water column were higher when flashy responses to storm events occurred. In contrast to denitrification, water column N removal rates (as both denitrification and heterotrophic assimilation) during storm events were comparable to those measured at baseflow in larger rivers. However, water column denitrification could only account for less than 10% of potential reach‐scale N removal during most of the storm events. Our findings provide insight into the ecological relevance of small stream water columns and suggest that more research is needed to understand the magnitude of stream water column processing on watershed‐scale N removal.

Asian knotweed’s impacts on soil chemistry and enzyme activities are higher in soils with low-nutrient status

Invasive alien plants such as Reynoutria spp. can drastically affect the composition of plant communities. Yet, whether and how these species also affect soil physicochemical properties and microbial functioning is still an unresolved question in the literature. Using a space-for-time substitution approach comparing invaded to uninvaded adjacent plots, we estimated the impacts of Reynoutria on soil biochemistry across nine contrasted sites in France by measuring soil carbon content, nutrient availability and enzyme activities. Soil under Reynoutria displayed higher carbon, nitrogen and phosphorus contents but no differences were detected regarding enzyme activities between invaded and uninvaded sites. Moreover, the magnitude of Reynoutria’s effects differed depending on local conditions, with greater effects when total carbon and phosphorus-related enzymes were relatively low. These data highlight that changes in soil nutrient availability might be primarily due to direct effects of Reynoutria on soil properties and microbial functioning. Higher impacts were observed in soils with low-nutrient status, suggesting a ‘niche construction ability’ of Reynoutria. Our results underscore the necessity of considering the context-dependency of Reynoutria on soil biochemistry and highlight that the impact of alien species belowground functioning depends on initial soil conditions.

Defining algal bloom phenology in Lake Erie

Elucidating the impact of global climate change on aquatic ecosystems, particularly through phenological shifts in primary producers, is critical for understanding ecological resilience. Here, we focus on the phenological shifts in chlorophyll as a proxy for algae biomass and primary production in aquatic ecosystems, specifically in Lake Erie as well as concentrations of the toxin microcystin. By tracking temporal changes in each, we identified key phenological phases important to estimate duration, magnitude, and intensity of harmful algal blooms (HABs). Determining which influential biotic and abiotic factors such as temperature, wind speed, nutrient availability, and climate change is most important, is a long-term management need for Lake Erie, which can be explored using our methodology. Our novel statistical framework employing Bayesian generalized additive mixed models described seasonal chlorophyll and particulate microcystin concentration from Lake Erie and our simple geometric method identified the start, peak, and end of algal blooms. This research enhances our understanding of the ecological effects of nutrient pollution on aquatic ecosystems and provides a repeatable method for determining phenological events without the need for user defined cutoffs which aids in the management and mitigation of HABs, safeguarding water quality in regions dependent on lakes for drinking water.

The spatiotemporal stability of plant diversity is disconnected from biomass stability in response to human activities in a South American temperate grassland

Human activities alter biomass, nutrient availability, and species dominance in grasslands, impacting their richness, composition, and biomass production. Stability (invariability in time or space) can inform the predictability of plant communities in response to human activities. However, this measure has been simplistically analyzed for temporal (interannual) changes in live biomass, disregarding their spatial stability and the temporal stability of other plant community attributes. Moreover, the simultaneous analysis of temporal and spatial stabilities of plant communities has been scarcely assessed. Here, we test how biomass removal and nutrient addition simultaneously modify the temporal and spatial stabilities of plant richness (α diversity), composition dissimilarity (β diversity), aboveground live biomass, and the role of plant species dominance in the stability responses. We conducted a factorial experiment of biomass removal (grazing, mowing, or intact -no removal-) and nutrient addition (unfertilized or fertilized with nitrogen, phosphorus, and potassium) in a temperate grassland of Argentina, South America. We replicated the experiment in 6 blocks over 10 years to estimate the temporal and spatial stabilities of the plant community. The spatiotemporal stability of plant richness and composition dissimilarity decreased in the intact grassland, while the temporal stability of live biomass increased, compared to the grazed and mowed grasslands. Nutrient addition reduced the spatiotemporal stability of live biomass and the spatial stability of plant richness. The stability of species richness as well as that of composition dissimilarity was negatively associated with plant dominance, while the live biomass stability was not. Our results suggest that simplifying the effect of biomass removal and nutrient addition on grassland stability is not feasible, as plant diversity stability responses are not surrogates for biomass stability. The contrasting spatiotemporal stability responses of plant diversity and biomass represent a step forward in predicting human activities' impact over time and across space in temperate grasslands.

Effects of Tillage Depth and Lime Application on Acidification Reduction and Nutrient Availability in Vertisol Soil

Cropland acidification seriously restricts sustainable agricultural development. The main purpose of this study was to determine whether deeper tilling could alleviate topsoil acidification to improve the quality of arable land. A soil column incubation experiment simulating tillage depths (10 cm, 30 cm and 50 cm) and lime addition was conducted to determine their effects on soil acidification improvement. The changes in soil pH, exchangeable acidity, ammonium nitrogen (NH4+-N), nitrate nitrogen (NO3−-N), available phosphorus (AP), and microbial phospholipid fatty acids (PLFA) were analyzed. Tillage depth, lime application, and their interaction all had significant impacts on soil pH. T50 (simulated tillage depth of 50 cm) and T50+Lime (simulated tillage depth of 50 cm plus lime) treatments significantly increased the topsoil pH from 5.41 to 6.35 and 7.12, respectively. T50 treatment significantly reduced the soil exchangeable acid content compared to the T10 treatment. The nutrient accumulation along soil column indicated that the T50 and T50+Lime treatments significantly increased NO3−-N and AP content in the >30–50 cm soil layer. Compared with T30, NO3−-N accumulation in the >30–50 cm soil layers of T50 and T50+Lime treatments was 6.62 and 7.93 times higher, respectively. The accumulation of AP in the >30–50 cm soil layers of the T50 and T50+Lime treatments was 1.33 and 1.54 times higher than in the T30 treatment, respectively. These findings imply tillage up to 50 cm without exogenous materials could be a potential measure to reduce topsoil acidification and increase nutrition availability of >30–50 cm soil layers. Tillage of up to 30 cm combined with lime application confers greater benefits, which would particularly impact crops with shallow root systems. Subsequent field experiments will be conducted to further investigate the efficacy of these strategies in enhancing crop yield.

CRISPR screens unveil nutrient-dependent lysosomal and mitochondrial nodes impacting intestinal tissue-resident memory CD8+ T cell formation

Nutrient availability and organelle biology direct tissue homeostasis and cell fate, but how these processes orchestrate tissue immunity remains poorly defined. Here, using invivo CRISPR-Cas9 screens, we uncovered organelle signaling and metabolic processes shaping CD8+ tissue-resident memory T (TRM) cell development. TRM cells depended on mitochondrial translation and respiration. Conversely, three nutrient-dependent lysosomal signaling nodes-Flcn, Ragulator, and Rag GTPases-inhibited intestinal TRM cell formation. Depleting these molecules or amino acids activated the transcription factor Tfeb, thereby linking nutrient stress to TRM programming. Further, Flcn deficiency promoted protective TRM cell responses in the small intestine. Mechanistically, the Flcn-Tfeb axis restrained retinoic acid-induced CCR9 expression for migration and transforming growth factor β (TGF-β)-mediated programming for lineage differentiation. Genetic interaction screening revealed that the mitochondrial protein Mrpl52 enabled early TRM cell formation, while Acss1 controlled TRM cell development under Flcn deficiency-associated lysosomal dysregulation. Thus, the interplay between nutrients, organelle signaling, and metabolic adaptation dictates tissue immunity.

Root puppet masters: Infauna shift trait-productivity relationships in submerged aquatic vegetation communities.

Submerged aquatic vegetation (SAV) growth can be limited by light and nutrient availability. Infauna are common inhabitants of SAV meadows. Their activity increases nutrient mobility, and they can positively affect plant growth, but we do not know their role in plant trait-biomass production relationships. We approached this problem using a 15-week insitu transplant experiment in the Baltic Sea with experimental additions of Macoma balthica, a sedentary bivalve, to experimental SAV communities. Experimental plant communities were tricultures with varying species composition, compiled from a pool of six different species, to create an experimental gradient of trait community weighted means that allowed us to detect changes more clearly in plant trait-biomass production relationships in response to the M. balthica treatment. We evaluated the relationships between plant height, leaf area, maximum root length (MMRL), specific root length (SRL), and SAV biomass production, then compared M. balthica condition index (soft tissue biomass [WW, mg]/valve length [mm]) to plant community leaf tissue nutrient concentrations (N (%DW), δ15N). Community biomass production was significantly related to plant height in the control treatment, but this relationship was decoupled in the M. balthica treatment, where community biomass production was instead significantly related to MMRL and SRL. This suggested a shift in the predominant SAV growth strategy, from height-related to root-related community biomass production. Leaf tissue δ15N was significantly related to M. balthica condition index. The growth of one species, Potamogeton perfoliatus, was significantly inhibited by the M. balthica treatment. Our results show that infauna have an important role in the plant traits related to community biomass production, and they have the potential to shape plant community structure via selective influences on different plant species.

Seasonal variations in composition and function of gut microbiota in grazing yaks: Implications for adaptation to dietary shift on the Qinghai-Tibet plateau.

Gut microbiome of animals is affected by external environmental factors and can assist them in adapting to changing environments effectively. Consequently, elucidating the gut microbes of animals under different environmental conditions can provide a comprehensive understanding of the mechanisms of their adaptations to environmental change, with a particular focus on animals in extreme environments. In this study, we compared the structural and functional differences of the gut microbiome of grazing yaks between the summer and winter seasons through metagenomic sequencing and bioinformatics analysis. The results indicated that the composition and function of microbes changed significantly. The study demonstrated an increase in the relative abundance of Actinobacteria and a higher ratio of Firmicutes to Bacteroidetes (F/B) in winter, this process facilitated the adaptation of yaks to the consumption of low-nutrient forages in the winter. Furthermore, the network structure exhibited greater complexity in the winter. Forage nutrition exhibited a significant seasonal variation, with a notable impact on the gut microbiota. The metagenomic analysis revealed an increase in the abundance of enzymes related to amino acid metabolism, axillary activity, and mucin degradation in the winter. In conclusion, this study demonstrated that the gut microbiome of grazing yaks exhibits several adaptive characteristics that facilitate better nutrient accessibility and acid the host in acclimating to the harsh winter conditions. Furthermore, our study offers novel insights into the mechanisms of highland animal adaptation to external environments from the perspective of the gut microbiome.

Water and nutrient availability modulate the salinity stress response in Olea europaea cv. Arbequina

Salinity stress represents a key factor for global agriculture. Plants can respond to salinity stress by adapting their physiology in different ways with the aim of limiting reductions in growth and development. Importantly, moisture retention capacity, permeability and nutrient availability of substrates represent critical variables for plants as they may further influence the effect of osmotic stress. Here, a multidisciplinary approach was applied to evaluate the role of two different substrates, peat and perlite, on 2-year-old potted cuttings of Olea europaea (cultivar Arbequina) under different salinity stress conditions (0, 100 and 200 mM NaCl). Biometric and physiological data indicate that plants potted in perlite (AP) generally present lower growth and photosynthetic rates when compared with peat (AS) in combination with salinity stress. Ion measurements indicate a rise in Na+ accumulation with increasing stress severity, which alters the ion ratio in both substrates. In addition, differences occurred in polyphenol contents, with a general increase in quinic acid and rutin contents in AS and AP samples, respectively. Metabolomic and biometric data were also coupled with metabarcoding analysis, which indicates that the moderate salinity treatment (100 mM NaCl, T100) reshaped the endophytic community of plants grown on both substrates. Taken together, the data suggest that the strategy used by a glycophytic species such as the olive tree to cope with salinity stress seems to be highly related to availability of water and nutrients. The lack of both may be simulated by perlite, enhancing the effect of salinity stress response in woody plants. Lastly, applying the beneficial endophytic bacterial taxa identified here could represent a step forward in increasing plant defence and nutrient uptake and reducing inputs for modern and more sustainable agriculture.

Towards data-driven tropical forest restoration: Uncovering spatial variation, interactions and historical management effects on nutrients along soil depth gradients

Data scarcity hinders global conservation initiatives, and there is a pressing demand for spatially detailed soil and species data to restore human-altered tropical forests. We, therefore, aimed to generate foundational soil environment and habitat suitability data and high-resolution soil maps to aid restoration efforts in a critical ecosystem of the threatened Indo-Burma Biodiversity Hotspot region, i.e., Tarap Hill Reserve (THR) in Bangladesh. Using multiple soil depths and vegetation data, we answered three major questions. (QI) How do spatial distribution and the relationships between soil physicochemical properties (i.e., pH, sand, silt, and clay percentages, organic carbon, and nutrients – N, P, K, Ca, Mg, Fe, and Zn) vary from surface to deeper soils (top 1 m)? (QII) How do different forest management interventions, i.e., old-growth forests (OGF), mixed plantations (MXP), and mono-specific plantations (MOP), influence soil properties, nutrients, and carbon in different soil depths? (QIII) Which spatial interpolation methods are best suited for making more accurate soil property predictions at different depths? Our analyses reveal decreasing availability of critical nutrients like N, P, Mg, and Fe from surface to subsurface soils, while pH, soil organic carbon, and clay content increased with depth. Several soil properties showed significant interactions, although the strength of the interactions changed from surface to deeper soils. Besides, forest management interventions significantly influenced soil functionality by having higher nutrient availability and soil organic carbon in OGF than MXP and MOP. Predictive performances of the deterministic and geostatistical interpolation methods varied for different soil properties in different soil depths, and soil maps revealed substantial heterogeneity in the distribution of soil properties across space and along depths. This study represents a pioneering step in data-driven tropical forest restoration, and our novel findings and high-resolution soil maps could guide future studies focusing on species habitat preferences, restoration ecology, and spatial conservation planning in the Indo-Burma Biodiversity Hotspot region and elsewhere in the tropics.

Cocoa pod husk-derived organic soil amendments differentially affect soil fertility, nutrient leaching, and greenhouse gas emissions in cocoa soils

The depletion of soil nutrients and decline in yields on cocoa farms in west Africa over time force farmers to abandon their farms and look for new fertile land, thereby contributing to deforestation. Cocoa pod husks (CPH) are a major farm waste representing considerable export of nutrients from cocoa soils, particularly P and K. Here, the impacts of soil amendment with raw CPH residues, CPH compost, CPH biochar, or a CPH compost-biochar mixture on soil fertility, greenhouse gas (GHG) emissions, and nutrient losses via leaching were assessed in two laboratory experiments using two major soil types used for cocoa cultivation in Ghana (an acidic Ferralsol and an alkaline Nitisol). In Experiment 1, soil nutrient availability and CO2 and N2O emissions were quantified, whereas simulation and quantification of nutrient leaching were conducted in Experiment 2. Soil pH increased from 4.8 and 8.6 by 1.4- and 1.1-folds on average in amended Ferralsols and Nitisols, respectively. Soil electrical conductivity increased in soils amended with CPH compost and/or biochar. Addition of raw CPH caused remarkable microbial immobilisation of N and reduced N availability and leaching, whereas CPH compost and/or biochar addition increased soil nitrate availability but reduced soil ammonium availability. Leaching of Ca in Nitisols was reduced when CPH biochar was included in the soil amendment. While soil K availability increased in all amended soils, most notably when CPH biochar was included, soil P and Ca availabilities were greatest where CPH compost was included. Soil total GHG emission (CO2 plus N2O) increased in all amended Ferralsols and the Nitisols amended with CPH compost or raw CPH, with the latter remarkably increasing soil CO2 emission by up to 14.8-folds. Compared to sole CPH compost amendment, CPH compost-biochar mixture amendment reduced soil total GHG emission and N and P leaching. These findings show that composted and/or pyrolysed CPH can be judiciously used to enhance soil fertility in cocoa farms, particularly in acidic soils. Pyrolysed CPH is especially beneficial for reducing soil nutrient leaching and GHG emissions and thus for increasing the sustainability of cocoa production in Ghana and west Africa.

Local sediment amendment can potentially increase barley yield and reduce the need for phosphorus fertilizer on acidic soils in Kenya

Soil acidification and low nutrient availability are two major challenges facing agriculture in most regions of East Africa, resulting in aluminum toxicity and poor crop yields. The amendment of local sediments to cropland can potentially alleviate these challenges, but responses are variable. In this study, we investigated the potential of two different local sediments influenced by volcanic deposits to increase soil pH, Si and P availability and reduce Al toxicity, thereby improve barley yield. Hence, a field experiment was established in Eldoret, Western Kenya, using 1% and 3% addition by weight of two sediments in barley cultivated plots. The Baringo 3% amendment significantly increased soil pH (from 4.7 to 7.0), the available P content (from 0.01 mg g−1 to 0.02 mg g−1) and decreased the Al availability (from 3.03 mg g−1–2.17 mg g−1). This resulted in a barley yield of 4.7 t/ha (+1061%). The Nakuru 3% and Baringo 1% amendments increased yield to 2–3 t/ha, while the Nakuru 1% did not significantly increase yield. These results highlight that, from a biophysical perspective, there are natural and local opportunities to reduce soil acidification and to partly replace mineral fertilizer, but its magnitude depends on the sediment and the amendment rate.

Incubation Experiments Characterize Turbid Glacier Plumes as a Major Source of Mn and Co, and a Minor Source of Fe and Si, to Seawater

AbstractGlaciers are a source of fine‐ground rock flour to proglacial and coastal marine environments. In these environments, suspended rock flour may affect light and (micro)nutrient availability to primary producers. Due to high loads of glacier rock flour, the particulate metal load of glacier runoff typically exceeds the dissolved metal load. As glacier rock flour is deposited in downstream environments, short‐term exchange between particulate and dissolved metal phases may have a moderating influence on dissolved metal concentrations. Here we compare the behavior of iron (Fe), manganese (Mn), cobalt (Co) and silica (Si) following the addition of different glacier‐derived sediments into seawater under conditions of varying sediment load (20–500 mg L−1), time (0.5 hr–21 days), temperature (4–11°C) and light exposure (dark/2,500 Lux). Despite a moderately high labile Fe content across all particle types (0.28–3.50 mg Fe g−1 of dry sediment), only 0.27–7.13 μg Fe g−1 was released into seawater, with less efficient release as sediment load increased. Conversely, Si, Mn, and Co exhibited a more constant rate of release, which was less sensitive to sediment load. Dissolved Si release was equivalent to 17% ± 22% of particulate amorphous Si after 1–2 weeks. Dissolved Mn concentrations in most incubations exceeded dissolved Fe concentrations within 1 hr despite labile Mn content being 12‐fold lower than labile Fe content. Our results show the potential for glacier‐derived particles to be a large source of Mn and Co to marine waters and add to the growing evidence that Mn may be the bio‐essential metal most affected by glacier‐associated sources.

Assessing Target of Rapamycin (TOR) activity in the diatom Phaeodactylum tricornutum using commercially available materials

Target of rapamycin (TOR) is a conserved protein kinase that regulates the balance between catabolic and anabolic processes in response to nutrient availability. Although the central role of TOR kinase in nutrient stress responses is well-recognized, little is known about the molecular basis of TOR signaling in ecologically important secondary algae with plastids of red algal origin, such as diatoms, as assessing in vivo TOR kinase activity is a difficult task. To assess TOR kinase activity, the phosphorylation status of downstream components, such as ribosomal protein S6 (RPS6), must be measured. Unlike for model organisms, an antibody that detects phosphorylated (P-) RPS6 in diatoms is not commercially available. Therefore, we developed a convenient method in which P-RPS6 and non-P-RPS6 were detected via Phos-tag affinity electrophoresis and immunoblotting with a commercial antibody that cross-reacts with RPS6 (both P- and non-P-RPS6) in the diatom, Phaeodactylum tricornutum. Using this Phos-tag-based method, we observed a dose-dependent decrease in the P-RPS6/total RPS6 ratio in P. tricornutum cells treated with the TOR kinase inhibitor, AZD-8055. We also observed a reduction in the P-RPS6/total RPS6 ratio during the nitrogen-deficient culture of P. tricornutum, which indicated the inactivation of TOR kinase in response to nitrogen deficiency. Finally, we demonstrated the potential application of the Phos-tag-based method to other ecologically, evolutionarily, and industrially important secondary algae, such as Nannochloropsis oceanica (Stramenopiles), the haptophyte Tisochrysis lutea, and Euglena gracilis (Euglenid). As all experimental materials are commercially available, the Phos-tag-based method can be used to promote studies on TOR in diverse algae in different contexts.