Spacecraft parts accumulate damage during operation and defects that are invariably present even in new designs may grow. This leads to changes in the behavior of individual parts of the space vehicle and, consequently, to the risk of fracture. A more accurate assessment of spacecraft safety requires internal defects to be included in the material models under consideration. One of the main hazardous effects on space objects is multiple temperature heating and cooling due to periodic action of solar rays. This paper presents a study of thermal conduction of media containing cracks. It is carried out with the help of a technique developed by the authors to determine the effective thermal conductivity of materials and based on approximate numerical solution of the steady-state thermal conduction problem for a three-dimensional medium with cracks by the boundary element method. This technique allows to obtain the distribution of the temperature field and heat flux density at any point of the body under consideration, as well as to calculate the effective parameters of materials with high accuracy at relatively low calculation time using ordinary personal computers of average power. The basis of the numerical method presented in this paper is the decomposition of the desired solution into a series of some pre-calculated analytical solutions of the heat conduction equations. The dependence of the effective thermal conductivity on the density of thermally insulated cracks was considered. The formula of this dependence is proposed. Verification of the proposed methodology was carried out by comparing the numerical results of a number of problems with the results of other authors.