Number Of Species Research Articles

Effects of Vegetable Cover on the Regeneration Process in Degraded Dry Forest in Brazil

ABSTRACTThe Brazilian Caatinga is among the most diverse dry forests in the world, yet half of its original coverage has been degraded. Natural regeneration is influenced by climatic and edaphic conditions, as well as the existing adult stratum. Despite its significance, this process remains poorly understood in the Caatinga. Thus, our study aimed to analyze how anthropogenic disturbance, vegetation cover, and soil properties affect the regenerating stratum under different levels of Caatinga vegetation cover. The research was conducted in the driest region of Brazil. The selected sites represent low (Area I) and high (Area II) normalized difference vegetation index. Six vegetable plots (50 × 20 m each) were delimited to study adult stratum, and four vegetable plots (10 × 10 m each) to regeneration stratum. Topsoil was sampled in all vegetable plots. Our results reveal interactions between soil characteristics and the adult and regenerating strata. Area II exhibited higher diversity and a greater number of exclusive species, while Area I was dominated by species more resistant to limiting conditions, such as Aspidosperma pyrifolium Mart. & Zucc. The C and N content in the soil showed a positive and significant correlation with the diversity of the regenerating stratum. The data suggest that the area with less vegetation cover, richness, and diversity shows signs of desertification.

Overview of myrmecological studies and a checklist of the ants (Hymenoptera, Formicidae) of the Democratic Republic of Congo.

The production of species checklists is fundamental to setting baseline knowledge of biodiversity across the world and they are invaluable for global conservation efforts. The main objective of this study is to provide an up-to-date extensive checklist of the ants of the Democratic Republic of Congo (DRC), the largest country in sub-Saharan Africa, based on available literature to serve as a foundation for future research and ant faunistic developments. We gathered the literature available to us, most of it compiled from the Global Ant Biodiversity Informatics (GABI) Project and treated the data to province level when possible. We also offer insight into who, when and where contributions have emerged to the current knowledge of the ants of the DRC and each of its 26 provinces. The current list is restricted to valid species and subspecies, discarding morphospecies and some misidentified taxa. The list comprises eight subfamilies, 64 genera and 736 species, the highest species diversity for a country located within the Afrotropical realm.

Ash dieback: A single-species catastrophe or a cascade of ecological effects in the ground flora?

Climate change and human activities have accelerated the spread of non-native species, including forest pests and pathogens, significantly contributing to global biodiversity loss. Pathogens pose a significant threat to forest ecosystems due to a lack of coevolution with native hosts, resulting in ineffective defence mechanisms and severe consequences for the affected tree species. Ash dieback, caused by the fungus Hymenoscyphus fraxineus, is a relatively new invasive forest pathogen threatening ash (Fraxinus excelsior) with mortality rates in northern Europe reaching up to 80 %. The loss of ash due to dieback has severe ecological implications, potentially leading to an extinction cascade as ash provides crucial habitats and resources for many organisms. Despite this, the consequences of ash dieback on associated communities are largely unknown. To address this, we analysed changes in species richness, vegetation structure, and composition in 82 permanent vegetation plots across 23 Norwegian woodlands. We compared data collected before and 10–14 years after the emergence of ash dieback. In these woodlands, ash significantly declined in cover, leading to changes in tree species composition and facilitating the establishment of other woody tree species like hazel (Corylus avellana) and the invasive species sycamore (Acer pseudoplatanus). Despite these changes in the tree species composition, no significant alterations were observed in the understory plant community, indicating a degree of ecosystem resilience or a lagging community response. At this point, and with our focus on the vascular plants, we do not find support for cascading effects due to ash dieback. However, our findings demonstrate that one invasive species is facilitating the expansion of another, raising concerns about potential ecological imbalance and cascading effects in the future.

Elevational patterns of bird alpha and beta diversity in Haba Snow Mountain, Southwestern China: Implication for conservation

Understanding environmental patterns of species diversity is essential for nature reserve planning and biodiversity conservation. In this study, we explored the birds’ alpha and beta diversity along the elevational gradients in Haba Snow Mountain Nature Reserve (hereafter, HBSM), a global biodiversity hotspot, and studied which environmental factor is the main driver in explaining alpha and beta diversity patterns. Our results indicated that taxonomic, functional, and phylogenetic alpha diversity consistently exhibited hump-shaped patterns with similar peaks. After controlling for species richness, both functional and phylogenetic alpha diversity increased with elevation, and the peaks at 3400–3700 m. Mean pairwise functional distance remained nearly constant along the elevation band, whereas mean pairwise phylogenetic distance shown hump-shaped pattern, and the predicted MPD peaked at the fifth band (3100–3400 m a.s.l). The functional and phylogenetic structure of bird communities in HBSM were more clustered along the elevation gradients, suggesting environmental filtering likely drove the assembly processes. Additionally, primary productivity (NDVI and/or habitat heterogeneity) and/or precipitation were robust predictors of variation in most diversity metrics. For multiple-site beta diversity, we observed that high turnover component in taxonomic, functional, and phylogenetic dimensions, indicating distinct bird assemblages across various elevational bands. In pairwise beta diversity, the spatial turnover of taxonomic and phylogenetic aspects was higher than nestedness, revealing species replacement occurs relatively frequently between evolutionarily related species with similar niche and functional traits. Overall, our findings highlight the importance of considering both different dimensions and multifaceted diversity when assessing elevational patterns of bird diversity. This study also provides valuable insights into the structuring mechanisms of bird communities and informs conservation planning along elevational gradients in HBSM, and offers a comprehensive case on species richness along elevational gradients.

Involving citizens in monitoring the Kunming–Montreal Global Biodiversity Framework

AbstractThe Kunming–Montreal Global Biodiversity Framework (GBF) and its monitoring framework aims to reverse the decline of nature. The GBF tasks governments to report progress towards 23 targets and four goals but also “invites Parties and relevant organizations to support community-based monitoring and information systems and citizen science” to improve information for decision-making and build support for conservation efforts throughout society. We assessed how Indigenous Peoples, local communities and citizen scientists and professional scientists can help monitor the GBF. Of the 365 indicators of the GBF monitoring framework, 110 (30%) can involve Indigenous Peoples, local communities and citizen scientists in community-based monitoring programmes, 185 (51%) could benefit from citizen involvement in data collection and 180 (49%) require scientists and governmental statistical organizations. A smaller proportion of indicators for GBF targets are amenable to citizen monitoring than for the previous Aichi targets or other multilateral environment agreements—largely because 196 GBF indicators are analytically complex (54%) and 175 require legislative overview (48%). Greater involvement of citizens in the GBF would increase societal engagement in international agreements, harness knowledge from those living close to nature to fill data gaps and enhance local to national decision-making based on improved information, leading to better conservation actions.

Morphological Characterization of Culex Quinquefasciatus (Diptera: Culicidae) Pupae in the Eastern Province of Saudi Arabia.

Over the last 30 years, several mosquito-borne diseases have spread worldwide, threatening human and animal health, including lymphatic filariasis. Lymphatic filariasis is a major public health issue in tropical regions like Saudi Arabia, caused by parasitic worms. The parasitic worms Wuchereria bancrofti and Brugia malayi are transmitted by Culex quinquefasciatus. Cx. quinquefasciatus is a potential vector for various arboviruses like encephalitis virus and West Nile virus, along with protozoa like Plasmodium relictum that cause bird malaria. With the increasing number of mosquito species, there is an increased need for additional species identification. More attention is being directed to the immature stage, specifically the pupae, due to their valuable characteristics for species identification. Cx. quinquefaciatus, one of the nine Culicine species found in Saudi Arabia, lacks a complete description of its pupal stage and only has partial descriptions of other developmental stages, making identification challenging. This study aimed to investigate the morphological characteristics of Cx. quinquefaciatus pupae, focusing on the cephalothorax, trumpet, abdomen, paddle, and genital lobes, as well as the distribution and arrangement of setal branching and chaetotaxy. The pupae were collected from Qaryat Al Ulya Governorate, Eastern region, KSA, and maintained in a Biology Laboratory at the University of Hafr Al Batin from September to October 2022. The findings of this study have provided the essential characteristics regarding the distinguishing features of Cx. quinquefaciatus pupae to distinguish it from other closely related species. This identification could assist field entomologists in enhancing their efficiency by classifying mosquitoes during virus outbreaks.

Diversity of anurans and use of microhabitats in three vegetation coverages of the Santuario de Flora y Fauna Los Colorados, Colombian Caribbean

This study aimed to determine anuran diversity and the use of microhabitats in 3 vegetation covers in the Santuario de Flora y Fauna Los Colorados. Five field trips of 6 days each were made, 2 days and 2 nights in each cover: forest, pasture, and crop. Sampling was carried out with the visual encounter inspection technique under a randomized design by random walks with manual capture. A total of 19 species were recorded, 14 in the forest, 13 in pasture, and 12 in crop. Pasture and crop were the vegetation covers with the greatest similarity of species. This work updates the list of anuran species recorded in the management plan of the Santuario de Flora y Fauna Los Colorados 2018-2023. The greatest number of anuran species was associated with leaf litter, "jagüeyes", and soils. The transformation of the landscape as a result of agriculture and cattle ranching generated changes in the richness, abundance, composition, and use of microhabitats of the anurans present in the Santuario de Flora y Fauna Los Colorados.

A primer of community ecology using the R language

AbstractCommunity ecology beginners often struggle to understand theories expressed in complex mathematical formulas and to master computer programming. To remedy this situation, this article provides a practical, R‐based introduction to community ecology by illustrating core concepts (vital rates, carrying capacity, density dependence) and models that can be used to explore the patterns of species abundance and diversity. The structure of this article consists of three modeling exercises, each asking a general question that can be answered by a combination of theory and R programming: (1) what determines the abundance of species, and what makes a population persist and go extinct?; (2) what determines the distribution of species and species diversity?; (3) what determines the relative abundance of species and what allows species to coexist? Through the exercises, I discuss the following five concepts and ideas that provide valuable insights into the questions: (i) the tragedy of the commons, (ii) the theory of island biogeography, (iii) competitive exclusion, (iv) the neutral theory of biodiversity, and (v) frequency dependence. These materials are thus designed to guide the reader in developing an intuition for ecological thinking that will help capture the essence of the global environmental and biodiversity crisis. Although this article does not delineate the scope and depth of the vast field of community ecology, I hope that it will motivate the reader to step up to a more formal introduction to community ecology.

High phenotypic diversity correlated with genomic variation across the European Batrachochytrium salamandrivorans epizootic.

Recognizing the influence of pathogen diversity on infection dynamics is crucial for mitigating emerging infectious diseases. Characterising such diversity is often complex, for instance when multiple pathogen variants exist that interact differently with the environment and host. Here, we explore genotypic and phenotypic variation of Batrachochytrium salamandrivorans (Bsal), an emerging fungal pathogen that is driving declines among an increasing number of European amphibian species. For thirteen isolates, spanning most of the known temporal and geographical Bsal range in Europe, we mapped phenotypic diversity through numerous measurements that describe varying reproductive rates in vitro across a range of temperatures. Bsal isolates are revealed to have different thermal optima and tolerances, with phenotypic variation correlating with genomic diversity. Using a mechanistic niche model of the fire salamander (Salamandra salamandra) as an example, we illustrate how host steady-state body temperature and Bsal thermal range variation may influence pathogen growth through space and time across Europe. Our combined findings show how the identity of emergent pathogen variants may strongly influence when and which host populations are most at risk.

An Ecological Survey of Chiggers (Acariformes: Trombiculidae) Associated with Small Mammals in an Epidemic Focus of Scrub Typhus on the China-Myanmar Border in Southwest China.

Chiggers (chigger mites) are a group of tiny arthropods, and they are the exclusive vector of Orientia tsutsugamushi (Ot), the causative agent of scrub typhus (tsutsugamushi disease). Dehong Prefecture in Yunnan Province of southwest China is located on the China-Myanmar border and is an important focus of scrub typhus. Based on the field surveys in Dehong between 2008 and 2022, the present paper reports the infestation and ecological distribution of chiggers on the body surface of rodents and other sympatric small mammals (shrews, tree shrews, etc.) in the region for the first time. The constituent ratio (Cr), prevalence (PM), mean abundance (MA), and mean intensity (MI) were routinely calculated to reflect the infestation of small-mammal hosts with chiggers. Additionally, the species richness (S), Shannon-Wiener diversity index (H), Simpson dominance index (D), and Pielou's evenness index (E) were calculated to illustrate the chigger community structure. Preston's log-normal model was used to fit the theoretical curve of species abundance distribution, and the Chao 1 formula was used to roughly estimate the expected total species. The "corrplot" package in R software (Version 4.3.1) was used to analyze interspecific relationships, and the online drawing software was used to create a chord diagram to visualize the host-chigger associations. From 1760 small-mammal hosts, a total of 9309 chiggers were identified as belonging to 1 family, 16 genera, and 117 species, with high species diversity. The dominant chigger species were Leptotrombidium deliense, Walchia ewingi, and Gahrliepia longipedalis, with a total Cr = 47.65% (4436/9309), among which L. deliense is the most important vector of Ot in China. The overall infestation indexes (PM, MA, and MI) and community parameters (S, H, and E) of chiggers in the mountainous areas and outdoors were higher than those in the flatland areas and indoors, with an obvious environmental heterogeneity. Leptotrombidium deliense was the dominant species in the flatland and indoors, while G. longipedalis was the prevalent species in the mountainous and outdoor areas. The species abundance distribution of the chigger community conformed to log-normal distribution with the theoretical curve equation: S(R)'=28e-[0.23(R-0)]2, indicating the existence of many rare species and only a few dominant species in the community. The expected total number of chigger species was roughly estimated to be 147 species, 30 more than the 117 species actually collected, suggesting that some uncommon species may have been missed in the sampling survey. The host-parasite association analysis revealed that one host species can harbor different chigger species, and one chigger species can parasitize different host species with low host specificity. A positive or negative correlation existed among different chigger species, indicating a cooperative or competitive interspecific relationship. The species diversity of chiggers is high in Dehong on the China-Myanmar border, and a large host sample is recommended to find more uncommon species. There is an obvious environmental heterogeneity of the chigger community, with different species diversity and dominant species in different environments. The low host specificity of chiggers and the occurrence of a large number of L. deliense in Dehong, especially in flatland areas and indoors, would increase the risk of persistent transmission of scrub typhus in the region.

Long‐Term Stability of Marine Forests Facing Moderate Gradual Warming in a Remote Biodiversity Hotspot

ABSTRACTAimOcean warming and marine heatwaves are rapidly reconfiguring the composition of seaweed forests—the world's largest coastal vegetated biome. Seaweed forest responses to climate change in remote locations, which constitute the majority of the forest biome, remain however poorly quantified. Here, we examine the temporal stability of the seaweed forests across a global seaweed biodiversity hotspot where several species are predicted to undergo severe range contractions in this century.LocationWestern south coast of Australia.MethodsSeaweed forest canopies were censused at 18 shallow (< 10 m) sheltered reefs between 1997 and 2006 and again between 2021 and 2024 (six sites per location). We also surveyed 24 sites to examine whether temporal changes differed over gradients of wave exposure and depth.ResultsSeaweed forest canopies across all locations showed surprisingly little change in biomass, cover, stand density and species composition over two decades, with strong spatial structuring across depth and exposure gradients persisting over time. The average thermal affinity of forest canopies (i.e., the community temperature index, CTI) did not track warming, suggesting that factors other than temperature (e.g., wave exposure and depth) are more important drivers of forest stand structure and/or that key thermal thresholds have not yet been crossed. Forests in the location with the most pronounced warming exhibited increased thermal bias over time (total bias of 0.8°C–2.2°C), indicating they were dominated by species with cooler affinities than their local temperatures.Main ConclusionsThe greater thermal bias in forests at the warmer edge of southern Australia suggests these will be more susceptible to future warming‐related compositional changes than forests in cooler locations. The relative stability we found contrasts with a current context of rapidly changing seaweed forests nationally and globally, highlighting the need to deepen our ecological understanding of the region so that future changes to its unique biodiversity and ecosystem services can be predicted and mitigated.

Adaptation of skin structures to environmental variations in anurans from southern and southwestern China.

Variations in skin structures can possibly reflect local adaptation to distinct environmental factors. As the primary interface with the surrounding environment, amphibian skin undergoes phenotypic innovations that play a key role in protection, water absorption, and respiration. However, the effects of environmental factors on skin structures have been examined in only a limited number of species. Here, we conducted a comparative analysis of the skin structures of 102 Chinese anuran species across varying geographical distributions and habitat types. Our results revealed that the total volume of granular glands and capillary density in the dorsal skin significantly increased with increasing latitude. We also found that the thickness of calcified layers in both dorsal and ventral skin was positively correlated with annual temperature and negatively correlated with humidity. Additionally, terrestrial species exhibited the largest dorsal granular gland, whereas arboreal species had the smallest one. Likewise, the largest dorsal mucous gland was observed in aquatic species, while the smallest was found in terrestrial species. These results highlighted the importance of understanding the relationship between skin phenotypes and environmental variables and thus providing conservation strategies based on the evolutionary adaptations in anurans. Our study can contribute to the broader knowledge of evolutionary biology in anurans by demonstrating how specific skin traits are linked to survival and fitness across various ecological contexts.

Using key and critical biodiversity areas to identify gaps in the protected area network in the Limpopo Province, South Africa

AbstractThe Kunming‐Montreal Global Biodiversity Framework (KMGBF) commits signatories to expand the global protection of land and sea by 30% in 2030. Additionally, in South Africa, a local target set in 2016 aims to conserve 16% of terrestrial areas using protected areas within a two‐decade time frame. Concurrently, it is crucial to recognize and prioritize sites where biodiversity must be protected immediately. This recognition has given rise to global Key Biodiversity Areas (KBAs) and South Africa's Critical Biodiversity Areas (CBAs). KBAs are sites of significance for the global persistence of biodiversity. In South Africa, CBAs delineate primarily or partially natural areas needing management. Despite their significance, an assessment of KBAs and CBAs in South Africa's Limpopo province, specifically the Vhembe District, is lacking. Employing GIS techniques, our evaluation focused on the coverage, size, and distribution of protected areas in the Vhembe District. Our analysis revealed that protected areas cover an impressive 38% of the Vhembe District. Critical Biodiversity Areas cover 9465 km2 (36%) of the region. Alarmingly, 70% (6809 km2) of these CBA sites lack protection. Additionally, KBAs cover 30% of the region, with 39% of sites covering approximately 3273 km2 and laying outside the protected area network, rendering them entirely unprotected. Sluggish protected areas establishment rates and a deficiency in the strategic targeting of significant sites have resulted in over 10,000 km2 of land warranting protection, particularly along the Soutpansberg Mountain Range. Moreover, South Africa's national target, established in 2016, which aims to protect a mere 16% of terrestrial areas by 2036, falls short of the global KMGBF target, reinforcing the urgency for an update in national policy and embracing other conservation methods. These findings suggest that, despite the commendable 38% protection of the district, setting a precedent for the rest of the country, there is a crucial need for municipalities, districts, and provinces to draw insights from the shortfalls of the Vhembe District.

Mycology of Fodder Plants in Different Areas of Azerbaijan the Results of Studies Devoted to the Evaluation

Both cultivated and wild fodder plants are the main group of plants necessary for the development of animal husbandry. Although it is impossible to give a specific number about the number of species of fodder plants in Azerbaijan, there is no doubt that their number of species is expressed in hundreds. Thus, the number of species of annual grasses in the CIS includes up to 1000 species. As it is known, some species mentioned above as fodder plants also carry other qualities. For example, corn, sunflower, wormwood, three-leaf clover, etc. plants are also medicinal plants and are used as diuretics, pain relievers, etc. in folk medicine. It is widely used as a tool with properties. At the same time, due to these properties, these plants have become the subject of various aspects (botanical, pharmacological, mycological, etc.) studies, and this situation is still ongoing.

RERconverge Expansion: Using Relative Evolutionary Rates to Study Complex Categorical Trait Evolution.

Comparative genomics approaches seek to associate molecular evolution with the evolution of phenotypes across a phylogeny. Many of these methods lack the ability to analyze non-ordinal categorical traits with more than two categories. To address this limitation, we introduce an expansion to RERconverge that associates shifts in evolutionary rates with the convergent evolution of categorical traits. The categorical RERconverge expansion includes methods for performing categorical ancestral state reconstruction, statistical tests for associating relative evolutionary rates with categorical variables, and a new method for performing phylogeny-aware permutations, "permulations", on categorical traits. We demonstrate our new method on a three-category diet phenotype and we compare its performance to binary RERconverge analyses and two existing methods for comparative genomic analyses of categorical traits: phylogenetic simulations and a phylogenetic signal based method. We present an analysis of how the categorical permulations scale with the number of species and the number of categories included in the analysis. Our results show that our new categorical method outperforms phylogenetic simulations at identifying genes and enriched pathways significantly associated with the diet phenotypes and that the categorical ancestral state reconstruction drives an improvement in our ability to capture diet-related enriched pathways compared to binary RERconverge when implemented without user input on phenotype evolution. The categorical expansion to RERconverge will provide a strong foundation for applying the comparative method to categorical traits on larger data sets with more species and more complex trait evolution than have previously been analyzed.

Evidence for ecological tuning of anuran biofluorescent signals

Although biologists have described biofluorescence in a diversity of taxa, there have been few systematic efforts to document the extent of biofluorescence within a taxonomic group or investigate its general significance. Through a field survey across South America, we discover and document patterns of biofluorescence in tropical amphibians. We more than triple the number of anuran species that have been tested for this trait. We find evidence for ecological tuning (i.e., the specific adaptation of a signal to the environment in which it is received) of the biofluorescent signals. For 56.58% of species tested, the fluorescence excitation peak matches the wavelengths most abundant at twilight, the light environment in which most frogs are active. Additionally, biofluorescence emission spans both wavelengths of low availability in twilight and the peak sensitivity of green-sensitive rods in the anuran eye, likely increasing contrast of this signal for a conspecific receiver. We propose an expanded key for testing the ecological significance of biofluorescence in future studies, providing potential explanations for the other half of fluorescent signals not originally meeting formerly proposed criteria. With evidence of tuning to the ecology and sensory systems of frogs, our results suggest frog biofluorescence is likely functioning in anuran communication.

Non‐native invasive plants in tropical dry forests: a global review of presence, impacts, and management

Tropical dry forests (TDF) are among the most‐threatened terrestrial ecosystems, experiencing ongoing conversion to agricultural fields, pasture, and human settlements. Human disturbances are often precursors to invasion of ecosystems by non‐native species, but research on invasion patterns in tropical ecosystems is sparse, and there is no comprehensive synthesis of invasive species in TDF. We conducted a review of published scientific literature to catalog and synthesize information about invasion by non‐native plants in TDF ecosystems across the globe, drawing out patterns in the invasion of these ecosystems. We found that 130 invasive plant species were documented as present in TDF, but only 25 of these species were mentioned in three or more articles. Almost all 25 of these more‐studied invasive species—mostly pasture grasses, woody legumes, and climbers—have been intentionally cultivated for agricultural or ornamental purposes. Many of these plants are native to open‐canopy savanna or forest edge habitats and benefit from human‐altered disturbance regimes (burning, grazing, and fuelwood and timber harvesting) of TDF fragments within agricultural landscapes. Field studies show that management approaches incorporating invasive removal, native plantings, and reduction in agricultural disturbance (e.g. ungulate fencing and fire control) simultaneously are often the most successful at reducing invasive plant cover. However, management studies in TDF have focused on a limited number of invasive species, and most were conducted in India and Hawaii. Global differences in TDF soils, natural fire regimes, and historic and current land use by humans influence modern biogeographic patterns of invasion and the feasibility of restoration options.

CERASTIUM MAHMUTKILINCII (CARYOPHYLLACEAE), A NEW SPECIES FROM TÜRKIYE

Cerastium (Caryophyllaceae) is a taxonomically difficult genus of over than 100 species. The flora of Türkiye include 30 species of Cerastium, of which 9 are endemics. A further species (Cerastium mahmutkilincii sp. nov.), belonging to sect. Cerastium subsect. Grandiflora, was proposed here based on a morphological investigation of herbarium specimens. The new species is only known from the Erbaa-Tokat region (North Anatolia) and it is similar to C. szowitsii and C. araraticum, but differs from both by the hairy filaments and sparsely glandular (eglandular hairy in both C. szowitsii and C. araraticum) and multicellular hairy stem indumentum (usually simple hairy in C. szowitsii and C. araraticum). It also differs from C. araraticum by a hairy claw at the base (glabrous in C. araraticum). Data about the ecology and phenology, as well as a identification key of the Turkish members of subsect. Grandiflora are also given; lacking sufficient data, the IUCN conservation status was assessed as DD (Data Deficient). As a result, with the new species in this article, the number of Cerastium species in Türkiye has increased to 31 and the number of endemic taxa to 10.

Classes and phyla of the kingdom Fungi

AbstractFungi are one of the most diverse groups of organisms with an estimated number of species in the range of 2–3 million. The higher-level ranking of fungi has been discussed in the framework of molecular phylogenetics since Hibbett et al., and the definition and the higher ranks (e.g., phyla) of the ‘true fungi’ have been revised in several subsequent publications. Rapid accumulation of novel genomic data and the advancements in phylogenetics now facilitate a robust and precise foundation for the higher-level classification within the kingdom. This study provides an updated classification of the kingdom Fungi, drawing upon a comprehensive phylogenomic analysis of Holomycota, with which we outline well-supported nodes of the fungal tree and explore more contentious groupings. We accept 19 phyla of Fungi, viz. Aphelidiomycota, Ascomycota, Basidiobolomycota, Basidiomycota, Blastocladiomycota, Calcarisporiellomycota, Chytridiomycota, Entomophthoromycota, Entorrhizomycota, Glomeromycota, Kickxellomycota, Monoblepharomycota, Mortierellomycota, Mucoromycota, Neocallimastigomycota, Olpidiomycota, Rozellomycota, Sanchytriomycota, and Zoopagomycota. In the phylogenies, Caulochytriomycota resides in Chytridiomycota; thus, the former is regarded as a synonym of the latter, while Caulochytriomycetes is viewed as a class in Chytridiomycota. We provide a description of each phylum followed by its classes. A new subphylum, Sanchytriomycotina Karpov is introduced as the only subphylum in Sanchytriomycota. The subclass Pneumocystomycetidae Kirk et al. in Pneumocystomycetes, Ascomycota is invalid and thus validated. Placements of fossil fungi in phyla and classes are also discussed, providing examples.

Identifying climate‐smart tropical Key Biodiversity Areas for protection in response to widespread temperature novelty

AbstractKey Biodiversity Areas (KBAs) are a cornerstone of 21st‐century area‐based conservation targets. In tropical KBAs, biodiversity is potentially at high risk from climate change, because most species reside within or beneath the canopy, where small increases in temperature can lead to novel climate regimes. We quantify novelty in temperature regimes by modeling hourly temperatures below the forest canopy across tropical KBAs between 1990 and 2019. We find that up to 66% of KBAs with tropical forests have recently transitioned to novel temperature regimes. Nevertheless, 34% of KBAs are providing refuge from novelty, 58% of which are not protected. By conducting the first pan‐tropical analyses of changes in below‐canopy temperature conditions in KBAs, we identify KBAs that are acting as climate refugia and should be considered for expansion of the conservation network in response to the post‐2020 Global Biodiversity Framework target to conserve 30% of land area by 2030.