Nuclear Magnetic Resonance Approach Research Articles

#2985 Gut microbiome-dependent systemic alterations in experimental chronic kidney disease

Abstract Background and Aims Patients diagnosed with Chronic Kidney Disease (CKD) undergo a notable decline in both quality of life and life expectancy, primarily attributable to the heightened prevalence of cardiovascular diseases (CVD). These conditions not only contribute to the initiation of CKD but are also a consequence of inflammation associated with CKD. Despite optimal kidney replacement therapies, irreversible alterations of the CV system may persist. The responsible mechanisms in CKD leading to CVD are incompletely understood. CKD is characterized by gut microbial dysbiosis, with a significant proportion of uremic toxins suspected to have microbial origin. We hypothesize that the gut microbiota promotes inflammation and CV risk in states of impaired kidney function. Method Experimental CKD was induced in 129sv mice by 5/6 nephrectomy. Prior to nephrectomy, mice were assigned to receive either glucose (Ctrl) or a non-absorptive antibiotic cocktail (comprising Ampicillin, Metronidazole, Neomycin, and Vancomycin, Abx) via the drinking water to deplete their microbiomes throughout the 13-week study period. Ctrl and Abx-treated Sham-operated mice served as controls. Plasma, feces, and urine specimens were systematically collected at diverse time intervals, facilitating the longitudinal exploration of metabolite dynamics and CKD progression through an untargeted Nuclear Magnetic Resonance (NMR) approach. Simultaneously, echocardiography assessments were conducted at identical time points to assess cardiac function. Results Abx-treated CKD mice displayed improved kidney function, demonstrated by significantly reduced levels of plasma Cystatin C (0.2913 ± 0.1850 mg/L) compared to Ctrl (0.9133 ± 0.6616 mg/L)(p = 0.0256). Hearts from Abx-treated CKD mice exhibited significantly less remodeling, independent of their blood pressure (radiotelemetry measurements). The ratio of left ventricular (LV) mass to tibia length was 4.858 ± 0.3453 in the Abx-treated group compared to Ctrl (8.198 ± 0.3542) (p < 0.0001). Sirius red stained hearts revealed significantly less fibrosis in Abx-treated CKD mice (5.784 ± 5.465%) compared to Ctrl (11.98 ± 3.741%) (p = 0.0218). The cardiac expression of several damage-associated genes (Npbb, Ctgf, and Ngal) portrayed the same trend. To elucidate the interplay between the microbiome and the immune system underlying these observed effects, we provide a comprehensive atlas of the immune landscape in different organs (blood, spleen, heart, intestine), along with a catalogue of gut-derived metabolites, shedding light on the systemic alterations induced by microbiome-dependent mechanisms in CKD. Conclusion Our findings suggest that microbiome-dependent mechanisms drive kidney function decline and cardiac remodeling in experimental CKD. These results underscore the interplay between microbial alterations, metabolite dynamics, immune response, and cardiovascular complications in the context of CKD.

Cation Distribution and Anion Transport in the La3Ga5-xGe1+xO14+0.5x Langasite Structure.

Exploration of compositional disorder using conventional diffraction-based techniques is challenging for systems containing isoelectronic ions possessing similar coherent neutron scattering lengths. Here, we show that a multinuclear solid-state Nuclear Magnetic Resonance (NMR) approach provides compelling insight into the Ga3+/Ge4+ cation distribution and oxygen anion transport in a family of solid electrolytes with langasite structure and La3Ga5-xGe1+xO14+0.5x composition. Ultrahigh field 71Ga Magic Angle Spinning (MAS) NMR experiments acquired at 35.2 T offer striking resolution enhancement, thereby enabling clear detection of Ga sites in different coordination environments. Three-connected GaO4, four-connected GaO4 and GaO6 polyhedra are probed for the parent La3Ga5GeO14 structure, while one additional spectral feature corresponding to the key (Ga,Ge)2O8 structural unit which forms to accommodate the interstitial oxide ions is detected for the Ge4+-doped La3Ga3.5Ge2.5O14.75 phase. The complex spectral line shapes observed in the MAS NMR spectra are reproduced very accurately by the NMR parameters computed for a symmetry-adapted configurational ensemble that comprehensively models site disorder. This approach further reveals a Ga3+/Ge4+ distribution across all Ga/Ge sites that is controlled by a kinetically governed cation diffusion process. Variable temperature 17O MAS NMR experiments up to 700 °C importantly indicate that the presence of interstitial oxide ions triggers chemical exchange between all oxygen sites, thereby enabling atomic-scale understanding of the anion diffusion mechanism underpinning the transport properties of these materials.

Pore-scale physics of ice melting within unconsolidated porous media revealed by non-destructive magnetic resonance characterization

Melting of ice in porous media widely exists in energy and environment applications as well as extraterrestrial water resource utilization. In order to characterize the ice-water phase transition within complicated opaque porous media, we employ the nuclear magnetic resonance (NMR) and imaging (MRI) approaches. Transient distributions of transverse relaxation time T2 from NMR enable us to reveal the substantial role of inherent throat and pore confinements in ice melting among porous media. More importantly, the increase in minimum T2 provides new findings on how the confinement between ice crystal and particle surface evolves inside the pore. For porous media with negligible gravity effect, both the changes in NMR-determined melting rate and our theoretical analysis of melting front confirm that conduction is the dominant heat transfer mode. The evolution of mushy melting front and 3D spatial distribution of water content are directly visualized by a stack of temporal cross-section images from MRI, in consistency with the corresponding NMR results. For heterogeneous porous media like lunar regolith simulant, the T2 distribution shows two distinct pore size distributions with different pore-scale melting dynamics, and its maximum T2 keeps increasing till the end of melting process instead of reaching steady in homogeneous porous media.

From Milliseconds to Minutes: Melittin Self-Assembly from Concerted Non-Equilibrium Pressure-Jump and Equilibrium Relaxation Nuclear Magnetic Resonance.

Non-equilibrium kinetics techniques like pressure-jump nuclear magnetic resonance (NMR) are powerful in tracking changes in oligomeric populations and are not limited by relaxation rates for the time scales of exchange that can be probed. However, these techniques are less sensitive to minor, transient populations than are Carr-Purcell-Meiboom-Gill (CPMG) relaxation dispersion experiments. We integrated non-equilibrium pressure-jump and equilibrium CPMG relaxation dispersion data to fully map the kinetic landscape of melittin tetramerization. While monomeric peptides weakly form dimers (Kd,D/M ≈ 26 mM) whose population never exceeds 1.6% at 288 K, dimers associate tightly to form stable tetrameric species (Kd,T/D ≈ 740 nM). Exchange between the monomer and dimer, along with exchange between the dimer and tetramer, occurs on the millisecond time scale. The NMR approach developed herein can be readily applied to studying the folding and misfolding of a wide range of oligomeric assemblies.

HPLC and LC-MS/MS-Based Quantitative Characterization of Related Substances Associated with Sotalol Hydrochloride.

In total, three related substances (RS) associated with sotalol hydrochloride (STHCl) were herein identified with a novel gradient high-performance liquid chromatography (HPLC) protocol. Further characterization of these substances was then performed via liquid chromatography-mass spectroscopy (LC-MS/MS) and nuclear magnetic resonance (NMR) approaches. For these analyses, commercial STHCl samples were used for quantitative HPLC studies and the degradation of STHCl under acidic (1M HCl), alkaline (1M NaOH), oxidative (30% H2O2), photolytic (4500 Lx), and thermal stress conditions (100 °C) was assessed. This approach revealed this drug to be resistant to acidic, alkaline, and high-temperature conditions, whereas it was susceptible to light and oxidation as confirmed through long-term experiments. The putative mechanisms governing RS formation were also explored, revealing that RS3 was derived from the manufacturing process, whereas RS2 was generated via oxidation and RS1 was generated in response to light exposure. The cytotoxicity of these RS compounds was then assessed using MTT assays and acute toxicity test. Overall, this study provides details regarding the characterization, isolation, quantification, and toxicological evaluation of STHCl and associated RS compounds together with details regarding the precise, specific, and reliable novel HPLC technique, thus providing the requisite information necessary to ensure STHCl purity and safety.

Carrier density and delocalization signatures in doped carbon nanotubes from quantitative magnetic resonance.

High-performance semiconductor materials and devices are needed to supply the growing energy and computing demand. Organic semiconductors (OSCs) are attractive options for opto-electronic devices, due to their low cost, extensive tunability, easy fabrication, and flexibility. Semiconducting single-walled carbon nanotubes (s-SWCNTs) have been extensively studied due to their high carrier mobility, stability and opto-electronic tunability. Although molecular charge transfer doping affords widely tunable carrier density and conductivity in s-SWCNTs (and OSCs in general), a pervasive challenge for such systems is reliable measurement of charge carrier density and mobility. In this work we demonstrate a direct quantification of charge carrier density, and by extension carrier mobility, in chemically doped s-SWCNTs by a nuclear magnetic resonance approach. The experimental results are verified by a phase-space filling doping model, and we suggest this approach should be broadly applicable for OSCs. Our results show that hole mobility in doped s-SWCNT networks increases with increasing charge carrier density, a finding that is contrary to that expected for mobility limited by ionized impurity scattering. We discuss the implications of this important finding for additional tunability and applicability of s-SWCNT and OSC devices.

Development of a NMR Device Adapted to Operando Analysis of Electrochemical Commercial Cells

NMR (Nuclear Magnetic Resonance) spectroscopy is a common analytical technique for analysing electrode materials. Most of these analyses are ex situ NMR measurements, a post mortem analysis of the cell. Yet, development of in situ and operando NMR considerably increased. Since the first in situ measurement reported by Gerald et al [1] in 2000, a large variety of operando NMR approaches have been developed and applied to batteries [2–5].Two levers of improvement remain for operando NMR: the battery-casing design, usually home-made, and the geometry of the NMR resonator used to detect the spectrum.Battery-casing goes from flexible cells in a clear pouch to capsule, Swagelok or coin cells. Home-made casings are usually used to avoid distortion and sensitivity loss in the NMR measurement, attributed to the conductive casings. Another way of improvement is the type of NMR resonator to fit a larger variety of cell geometries. Solenoids, saddle coil, hairpin coil or parallel plates are currently used.Electrochemistry is sensitive to cell fabrication, so home-made cells are intrinsically less reproducible than commercial cells. To increase the repeatability for a higher number of cycles and from one cell to another, we collaborate with a cell maker to get industrial pouch cells and we use commercial protocols. Nevertheless, studying such cells implies new challenges. First, strong and controlled pressure must be applied on the cell. An innovative pressure system was created to be compatible with the NMR requirements, mainly low available space and the absence of magnetic or strongly paramagnetic materials. It also involved adapting the resonator to the commercial cell geometry. The second challenge is the attenuation and distortion of the NMR signal by conductors (skin effect for radio-frequency fields).Recently, Walder [6]. arose our interest with their report on operando NMR measurement for a stainless steel coin cell. We will present measurements that quantify the influence of the components of a commercial battery (casing material, electrodes, current collector and number of stacks).This development and these measurements will lead in close future to performing operando NMR of commercial cells in fast charging conditions (for example on silicon Li-ion batteries).[1] R. E. Gerald et al., J. Power Sources 89, 237 (2000).[2] X. Liu et al., Adv Mater 33, 2005878 (2021).[3] O. Pecher et al., Chem. Mater. 29, 213 (2017).[4] K. Gotoh et al., J. Mater. Chem. A 8, 14472 (2020).[5] K. J. Sanders et al., Carbon 189, 377 (2022).[6] B. J. Walder et al., Sci. Adv. 7, eabg8298 (2021).

Novel Operando Nuclear Magnetic Resonance Approach for Tracking the Electrode State of Charge in Li/Na-Ion Batteries

Lithium and sodium-ion batteries have become the focal point of interest for the energy transition due to their promising applications for electric cars and energy grid storage. Operando characterization of batteries is critical to understand the degradation processes and increasing their electrochemical performance, especially in abusive conditions like during fast charges. Knowledge of the redox state of each electrode is essential to identify the origins of capacity loss in full batteries. Among the methods used for these investigations, operando Nuclear Magnetic Resonance (NMR) methods are promising since, without destroying the battery, they enable monitoring in real-time the electrochemical processes and the formation of short-lived metastable or reactive phases [1,2].Up to now, most operando NMR studies have focused on 7Li NMR spectroscopy to follow the lithiation and degradation processes in the solid electrodes of lithium-ion batteries. However, the large shifts and broadenings of the NMR spectra, which result from the redox-active paramagnetic ions (Ni2/3+, Co4+, Mn3/4+) or from the metallicity of the electrodes [3], complicate operando NMR spectra acquisition and interpretation for full batteries.Herein, we demonstrate that the 1H operando NMR signal of the liquid electrolyte solvent can be used to spy on the positive electrode evolution while benefitting from the high sensitivity of 1H liquid-state NMR compared to 7Li NMR. So far, operando NMR using the liquid electrolyte signal was mainly exploited to follow electrolyte decomposition [4] or to image indirectly dendrite formation [5]. Contrary to the lithium or sodium atoms composing the electrodes, hydrogen atoms in the electrolyte solvent are not a direct probe of the state of charge of the electrode. We demonstrate that the 1H NMR signal of the electrolyte molecules in the battery is, however, highly sensitive to the magnetic susceptibility (and therefore the redox state) of the neighboring particles of positive electrode active material.The state-of-charge (SOC) of the positive electrodes in the charging battery can be tracked indirectly through distortion in the spectrum of the dimethyl carbonate (DMC) solvent near the positive electrode. The effect of the other battery components such as current collectors, separators, or even negative electrodes is shown to be negligible compared to the perturbations induced by the positive electrode. We define specific descriptors to track the changes in the distorted 1H NMR spectrum of the battery and we correlate these changes with the state-of-charge of the positive electrode inside the battery as it is charged and discharged. This approach will enable measuring, operando, the redox state of positive electrodes in batteries, even when their 7Li signals cannot be detected by NMR. Exact knowledge of the redox state will contribute to a better exploitation of the electrochemical curves in full batteries.[1] Bagheri, K.; Deschamps, M.; Salager, E. Nuclear Magnetic Resonance for Interfaces in Rechargeable Batteries. Current Opinion in Colloid & Interface Science 2023, 64, 101675. https://doi.org/10.1016/j.cocis.2022.101675.[2] Liu, X.; Liang, Z.; Xiang, Y.; Lin, M.; Li, Q.; Liu, Z.; Zhong, G.; Fu, R.; Yang, Y. Solid‐State NMR and MRI Spectroscopy for Li/Na Batteries: Materials, Interface, and in Situ Characterization. Advanced Materials 2021, 33 (50), 2005878. https://doi.org/10.1002/adma.202005878.[3] Grey, C. P.; Dupré, N. NMR Studies of Cathode Materials for Lithium-Ion Rechargeable Batteries. Chemical Reviews 2004, 104 (10), 4493–4512. https://doi.org/10.1021/cr020734p.[4] Wiemers-Meyer, S.; Winter, M.; Nowak, S. NMR as a Powerful Tool to Study Lithium Ion Battery Electrolytes. Annual Reports on NMR Spectroscopy 2019, 121–162. https://doi.org/10.1016/bs.arnmr.2018.12.003.[5] Ilott, A. J.; Mohammadi, M.; Chang, H. J.; Grey, C. P.; Jerschow, A. Real-Time 3D Imaging of Microstructure Growth in Battery Cells Using Indirect MRI. Proceedings of the National Academy of Sciences 2016, 113 (39), 10779–10784. https://doi.org/10.1073/pnas.1607903113.

A reliable external calibration method for reaction monitoring with benchtop NMR.

Nuclear magnetic resonance (NMR) spectroscopy is a powerful analytical technique with the ability to acquire both quantitative and structurally insightful data for multiple components in a test sample. This makes NMR spectroscopy a desirable tool to understand, monitor, and optimize chemical transformations. While quantitative NMR (qNMR) approaches relying on internal standards are well-established, using an absolute external calibration scheme is beneficial for reaction monitoring as resonance overlap complications from an added reference material to the sample can be avoided. Particularly, this type of qNMR technique is of interest with benchtop NMR spectrometers as the likelihood of resonance overlap is only enhanced with the lower magnetic field strengths of the used permanent magnets. The included study describes a simple yet robust methodology to determine concentration conversion factors for NMR systems using single- and multi-analyte linear regression models. This approach is leveraged to investigate a pharmaceutically relevant amide coupling batch reaction. An on-line stopped-flow (i.e., interrupted-flow or paused-flow) benchtop NMR system was used to monitor both the 1,1'-carbonyldiimidazole (CDI) promoted acid activation and the amide coupling. The results highlight how quantitative measurements in benchtop NMR systems can provide valuable information and enable analysts to make decisions in real time.

Spatial evolution of pore and fracture structures in coal under unloading confining pressure: A stratified nuclear magnetic resonance approach

The inherent spatial complexity and strong heterogeneity characterise the pore and fracture structures (PFS) in coal. Understanding the spatial evolution of PFS in coal under unloading confining pressure is crucial for ensuring the safety of coal mining operations. In this study, the stratified nuclear magnetic resonance (NMR) technique and a triaxial mechanical loading system were combined to realise real-time observation of the spatial evolution of PFS in coal during the unloading confining pressure process. A conceptual model depicting the spatial evolution of PFS in coal under unloading confining pressure was formulated. Based on our experimental findings, the mesoscopic mechanical behaviour of coal subjected to unloading confining pressure was simulated using PFC 2D. Our research reveals that throughout the unloading confining pressure process, the PFS within coal samples simultaneously exhibits characteristics of both compacted and fractured states, with mutual transformation occurring in the adsorption and seepage pores. A reduction in confining pressure results in a notable escalation of observed damage within the coal samples and intensified development of PFS. Furthermore, our numerical simulation results closely align with NMR test results, providing additional validation to our findings.

Comprehensive NMR Investigation of Imidazolium-Based Ionic Liquids [BMIM][OSU] and [BMIM][Cl] Impact on Binding and Dynamics of the Anticancer Drug Doxorubicin Hydrochloride.

For the design of an efficient drug delivery system utilizing an ionic liquid (IL) as a carrier, it is prudent to gain molecular/atomistic level insights of a drug with IL in terms of binding and dynamics. In this scenario, the influence of anionic counterpart of imidazolium-based ILs, namely, 1-butyl-3-methyl-imidazolium octyl sulfate [BMIM][OSU] and 1-butyl-3-methyl-imidazolium chloride [BMIM][Cl] in their submicellar region ([IL] = 20 mM) on the model water-soluble anticancer drug doxorubicin hydrochloride (DOX) was probed by employing an arsenal of nuclear magnetic resonance (NMR) approaches. The salient feature of the present study includes the significant interaction of DOX with [BMIM][OSU], whereas the lack of such an interaction with [BMIM][Cl] is gauged by 1H NMR translation self-diffusometry and is further corroborated by 13C chemical shift perturbation. The two-step model was utilized to estimate the bound fraction (pb) and equivalent partition coefficient (K) of DOX with [BMIM][OSU]. A combination of selective and nonselective spin-lattice relaxation rates (R1SEL and R1NS, respectively) enables to gauze the significant interaction of DOX with [BMIM][OSU] over [BMIM][Cl]. Furthermore, 1D transient and truncated driven nuclear Overhauser enhancement (NOE) data analyses in the initial rate limit permits the evaluation of the cross-relaxation efficacy of DOX with the investigated ILs. An Arrhenius-type temperature dependence of the drug's self-diffusion was observed for DOX, DOX-[BMIM][OSU], and DOX-[BMIM][Cl] aqueous mixtures and the corresponding activation energies were evaluated.

Magnetic Resonance-Based Analytical Tools to Study Polyvinylpyrrolidone-Hydroxyapatite Composites.

The synthesis of biocompatible and bioresorbable composite materials, such as a "polymer matrix-mineral constituent," stimulating the natural growth of living tissues and the restoration of damaged parts of the body, is one of the challenging problems in regenerative medicine and materials science. Composite films of bioresorbable polymer of polyvinylpyrrolidone (PVP) and hydroxyapatite (HA) were obtained. HA was synthesized in situ in the polymer solution. We applied electron paramagnetic resonance (EPR) and nuclear magnetic resonance (NMR) approaches to study the composite films' properties. The application of EPR in two frequency ranges allowed us to derive spectroscopic parameters of the nitrogen-based light and radiation-induced paramagnetic centers in HA, PVP and PVP-HA with high accuracy. It was shown that PVP did not significantly affect the EPR spectral and relaxation parameters of the radiation-induced paramagnetic centers in HA, while light-induced centers were detected only in PVP. Magic angle spinning (MAS) 1H NMR showed the presence of two signals at 4.7 ppm and -2.15 ppm, attributed to "free" water and hydroxyl groups, while the single line was attributed to 31P. NMR relaxation measurements for 1H and 31P showed that the relaxation decays were multicomponent processes that can be described by three components of the transverse relaxation times. The obtained results demonstrated that the applied magnetic resonance methods can be used for the quality control of PVP-HA composites and, potentially, for the development of analytical tools to follow the processes of sample treatment, resorption, and degradation.

The effect of tube quality on externally calibrated quantitative nuclear magnetic resonance analysis: How bad can it be?

Externally calibrated quantitative nuclear magnetic resonance (NMR) approaches offer practical means to simultaneously evaluate chemical identity and content without the addition of calibrants to the test sample. Despite continuous advances in external calibration over the last few decades, adoption of these approaches has been slower than expected. Variations in NMR tube geometry are a commonly overlooked factor that can have a substantial effect on externally calibrated quantitation methods. In this report, we investigate the extent to which tube-to-tube volume variability can affect quantitative NMR outcomes. The results highlight the importance of considering tube quality during the development stages of externally calibrated quantitative methods. In addition, we propose a simple, yet effective volume correction strategy using the residual protonated solvent signal that, based on experiments with mixed NMR tubes of varying quality, alleviates the effect of tube-to-tube variability.

Challenges and opportunities in elucidating the structures of biofilm exopolysaccharides: A case study of the Pseudomonas aeruginosa exopolysaccharide called Pel.

Biofilm formation protects bacteria from antibiotic treatment and host immune responses, making biofilm infections difficult to treat. Within biofilms, bacterial cells are entangled in a self-produced extracellular matrix that typically includes exopolysaccharides. Molecular-level descriptions of biofilm matrix components, especially exopolysaccharides, have been challenging to attain due to their complex nature and lack of solubility and crystallinity. Solid-state nuclear magnetic resonance (NMR) has emerged as a key tool to determine the structure of biofilm matrix exopolysaccharides without degradative sample preparation. In this review, we discuss challenges of studying biofilm matrix exopolysaccharides and opportunities to develop solid-state NMR approaches to study these generally intractable materials. We specifically highlight investigations of the exopolysaccharide called Pel made by the opportunistic pathogen, Pseudomonas aeruginosa. We provide a roadmap for determining exopolysaccharide structure and discuss future opportunities to study such systems using solid-state NMR. The strategies discussed for elucidating biofilm exopolysaccharide structure should be broadly applicable to studying the structures of other glycans.

Opportunities and Challenges in Applying Solid-State NMR Spectroscopy in Organic Mechanochemistry.

In recent years it is shown that mechanochemical strategies can be beneficial in directed conversions of organic compounds. Finding new reactions proved difficult, and due to the lack of mechanistic understanding of mechanochemical reaction events, respective efforts have mostly remained empirical. Spectroscopic techniques are crucial in shedding light on these questions. In this overview, the opportunities and challenges of solid-state nuclear magnetic resonance (NMR) spectroscopy in the field of organic mechanochemistry are discussed. After a brief discussion of the basics of high-resolution solid-state NMR under magic-angle spinning (MAS) conditions, seven opportunities for solid-state NMR in the field of organic mechanochemistry are presented, ranging from ex situ approaches to structurally elucidated reaction products obtained by milling to the potential and limitations of in situ solid-state NMR approaches. Particular strengths of solid-state NMR, for instance in differentiating polymorphs, in NMR-crystallographic structure-determination protocols, or in detecting weak noncovalent interactions in molecular-recognition events employing proton-detected solid-state NMR experiments at fast MAS frequencies, are discussed.

A label-free approach for measuring interactions of proteins with lipid membranes

In this issue of Cell Reports Methods, Sadi etal. present a nuclear magnetic resonance approach for quantitative assessment of protein interactions with lipid membranes. It is sensitive, applicable to diverse membrane systems, covers a broad range of KDs, and does not require large amounts of material.

Staphylococcus aureus sacculus mediates activities of M23 hydrolases

Peptidoglycan, a gigadalton polymer, functions as the scaffold for bacterial cell walls and provides cell integrity. Peptidoglycan is remodelled by a large and diverse group of peptidoglycan hydrolases, which control bacterial cell growth and division. Over the years, many studies have focused on these enzymes, but knowledge on their action within peptidoglycan mesh from a molecular basis is scarce. Here, we provide structural insights into the interaction between short peptidoglycan fragments and the entire sacculus with two evolutionarily related peptidases of the M23 family, lysostaphin and LytM. Through nuclear magnetic resonance, mass spectrometry, information-driven modelling, site-directed mutagenesis and biochemical approaches, we propose a model in which peptidoglycan cross-linking affects the activity, selectivity and specificity of these two structurally related enzymes differently.

Unraveling the promoter effect and the roles of counterion exchange in glycosylation reaction.

The stereoselectivity of glycosidic bond formation continues to pose a noteworthy hurdle in synthesizing carbohydrates, primarily due to the simultaneous occurrence of SN1 and SN2 processes during the glycosylation reaction. Here, we applied an in-depth analysis of the glycosylation mechanism by using low-temperature nuclear magnetic resonance and statistical approaches. A pathway driven by counterion exchanges and reaction byproducts was first discovered to outline the stereocontributions of intermediates. Moreover, the relative reactivity values, acceptor nucleophilic constants, and Hammett substituent constants (σ values) provided a general index to indicate the mechanistic pathways. These results could allow building block tailoring and reaction condition optimization in carbohydrate synthesis to be greatly facilitated and simplified.

Disorder and Oxide Ion Diffusion Mechanism in La1.54Sr0.46Ga3O7.27 Melilite from Nuclear Magnetic Resonance.

Layered tetrahedral network melilite is a promising structural family of fast ion conductors that exhibits the flexibility required to accommodate interstitial oxide anions, leading to excellent ionic transport properties at moderate temperatures. Here, we present a combined experimental and computational magic angle spinning (MAS) nuclear magnetic resonance (NMR) approach which aims at elucidating the local configurational disorder and oxide ion diffusion mechanism in a key member of this structural family possessing the La1.54Sr0.46Ga3O7.27 composition. 17O and 71Ga MAS NMR spectra display complex spectral line shapes that could be accurately predicted using a computational ensemble-based approach to model site disorder across multiple cationic and anionic sites, thereby enabling the assignment of bridging/nonbridging oxygens and the identification of distinct gallium coordination environments. The 17O and 71Ga MAS NMR spectra of La1.54Sr0.46Ga3O7.27 display additional features not observed for the parent LaSrGa3O7 phase which are attributed to interstitial oxide ions incorporated upon cation doping and stabilized by the formation of five-coordinate Ga centers conferring framework flexibility. 17O high-temperature (HT) MAS NMR experiments capture exchange within the bridging oxygens at 130 °C and reveal coalescence of all oxygen signals in La1.54Sr0.46Ga3O7.27 at approximately 300 °C, indicative of the participation of both interstitial and framework oxide ions in the transport process. These results further supported by the coalescence of the 71Ga resonances in the 71Ga HT MAS NMR spectra of La1.54Sr0.46Ga3O7.27 unequivocally provide evidence of the conduction mechanism in this melilite phase and highlight the potential of MAS NMR spectroscopy to enhance the understanding of ionic motion in solid electrolytes.

The differentiation of N-butyl pentylone isomers using GC-EI-MS and NMR

Forensic laboratories are faced with an ever-expanding seized drug landscape including the increasing prevalence of novel psychoactive substances (NPS), such as synthetic cathinones, that have varying potencies and scheduling. This study demonstrates a combined gas chromatography-electron ionization-mass spectrometry (GC-EI-MS) and nuclear magnetic resonance (NMR) spectroscopy approach for the differentiation of N-butyl pentylone isomers based on distinct retention times, characteristic EI mass spectra, and NMR characterization. Retention time reproducibility was assessed from 60 replicate measurements for each isomer over the course of a month. In addition, the effect of the mass spectrometer tune and the stability of an identified characteristic ion ratio using spectral data from ± 1 scan on either side of the peak apex were also statistically assessed using Welch’s ANOVA testing.The presence of diastereomers for N-sec-butyl pentylone was identified using the developed GC-EI-MS method, which was confirmed using one-dimensional and two-dimensional NMR spectroscopy. The retention time reproducibility of the chromatographic method was ± 0.076% or less over the course of a month. An identified characteristic ion ratio between the abundance of the fragment ion at m/z 128 and the fragment ion at m/z 72 enabled the differentiation of the four N-butyl pentylone isomers, even when accounting for the effect of the mass spectrometer tune and mass spectral scans used to calculate the characteristic ion ratio. The 95% confidence interval mean abundance ratio of the fragment ions at m/z 128 and m/z 72 was 17.14 ± 0.14 for N-butyl pentylone, 6.44 ± 0.05 for N-isobutyl pentylone, 3.38 ± 0.02 for N-sec-butyl pentylone, and 0.75 ± 0.01 for N-tert-butyl pentylone. These results highlight the capabilities of a combined GC-EI-MS and NMR approach for the differentiation and characterization of synthetic cathinone isomers.