Nuclear Density Functional Theory Research Articles

The Role of Attractive Non-Covalent Interactions in Peptide Macrocyclization.

The efficiency of macrocyclization reactions relies on the appropriate conformational preorganization of a linear precursor, ensuring that reactive ends are in spatial proximity prior to ring closure. Traditional peptide cyclization approaches that reduce the extent of terminal ion pairing often disfavor cyclization-conducive conformations and can lead to undesired cyclodimerization or oligomerization side reactions, particularly when they are performed without high dilution. To address this challenge, synthetic strategies that leverage attractive noncovalent interactions, such as zwitterionic attraction between chain termini during macrocyclization, offer a potential solution by reducing the entropic penalty associated with linear peptides adopting precyclization conformations. In this study, we investigate the role of (N-isocyanoimino)triphenylphosphorane (Pinc) in facilitating the cyclization of linear peptides into conformationally rigid macrocycles. The observed moderate diastereoselectivity is consistent with the preferential Si-facial addition of Pinc, where the isocyanide adds to the E-iminium ion on the same face as the l-proline amide group. The resulting peptide chain reveals that the activated phosphonium ylide of Pinc brings the reactive ends close together, promoting cyclization by enclosing the carboxylate within the interior of the pentapeptide and preventing the formation of byproducts. For shorter peptides with modified peptide backbones, the cyclization mechanism and outcome are redirected, as nucleophilic motifs such as thiazole and imidazole can covalently trap nitrilium intermediates. The isolation of the intermediate in the unproductive macrocyclization pathway, along with nuclear magnetic resonance and density functional theory studies, provides insights into heterocycle-dependent selectivity. The Pinc-driven macrocyclization process has generated diverse collections of cyclic molecules, and our models offer a comprehensive understanding of observed trends, facilitating the development of other heterocycle-forming macrocyclization reactions.

The Synergy between Nuclear Magnetic Resonance and Density Functional Theory Calculations.

This paper deals with the synergy between Nuclear Magnetic Resonance (NMR) spectroscopic investigations and DFT calculations, mainly of NMR parameters. Both the liquid and the solid states are discussed here. This text is a mix of published results supplemented with new findings. This paper deals with examples in which useful results could not have been obtained without combining NMR measurements and DFT calculations. Examples of such cases are tautomeric systems in which NMR data are calculated for the tautomers; hydrogen-bonded systems in which better XH bond lengths can be determined; cage compounds for which assignment cannot be made based on NMR data alone; revison of already published structures; ionic compounds for which reference data are not available; assignment of solid-state spectra and crystal forms; and the creation of libraries for biological molecules. In addition to these literature cases, a revision of a cage structure and substituent effects on pyrroles is also discussed.

Observation of Haldane magnetism in organically templated vanadium phosphate (enH2)0.5VPO4OH.

We prepared an organically templated magnet, (enH2)0.5VPO4OH (enH2 = diprotonated ethylenediamine), hydrothermally and characterized its crystal structure by powder X-ray diffraction and Fourier-transform infrared spectroscopy, and its physical properties by magnetization, specific heat and nuclear magnetic resonance measurements and density functional theory calculations. (enH2)0.5VPO4OH consists of uniform chains of V3+ (d2, S = 1) ions and exhibits Haldane magnetism with spin gap Δ = 59.3 K from the magnetic susceptibility χ(T) at μ0H = 0.1 T, which is reduced to 48.4 K at μ0H = 9 T according to the 31P shift. The NMR data evidence the formation of a spin-glass state of unpaired S = 1/2 spins at TS-G ≈ 3 K and indicate that the Haldane S = 1 spin chain segments are much longer in the organically templated magnet (enH2)0.5VPO4OH than in the ammonium counterpart NH4VPO4OH. The single-ion anisotropy D and the interchain exchange J' in (enH2)0.5VPO4OH and NH4VPO4OH were estimated in density functional calculations to find them very weak compared to the intrachain exchange J.

An NMR crystallographic characterisation of solid (+)-usnic acid.

We use a combination of one- and two-dimensional solid-state nuclear magnetic resonance (NMR) spectroscopy and density functional theory (DFT) calculations to obtain a full assignment of the 1H and 13C signals for solid (+)-usnic acid, which contains two molecules in the asymmetric unit. By combining through-space 1H-1H correlation data with computation it is possible to assign signals not just to the same molecules (relative assignment) but to assign the signals to specific crystallographic molecules (absolute assignment). Variable-temperature measurements reveal that there is some variation in many of the 13C chemical shifts with temperature, likely arising from varying populations of different tautomeric forms of the molecule. The NMR spectrum of crystalline (+)-usnic acid is then compared with that of ground Usnea dasopoga lichen (the source material of the usnic acid). The abundance of usnic acid is so great in the lichen that this natural product can be observed directly in the NMR spectrum without further purification. This natural sample of usnic acid appears to have the same crystalline form as that in the pure commercial sample.

Direct Electroreduction of Carbonate to Formate

A cause of losses in energy and carbon conversion efficiencies during the electrochemical CO2 reduction reaction (eCO2RR) can be attributed to the formation of carbonates (CO3 2–), which is generally considered to be an electrochemically-inert species. Herein, we employ in-situ electrochemical Raman spectroscopy, liquid chromatography, nuclear magnetic resonance spectroscopy, 13C isotope-labelling and density functional theory (DFT) simulations to understand the role of carbonate species formed on copper catalysts during eCO2RR, and its ability to reduce to formate. Direct carbonate-to-formate conversion was confirmed by the the direct reduction of CuCO3, and by pulse reduction of N2-saturated K2CO3 electrolyte on Cu,. DFT simulations elucidated the nature of the active sites generating the Cu-CO3 2– species and revealed the mechanism for the pulse-enabled carbonate reduction to formate. Combining both experimental and computational results, we proposed that a dynamic carbonate intermediate was constantly formed on Cu during eCO2RR, that further evolves to formate between –0.4 to –1.2 VRHE on Cu. Control systems using Pb, Ag and Au electrodes were also studied.

Electrolyte Mixtures and Organic Cathode Materials for Rechargeable Aluminum Batteries

Rechargeable aluminum (Al) metal batteries are an emerging energy storage technology ideal for use at a global scale: Al metal is energy dense, low cost, inherently safe, earth abundant, and highly recyclable. Despite such great promise, their technological progress has been hindered by the few electrolytes able to reversibly electrodeposit Al metal at room temperature, coupled with the limited number of positive electrode materials that are compatible with them. In this context, recent progress will be discussed in the development of electrolyte mixtures and organic cathode materials for rechargeable aluminum batteries. Chloroaluminate ionic liquid electrolytes and ionic liquid analogues prepared using mixtures of organic cations and/or neutral solvent species will be presented, which exhibit improved electrochemical properties for aluminum electrodeposition and in aluminum-graphite batteries, over temperatures ranging from ambient conditions down to -60 °C. Different organic structures will also be presented as organic cathode materials for aluminum batteries, where the effects of molecular structure on bulk energy storage properties will be discussed. Molecular-scale understanding of their ionic and electronic charge storage mechanisms will be elucidated through a combination of solid-state nuclear magnetic resonance (NMR) spectroscopy and density functional theory (DFT) calculations. Lastly, by using different electrolytes in combination with an organic cathode, it will be shown that electrolyte speciation can affect the local environments of charge-compensating ions in cycled organic electrodes. Overall, the results and analyses are aimed at developing next-generation rechargeable aluminum metal batteries for diverse energy storage applications.

Insight into the Chemical Stability of N-Heterocyclic Ammonium Groups for Anion-Exchange Polyelectrolytes

The chemical stability of cationic groups, not only related to alkaline degradation but also to electrochemical degradation at high potentials, is the key factor that limits the durability of anion exchange membranes (AEMs) and anion exchange ionomers (AEIs) [1]. In recent years, quaternary ammonium (QA) groups represented by N-heterocyclic ammonium (NHA) groups display excellent ionic conductivity and superior alkaline stability, which makes NHA groups promising candidates to be applied in AEMs and AEIs [2]. However, electrochemical degradation of NHA groups has been neglected in previous research, even though the electrochemical oxidation of phenyl QAs was found in the ionomer at the oxygen evolution potentials [3]. In short, the mechanism by which effect of substituents affects the durability of NHAs cations, including alkaline stability and electrochemical stability, is unclear yet, and NHA groups must be attached to the polymer backbones by substituents to achieve their applications.In this work, the chemical stability of NHA is comprehensively studied. To investigate the relationship between alkaline durability and structure, we report a systematic study on the alkaline stability of 24 representative NHA groups at different hydration numbers (λ). The electronic effect of substituents on NHA groups and degradation mechanisms of NHA groups are systematically investigated by 1H nuclear magnetic resonance (1H NMR) and density functional theory (DFT) calculations, showing that the NHA groups with electron-donating substituents exhibit outstanding alkaline stability and linking NHA groups with the polymer backbone via γ-position could be a rational design for highly alkaline stable AEMs and AEIs. Furthermore, a constant voltage is applied to the QAs electrolyte solution to measure the electrochemical stability by simulating the real operating environment of and AEM water electrolyzers. Compared to structural changes before and after voltage application, NHA exhibits worse stability than alkyl QAs, involving the radical degradation and electrochemical degradation. These results above give us a clearer picture while designing the polymer used for electrochemical devices, which is that a careful balance needs to be established between alkaline and electrochemical durability, especially under the high potential and harsh alkaline environment.

Predicting 51V nuclear magnetic resonance observables in molecular crystals.

Solid-state nuclear magnetic resonance (NMR) spectroscopy and quantum chemical density functional theory (DFT) calculations are widely used to characterize vanadium centers in biological and pharmaceutically relevant compounds. Several techniques have been recently developed to improve the accuracy of predicted NMR parameters obtained from DFT. Fragment-based and planewave-corrected methods employing hybrid density functionals are particularly effective tools for solid-state applications. A recent benchmark study involving molecular crystal compounds found that fragment-based NMR calculations using hybrid density functionals improve the accuracy of predicted 51V chemical shieldings by 20% relative to traditional planewave methods. This work extends the previous study, including a careful analysis of 51V chemical shift anisotropy, electric field gradient calculations, and a more extensive test set. The accuracy of planewave-corrected techniques and recently developed fragment-based methods using electrostatic embedding based on the polarized continuum model (PCM) are found to be highly competitive with previous methods. Planewave-corrected methods achieve a 34% improvement in the errors of predicted 51V chemical shieldings relative to planewave. Additionally, planewave-corrected and fragment-based calculations were performed using PCM embedding, improving the accuracy of predicted 51V chemical shielding (CS) tensor principal values by 30% and values by 15% relative to traditional planewave methods. The performance of these methods is further examined using a redox-active oxovandium complex and a common 51V NMR reference compound.

Small Cyclic Diglycolamides: Tautomerism, Solvent Extraction and Coordination with f-Elements: One Strain to Rule Them All.

The search for new effective extractants is an important task for the management of high-level liquid waste (HLW) generated during the reprocessing of spent nuclear fuel. Here, we synthesized a series of diglycolamides with cyclic substituents for the first time. We disclosed their coordination with f-element nitrates [La(NO3)3 and UO2(NO3)2] by SC-XRD study and complexation properties toward Am(III), Ln(III), and U(VI) during solvent extraction from nitric acid solutions. Using dynamic nuclear magnetic resonance (NMR) and density functional theory (DFT) calculations, the importance of tautomerism in the extraction properties of diglycolamides was shown.

Charge-clustering induced fast ion conduction in 2LiX-GaF3: A strategy for electrolyte design.

2LiX-GaF3 (X = Cl, Br, I) electrolytes offer favorable features for solid-state batteries: mechanical pliability and high conductivities. However, understanding the origin of fast ion transport in 2LiX-GaF3 has been challenging. The ionic conductivity order of 2LiCl-GaF3 (3.20 mS/cm) > 2LiBr-GaF3 (0.84 mS/cm) > 2LiI-GaF3 (0.03 mS/cm) contradicts binary LiCl (10-12 S/cm) < LiBr (10-10 S/cm) < LiI (10-7 S/cm). Using multinuclear 7Li, 71Ga, 19F solid-state nuclear magnetic resonance and density functional theory simulations, we found that Ga(F,X)n polyanions boost Li+-ion transport by weakening Li+-X- interactions via charge clustering. In 2LiBr-GaF3 and 2LiI-GaF3, Ga-X coordination is reduced with decreased F participation, compared to 2LiCl-GaF3. These insights will inform electrolyte design based on charge clustering, applicable to various ion conductors. This strategy could prove effective for producing highly conductive multivalent cation conductors such as Ca2+ and Mg2+, as charge clustering of carboxylates in proteins is found to decrease their binding to Ca2+ and Mg2+.

Synergistic effect of surface oxygen vacancies and hydroxyl groups on Cu-doped TiO2 photocatalyst for hydrogen evolution

The intricate nature of the titanium dioxide (TiO2) photocatalytic system, influenced by Cu doping, often yields conflicting outcomes. This study addresses this complexity by examining the impact of Cu ion doping in nanostructured TiO2 to augment its photocatalytic efficacy in hydrogen generation from ethanol-water mixtures. The improved performance is primarily attributed to the generation of oxygen vacancies (Ovac) within the TiO2 lattice. By adjusting the thermal processing parameters, the chemical state of Cu is modulated to optimize photocatalytic performance. Solid-state nuclear magnetic resonance (SSNMR) and density functional theory (DFT) calculations confirm that the presence of Ovac and hydroxyl groups (OH−) surface species not only facilitates local spatial charge separation but also enhances light absorption, thereby improving photocatalytic hydrogen evolution reaction (HER) rate up to 20.2 mmol h−1 g−1 under UV light. Furthermore, a proposed mechanism involves the participation of Ovac and OH− species, supported by Mott-Schottky (M − S) plots and ultraviolet photoelectron spectroscopy (UPS), revealing that Cu–TiO2 exhibits a lower flat band potential (Efb) and smaller work function compared to TiO2. This research underscores the pivotal role of Cu ions and Ovac:OH− in advancing the photocatalytic activity of TiO2-based crystals, imparting noteworthy implications for sustainable hydrogen generation.

Sustainable and effective gold(I) separation from aurocyanides wastewater and its mechanism using guanidinium ionic liquids

Efficient recovery of gold(I) from aurocyanide wastewater offers a dual opportunity for secondary resource utilization and environmental harm reduction. Herein, four environmentally friendly hexaalkylguanidium ionic liquids (HGILs) were synthesized and for the first time used to extract gold(I) from aurocyanide wastewater. Critical parameters, including HGILs and modifier species, dosage, pH, initial gold(I) concentration, and temperature, were optimized. The HGIL systems exhibited excellent gold(I) extraction performance with over 99.0% of gold(I) being extracted under optimal conditions. The composition ratio of the extracted complex was determined by Job's method and slope analysis. Spectral characterization included X-ray photoelectron spectroscopy, Fourier transform infrared spectroscopy and nuclear magnetic resonance spectroscopy and density functional theory calculations confirmed that gold(I) extraction followed an anion exchange mechanism. A dicyanoaurate Au(CN)2− anion and two n-octanol molecules produced the supermolecule anion [Au(CN)2−·2 n-octanol] via hydrogen bonding, which combined with a guanidium cation to generate the stable extraction complex [HGIL+·Au(CN)2−·2 n-octanol] through electrostatic attraction. The gold(I) loaded in the ionic liquid phase was effectively stripped with potassium thiocyanate solution. The regenerated HGIL system maintained a high gold(I) extraction efficiency of over 90.0% after five extraction–stripping cycles. In addition, a two-step stripping strategy was developed for the selective separation of gold(I) and other impurity metal ions from real aurocyanide wastewater. This study proposes an efficient green process for recovering gold(I) from mine wastewater, which has potential practical application prospects.

Rearmed Bifunctional Chelating Ligand for 225Ac/155Tb Precision-Guided Theranostic Radiopharmaceuticals─H4noneunpaX.

Superior bifunctional chelating ligands, which can sequester both α-emitting radionuclides (225Ac, 213Bi) and their diagnostic companions (155Tb, 111In), remain a formidable challenge to translating targeted alpha therapy, with complementary diagnostic imaging, to the clinic. H4noneupaX, a chelating ligand with an unusual diametrically opposed arrangement of pendant donor groups, has been developed to this end. H4noneunpaX preferentially complexes Ln3+ and An3+ ions, forming thermodynamically stable (pLa = 17.8, pLu = 21.3) and kinetically inert complexes─single isomeric species by nuclear magnetic resonance and density functional theory. Metal binding versatility demonstrated in radiolabeling [111In]In3+, [155Tb]Tb3+, [177Lu]Lu3+, and [225Ac]Ac3+ achieved high molar activities under mild conditions. Efficient, scalable synthesis enabled in vivo evaluation of bifunctional H4noneunpaX conjugated to two octreotate peptides targeting neuroendocrine tumors. Single photon emission computed tomography/CT and biodistribution studies of 155Tb-radiotracers in AR42J tumor-bearing mice showed excellent image contrast, good tumor uptake, and high in vivo stability. H4noneunpaX shows significant potential for theranostic applications involving 225Ac/155Tb or 177Lu/155Tb.

Synthesis and Magnetic Studies of Two Neutral, Bis-Ligand Fe(II) Complexes Containing Carbazole-Bis(tetrazole) Ligands.

Previously reported carbazole-bis(tetrazole) (CzTR) ligands (where R = iPr and CH2-2,4,6-C6H2Me3) were used to synthesize air-stable, six-coordinate, octahedral bis-ligand Fe(II) complexes (CzTR)2Fe. The synthesis and characterization of these complexes using 1H nuclear magnetic resonance (NMR), X-ray crystallography, Mössbauer spectroscopy, and density functional theory (DFT) calculations are reported. Analysis of the magnetic properties revealed that the isopropyl derivative displays thermally induced spin crossover (SCO) over a temperature range of 150-350 K. This transition appears as an abrupt two-step transition in the solid state but simplifies to a smooth one-step transition in solution. The two-step transition in the solid state has been postulated to be due to lattice and solvation effects. In contrast, the slightly bulkier substituted CH2-2,4,6-C6H2Me3 (CH2Mes) Fe complex displays dramatically different magnetic behavior with no SCO and magnetic data suggesting low-spin Fe(II) with a possible TIP contribution. DFT calculations support the postulate that the change in magnetic behavior is primarily due to the nature of the ligand substituents.

Solvent-activated fluorescent Eu(III) complex with carbazole-benzene-tripyridine D-π-A system for rapid identification of specific alcohols

In this work, we prepared a Carbazole-Benzene-Tripyridine ligand with a d-π-A structure and synthesized its corresponding Eu (III) and Tb (III) complexes. The structures of the complexes were analyzed by single crystal X-ray diffraction. It was surprisingly that the fluorescence emission intensity of the Eu(III) complex increases significantly once the solvent was added, indicating that the fluorescence could be activated by the solvent. However, it was confirmed that in the solid state, the complex molecules in the lattice were orderly arranged and there was a π-π stacking effect. The π-π stacking caused strong intermolecular interactions leading to emission quenching. The addition of solvent broke the π-π stacking and enhanced the fluorescence of the Eu(III) complex. The color of the fluorescence emission of the Eu(III) complex depended on the kind of added solvent. The results of nuclear magnetic resonance (NMR) and density functional theory (DFT) calculations suggested that the rotation of the CC single bond in the d-π-A structure ligand in different solvents caused a change in the spatial angle between the carbazole-benzene unit and the tripolypyridine unit in the ligand, thereby changing the excited state energy of the ligand. Hence, the varied emission colors of the complex reflect differences in the energy transfer efficiency of the ligand to rare earth ion. The solvent effect of the Eu(III) complex was then successfully applied in the rapid identification of specific alcohols.

Hydrogen-Bonding Interactions of 8-Substituted Purine Derivatives.

Hydrogen bonding between nucleobases is a crucial noncovalent interaction for life on Earth. Canonical nucleobases form base pairs according to two main geometries: Watson-Crick pairing, which enables the static functions of nucleic acids, such as the storing of genetic information; and Hoogsteen pairing, which facilitates the dynamic functions of these biomacromolecules. This precisely tuned system can be affected by oxidation or substitution of nucleobases, leading to changes in their hydrogen-bonding patterns. This paper presents an investigation into the intermolecular interactions of various 8-substituted purine derivatives with their hydrogen-bonding partners. The systems were analyzed using nuclear magnetic resonance spectroscopy and density functional theory calculations. Our results demonstrate that the stability of hydrogen-bonded complexes, or base pairs, depends primarily on the number of intermolecular H-bonds and their donor-acceptor alternation. No strong preferences for a particular geometry, either Watson-Crick or Hoogsteen, were found.

Boosting Photocatalytic Activity over Graphitic Carbon Nitride by Hydrogen-Bonding-Assisted Charge Transfer

Graphitic carbon nitride (g-C3N4) offers a great number of advantages for use as a photocatalyst to facilitate a wide variety of photocatalytic reactions. However, pristine g-C3N4 suffers from unsatisfactory photocatalytic performance in actual practice. Nonetheless, as a nitrogen-rich layered material, g-C3N4 offers abundant opportunities for the formation of hydrogen bonds between the NH/NH2 groups within the layers, which can incite proton transfer reactions owing to the inherent polarity of the proton donor and acceptor in the hydrogen bond and thereby improve the transport rate of photogenerated carriers, especially for holes. Yet, relatively little work has been done to improve the photocatalytic performance of g-C3N4 through efforts to enhance its hydrogen bond network. The present work addresses this issue by constructing a hydrogen bond network on g-C3N4 by pressurizing a mixture of pristine g-C3N4 nanosheets with water at a temperature of 120 °C for 12 h. The results of nuclear magnetic resonance spectroscopy and density functional theory demonstrate that the hydrogen bonds on the g-C3N4 surfaces provide an additional pathway for the separation of photogenerated electrons and enhanced hole transfer kinetics. The hydrogen bond network formed between the g-C3N4 layers effectively suppresses charge complexation, improves the photocatalytic efficiency of g-C3N4, and increases the selectivity for photocatalytic products. Our results provide valid insights for designing g-C3N4 photocatalysts with high photocatalytic activity.

Hexadecapole strength in the rare isotopes 74,76Kr

In the Ge-Sr mass region, isotopes with neutron number N≤40 are known to feature rapid shape changes with both nucleon number and angular momentum. To gain new insights into their structure, inelastic proton scattering experiments in inverse kinematics were performed on the rare isotopes 74,76Kr. This work focuses on observables related to the Jπ=41+ states of the Kr isotopes and, in particular, on the hexadecapole degree of freedom. By performing coupled-channels calculations, hexadecapole deformation parameters β4 were determined for the Jπ=41+ states of 74,76Kr from inelastic proton scattering cross sections. Two possible coupled-channels solutions were found. A comparison to predictions from nuclear energy density functional theory, employing both non-relativistic and relativistic functionals, clearly favors the large, positive β4 solutions. These β4 values are unambiguously linked to the well deformed prolate configuration. Given the β2−β4 trend, established in this work, it appears that β4 values could provide a sensitive measure of the nuclear shell structure.

A new complex of silver(I) with probenecid: Synthesis, characterization, and studies of antibacterial and extended spectrum β-lactamases (ESBL) inhibition activities

This article describes the in vitro antibacterial and β-lactamase inhibition of a novel silver(I) complex with the sulfonamide probenecid (Ag-PROB). The formula Ag2C26H36N2O8S2·2H2O for the Ag-PROB complex was proposed based on elemental analysis. High-resolution mass spectrometric studies revealed the existence of the complex in its dimeric form. Infrared, nuclear magnetic resonance spectroscopies and Density Functional Theory calculations indicated a bidentate coordination of probenecid to the silver ions by the oxygen atoms of the carboxylate. In vitro antibacterial activities of Ag-PROB showed significant growth inhibitory activity over Mycobacterium tuberculosis, S. aureus, and P. aeruginosa PA01biofilm-producers, B. cereus, and E. coli. The Ag-PROB complex was active over multi-drug resistant of uropathogenic E. coli extended spectrum β-lactamases (ESBL) producing (EC958 and BR43), enterohemorrhagic E. coli (O157:H7) and enteroaggregative E. coli (O104:H4). Ag-PROB was able to inhibit CTX-M-15 and TEM-1B ESBL classes, at concentrations below the minimum inhibitory concentration for Ag-PROB, in the presence of ampicillin (AMP) concentration in which EC958 and BR43 bacteria were resistant in the absence of Ag-PROB. These results indicate that, in addition to ESBL inhibition, there is a synergistic antibacterial effect between AMP and the Ag-PROB. Molecular docking results revealed potential key residues involved in interactions between Ag-PROB, CTX-M-15 and TEM1B, suggesting the molecular mechanism of the ESBL inhibition. The obtained results added to the absence of mutagenic activity and low cytotoxic activity over non-tumor cell of the Ag-PROB complex open a new perspective for future in vivo tests demonstrating its potential of use as an antibacterial agent.

Thiocarbohydrazone and Chalcone-Derived 3,4-Dihydropyrimidinethione as Lipid Peroxidation and Soybean Lipoxygenase Inhibitors.

The potential of the 4,6-diphenyl-3,4-dihydropyrimidine-2(1H)-thione (abbreviated as KKII5) and (E)-N'-benzylidenehydrazinecarbothiohydrazide (abbreviated as DKI5) compounds as possible drug leads is investigated. KKII5 and DKI5 are synthesized in high yield of up to 97%. Their structure, binding in the active site of the LOX-1 enzyme, and their toxicity are studied via joint experimental and computational methodologies. Specifically, the structure assignment and conformational analysis were achieved by applying homonuclear and heteronuclear 2D nuclear magnetic resonance (NMR) spectroscopy (2D-COSY, 2D-NOESY, 2D-HSQC, and 2D-HMBC) and density functional theory (DFT). The obtained DFT lowest energy conformers were in agreement with the NOE correlations observed in the 2D-NOESY spectra. Additionally, docking and molecular dynamics simulations were performed to discover their ability to bind and remain stabile in the active site of the LOX-1 enzyme. These in silico experiments and DFT calculations indicated favorable binding for the enzyme under study. The strongest binding energy, -9.60 kcal/mol, was observed for dihydropyrimidinethione KKII5 in the active site of LOX-1. ADMET calculations showed that the two molecules lack major toxicities and could serve as possible drug leads. The redox potential of the active center of LOX-1 with the binding molecules was calculated via DFT methodology. The results showed a significantly smaller energy attachment of 2.8 eV with KKII5 binding in comparison to DKI5. Thus, KKII5 enhanced the ability of the active center to receive electrons compared to DKI5. This is related to the stronger binding interaction of KKII5 relative to that of DK15 to LOX-1. The two very potent LOX-1 inhibitors exerted IC50 19 μΜ (KKII5) and 22.5 μΜ (DKI5). Furthermore, they both strongly inhibit lipid peroxidation, namely, 98% for KKII5 and 94% for DKI5.