The giant kelp Macrocystis pyrifera is categorized as a keystone species, forming highly productive forests that provide ecosystem services and host a remarkable marine biodiversity of macro and microorganisms. The association of microorganisms with the algae is close and can be functionally interdependent. The Magellan Strait, a natural marine passage between the Atlantic and Pacific oceans, harbours extensive giant kelp forests. However, information related to the diversity of bacterial communities in this region is still scarce. In this study, 16S rRNA gene metabarcoding was used to characterize the diversity and composition of bacterial communities associated with apical blades and sporophylls of M. pyrifera from different sites (Bahía Buzo, San Gregorio, and Buque Quemado). Additionally, data from satellites and reanalysis, as well as tide data, were used to characterize the environmental variability. The findings revealed discernible local variations in bacterial taxa across sampling sites, with consistent dominance of Proteobacteria, Verrucomicrobia, Bacteroidetes, and Planctomycetes. Furthermore, a distinctive bacterial community structure was identified between apical and sporophyll blades of M. pyrifera. This research marks the inaugural characterization of bacterial community diversity and composition associated with M. pyrifera in the remote and understudied sub-Antarctic region of the Magellan Strait.
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