Abstract The models that participated in the Coupled Model Intercomparison Project (CMIP) exhibit large biases in Arctic sea ice climatology that seem related to biases in seasonal atmospheric and oceanic circulations. Using historical runs of 34 CMIP6 models from 1979 to 2014, we investigate the links between the climatological sea ice concentration (SIC) biases in September and atmospheric and oceanic model climatologies. The main intermodel spread of September SIC is well described by two leading EOFs, which together explain ∼65% of its variance. The first EOF represents an underestimation or overestimation of SIC in the whole Arctic, while the second EOF describes opposite SIC biases in the Atlantic and Pacific sectors. Regression analysis indicates that the two SIC modes are closely related to departures from the multimodel mean of Arctic surface heat fluxes during summer, primarily shortwave and longwave radiation, with incoming Atlantic Water playing a role in the Atlantic sector. Local and global links with summer cloud cover, low-level humidity, upper or lower troposphere temperature/circulation, and oceanic variables are also found. As illustrated for three climate models, the local relationships with the SIC biases are mostly similar in the Arctic across the models but show varying degrees of Atlantic inflow influence. On a global scale, a strong influence of the summer atmospheric circulation on September SIC is suggested for one of the three models, while the atmospheric influence is primarily via thermodynamics in the other two. Clear links to the North Atlantic oceanic circulation are seen in one of the models.