North American Freshwater Fishes Research Articles

Multi-locus phylogeny of the catfish genus Ictalurus Rafinesque, 1820 (Actinopterygii, Siluriformes) and its systematic and evolutionary implications

BackgroundIctalurus is one of the most representative groups of North American freshwater fishes. Although this group has a well-studied fossil record and has been the subject of several morphological and molecular phylogenetic studies, incomplete taxonomic sampling and insufficient taxonomic studies have produced a rather complex classification, along with intricate patterns of evolutionary history in the genus that are considered unresolved and remain under debate.ResultsBased on four loci and the most comprehensive taxonomic sampling analyzed to date, including currently recognized species, previously synonymized species, undescribed taxa, and poorly studied populations, this study produced a resolved phylogenetic framework that provided plausible species delimitation and an evolutionary time framework for the genus Ictalurus.ConclusionsOur phylogenetic hypothesis revealed that Ictalurus comprises at least 13 evolutionary units, partially corroborating the current classification and identifying populations that emerge as putative undescribed taxa. The divergence times of the species indicate that the diversification of Ictalurus dates to the early Oligocene, confirming its status as one of the oldest genera within the family Ictaluridae.

Acoustic Variation in Ictalurid Catfishes

More than 35,000 ray-finned fish (Actinopterygii) species are potentially using acoustic communication. However, of the approximately 1200 known soniferous fish species, few include North American freshwater fish. To help fill this knowledge gap in fish acoustic communication, which holds great promise for conservation monitoring, I document acoustic measurements (duration 90%, bandwidth 90%, number of pulses, center frequency, and peak time) across 4 species (Ameiurus nebulosus, Ameiurus natalis, Noturus flavus, Ictalurus punctatus) from 3 genera of the North American catfish family, Ictaluridae. This was done by recording 10 trials of disturbance calls from 28 individuals and analyzing 1294 sounds using Raven Pro 1.6 software. I hypothesized that: 1) more phylogenetically/morphologically related species would have more similar acoustic features, 2) acoustic features would correlate with one another, and 3) acoustic features would correlate with standard length (cm). For hypothesis 1, I instead found that Ameriurus nebulosus was the most acoustically dissimilar, despite having the highest level of phylogenetic/morphological similarity with Ameirus natalis. However, only Ameriurus nebulosus' number of pulses were significantly different from other species. For hypothesis 2, it was found that many acoustic measurements were correlated with one another as predicted. For hypothesis 3, only the number of pulses was found to be significantly correlated with standard length, but minimally so. These findings further support that pulsation measurements may contain a high level of phylogenetic signal, given that it is the most crucial characteristic to differentiate species.

Species invasiveness and community invasibility of North American freshwater fish fauna revealed via trait-based analysis

While biological invasions are recognized as a major threat to global biodiversity, determining non-native species’ abilities to establish in new areas (species invasiveness) and the vulnerability of those areas to invasions (community invasibility) is challenging. Here, we use trait-based analysis to profile invasive species and quantify the community invasibility for >1,800 North American freshwater fish communities. We show that, in addition to effects attributed to propagule pressure caused by human intervention, species with higher fecundity, longer lifespan and larger size tend to be more invasive. Community invasibility peaks when the functional distance among native species was high, leaving unoccupied functional space for the establishment of potential invaders. Our findings illustrate how the functional traits of non-native species determining their invasiveness, and the functional characteristics of the invaded community determining its invasibility, may be identified. Considering those two determinants together will enable better predictions of invasions.

Body size is not correlated with the evolution of male coloration in darters (Percidae: Etheostomatinae)

Abstract Coloration and body size are among the many morphological traits that vary among fish lineages. Elaborate coloration and body size covary in other animal groups, but relationships between these two morphological characteristics have not been rigorously examined in fishes. We formally test for correlations between coloration and body size in darters (Percidae: Etheostomatinae), a group of North American freshwater fishes that vary in the presence of male coloration and maximum body size. Although uncorrected analyses indicate a significant correlation between colour traits and body size in darters, phylogenetically corrected logistic regression models and ANOVAs revealed no significant correlations, suggesting body size does not act as a constraint on elaborate coloration or vice versa. These results are discussed in an ecological and behavioural context.

The North American Freshwater Migratory Fish Database (NAFMFD): Characterizing the migratory life histories of freshwater fishes of Canada, the United States and Mexico

AbstractAimMigratory freshwater fishes are those that must access discrete habitats to complete their life cycles. Freshwater fish migrations occur around the world and provide numerous ecosystem services for humans and natural systems; however, many migratory species are in decline globally. A limiting factor to successfully conserve freshwater migratory fishes is that the migratory life histories of many species are unknown or only partially described. To provide researchers with critical and comprehensive information to conserve migratory fishes, we developed the North American Freshwater Migratory Fish Database (NAFMFD).LocationCanada, Mexico and the United States.TaxonFreshwater fish.MethodsTo develop this database, we assigned migratory status, pattern and behaviour to a comprehensive list of freshwater fish species found throughout North America. We assembled the database which included assignments (i.e. migratory status, pattern and behaviour) as well as the sources used to make the assignments. Researchers and managers from across North America reviewed the database for completeness and accuracy on the migratory life histories of fishes.ResultsThe database synthesizes current knowledge of migratory status, pattern and behaviour of native and non‐native freshwater fishes throughout North America, including 1250 species representing 79 families and 325 genera. Results showcase the diversity of migratory life histories of freshwater fishes on the continent, including that at least 25% of North American freshwater fishes are migratory, 23% are non‐migratory and 44% have undetermined migratory status.Main conclusionsNAFMFD improves the quality of migratory data accessible to researchers, which supports a more holistic understanding of the threats encountered by migratory fishes, including habitat fragmentation. The approach we used in developing NAFMFD can provide guidance for developing similar databases in other regions. Collectively, our work offers new insights into the range of freshwater fish migratory life histories, stimulating a need to better understand this diversity globally.

Assessing the genetic diversity of the metacercariae of Posthodiplostomum minimum (Trematoda: Diplostomidae) in Middle American freshwater fishes: one species or more?

Trematode taxonomy is mainly based on the morphological traits of adults. The identification of metacercariae is challenging because such traits are not developed in larval forms, and they even may show some level of morphological variability. Studies testing the potential correspondence between morphological differences and genetic variation of parasites are still lacking. The metacercariae of Posthodiplostomum minimum are probably the diplostomids more widely distributed in North and Middle American freshwater fish, and their intraspecific morphological variability has been attributed to the effect exerted by the host. Here, we tested the hypothesis whether they represent a single species, or a species complex by assessing the genetic divergence and phylogenetic relationships of metacercariae sampled from several host species in a wide geographical range across Middle America. The internal transcribed spacers (ITS1-5.8S-ITS2), and the mitochondrial COI gene were sequenced for 124 and 55 metacercariae, respectively. Phylogenetic analysis inferred from ITS sequences uncovered six well-supported monophyletic lineages. The six lineages show no correspondence to any Posthodiplostomum species for which sequences are available thus far in GenBank. Lineages exhibit some degree of host specificity; Lineages I, II, IV and V are primarily parasites of cyprinodontiforms of the families Poeciliidae, Goodeidae, Profundulidae and Fundulidae. In poeciliids there are at least four candidate species of Posthodiplostomum, some of them occurring in sympatry; instead, Lineages II and VI are exclusively parasites of cichlids. This study contributes to our understanding of the diversity of larval forms of diplostomids and provides an opportunity to further study their life cycles.

Lethal and sublethal effects of diluted bitumen and conventional oil on fathead minnow (Pimephales promelas) larvae exposed during their early development.

The increasing extraction of bitumen from the oil sands region in Canada is creating a need for transport. Spills from current and projected pipelines represent a significant environmental risk, especially for freshwater ecosystems. The toxicity of diluted bitumen (dilbit) on freshwater fish is largely unknown. This study assessed the toxicity of two dilbits (Clearwater McMurray and Bluesky) and compared their toxicity to a conventional oil (Lloydminster Heavy) on fathead minnow (Pimephales promelas) larvae. Larvae were exposed to various concentrations of the water-accommodated fraction (WAF) of the oils during 7 days from hatching. In the WAF treatments, the concentrations of volatile organic compounds (VOCs), including benzene, toluene, ethylbenzene, xylene (BTEX), hydrocarbons containing 6 to 10 carbon atoms (C6-10), and polycyclic aromatic hydrocarbons (PAHs) and their alkylated forms were measured. Both dilbits contained higher concentrations of light components, while the conventional oil contained the highest concentrations of PAHs and alkylated PAHs. The Clearwater McMurray dilbit induced a higher mortality, with a maximum of 65.3%, while the other oils induced a similar mortality up to 16.5% and 18.6% for Lloydminster and for Bluesky, respectively. All three oils induced an increase in gene expression of the phase I detoxification enzyme (cyp1a) with increasing total hydrocarbon concentrations. All three exposures induced a similar increase in glutathione S-transferase (GST) activity, but no change in gst gene expression. For the Bluesky and Lloydminster exposures, an increase in malondialdehyde concentration was also observed, suggesting a rate limiting capacity of GST and phase II enzymes to perform the biotransformation of the PAH metabolites. Overall, this study brings new insights on the toxicity of dilbits in comparison to conventional oils on early life stages of North American freshwater fish and demonstrated that dilbits can be more toxic than conventional oils, depending on their composition and diluent proportions.

Phylogeny and time scale of diversification in the fossil-rich sunfishes and black basses (Teleostei: Percomorpha: Centrarchidae)

Species of the North American freshwater fish lineage Centrarchidae are apex predators in their habitats and are among the world’s most popular sport fishes. Centrarchids boast a rich fossil record that extends from the latest Eocene to the Pleistocene. To investigate the phylogeny and timing of diversification of Centrarchidae, we deploy a dataset of DNA sequences of 16 nuclear genes sampled from nearly all of the recognized and undescribed species. We also utilize previously published morphological datasets to assess the phylogenetic placement of one of the oldest known centrarchid fossils, †Plioplarchus whitei. A Bayesian multispecies coalescent species tree analysis provides insight on relationships that evaded resolution in earlier studies, such as the relationships of Acantharchus pomotis, the resolution of a clade consisting of species previously synonymized under the Spotted Bass, Micropterus punctulatus, and a clade of recently described species previously considered populations of the Redeye Bass, Micropterus coosae. This new molecular phylogeny and the inclusion of †P. whitei and other centrarchid fossils in the tip-dated fossilized birth–death analysis results in a new hypothesis of the timing of diversification in Centrarchidae that contextualizes the ages of centrarchid fossils to the timing of speciation among the extant species. In addition to providing new temporal perspectives on the diversification of freshwater fishes in North America, this study may close of the chapter of centrarchid phylogeny inferred using Sanger-sequenced genes, as the use of genomic-scale datasets becomes mainstream in the phylogenetics of fishes.

Nonlethal Fin Sampling of North American Freshwater Fishes for Food Web Studies Using Stable Isotopes

AbstractFood web investigations using stable isotope analyses inform management strategies by quantitatively describing interactions among species. Fin tissue is a nonlethal alternative to white muscle tissue for obtaining stable isotope ratios of fish. However, the relationship between fin and muscle values must be evaluated before fin tissue can be substituted for muscle tissue. We examined the relationships between fin and muscle carbon (δ13C) and nitrogen (δ15N) isotope ratios in 15 species of North American freshwater fish using linear regression for multispecies models and species‐specific models, and compared the performance of our models against models developed for European and Australian freshwater fishes. Fin and muscle isotope ratios differed but covaried with good explanatory power ( = 0.74–0.99; = 0.45–0.99). Useful conversions of fin isotope values were provided by our species‐specific models (δ13Cerror = 0.27‰; δ15Nerror = 0.22‰), and to a lesser extent our multispecies models (δ13Cerror = 0.51‰; δ15Nerror = 0.35‰) and the European models (δ13Cerror = 0.57‰; δ15Nerror = 0.42‰). Models developed for Australian fishes gave less precise conversions when applied to North American freshwater species (δ13Cerror = 0.78‰; δ15Nerror = 0.82‰). We recommend using species‐specific conversion models when available, but in their absence, multispecies models may be adequate. Our study contributes to a growing literature seeking fin–muscle conversion models, which should serve to reduce the lethal take of individuals.

Physiological effects of catch-and-release angling on freshwater drum (Aplodinotus grunniens)

Many catch-and-release angling events involve air exposure and exhaustive exercise that elicit a physiological stress response, and depending on a variety of factors, delayed mortality is a possible outcome. There have been ample studies in this area, however, significant gaps exist in the literature for species that are targeted by more specialized anglers, such as freshwater drum (Aplodinotus grunniens). We quantified physiological and reflex responses in freshwater drum following angling, across seasons. Once a fish was on the line, the fight duration and time exposed to air were varied to account for differences in angler skill level (fight time range: 5 s to 2 min; air exposure range: 20 s to 3 min). Location and severity of injury were determined, blood biopsies were taken to quantify physiological stress, and reflex impairment was assessed. Thirty-one percent of fish captured were deeply hooked in the esophagus tissue. Freshwater drum experienced a disruption in homeostasis as blood glucose, plasma cortisol, and plasma lactate increased significantly from baseline values following angling. Additionally, seasonal differences were observed for blood glucose and plasma cortisol as higher values were observed in the summer when compared to the spring. The ‘orientation’ reflex was the most frequently impaired (29 % of fish lacked this reflex), but impairment did not differ seasonally. Because freshwater drum have the largest latitudinal range of any North American freshwater fish and are being targeted more frequently by anglers as of late, it is important to fill this knowledge gap regarding their responses to angling events to develop best practices for anglers to promote conservation. The wide distribution of freshwater drum may also make them a candidate model species for addressing the convergence between assessing the impacts of catch-and-release angling and other environmental issues facing freshwater fishes, such as climate change.

Breeding behaviour predicts patterns of natural hybridization in North American minnows (Cyprinidae).

Premating barriers such as variation in reproductive behaviour can evolve quickly, but because gametic and postzygotic incompatibilities often evolve more slowly, circumstances that bring gametes into contact can breach the boundaries of premating isolation. In aquatic environments, the gametes of organisms with external fertilization are released into a constantly moving environment and may come into contact with heterospecific gametes. In fishes, nest association (spawning in another species' nest) is a behaviour that brings gametes from different species into close spatiotemporal proximity. These interactions might increase chances of hybridization, especially when multiple species associate with a single nest builder. This study addresses these interactions in the largest clade of North American freshwater fishes, the minnows (Cyprinidae). We compiled a list of over 17,000 hybrid specimens in conjunction with species distribution data, breeding behaviours, and an inferred phylogeny to test if breeding behaviour, in addition to evolutionary history, is an important predictor of hybridization. We find that breeding behaviour is a significant predictor of hybridization, even when phylogenetic relatedness and divergence time are accounted for. Specifically, nest associates are more likely to hybridize with other nest associates whereas non-nesting species had relatively low rates of hybridization.

Ex Uno Plures? Morphotype and Lineage Diversity of Bothriocephalus (Cestoda: Bothriocephalidea) in North American Freshwater Fishes.

Morphological and molecular evaluation of tapeworms of the genus Bothriocephalus Rudolphi, 1808 (Cestoda: Bothriocephalidea), based on newly collected and uniformly fixed worms from freshwater fishes in Canada and the United States has revealed unexpected diversity. With a combination of selected morphological features and 4 molecular markers (18S rDNA V8 region, ITS1, ITS2, and COI gene sequences), the following morphotypes and lineages of the Bothriocephalus cuspidatus Cooper, 1917 complex were identified, several of which are specific to their respective fish definitive hosts and may represent separate species: B. cuspidatus sensu stricto from walleye, Sander vitreus (type host), which likely includes a miniature morphotype from Johnny darter, Etheostoma nigrum (both Percidae); Bothriocephalus morphotype from pumpkinseed, Lepomis gibbosus (Centrarchidae); and Bothriocephalus morphotype from rock bass, Ambloplites rupestris (Centrarchidae). The Bothriocephalus morphotype from goldeye, Hiodon alosoides (Hiodontidae), may also represent a separate lineage (possibly Bothriocephalus texomensisSelf, 1954) but requires additional studies. A morphotype from smallmouth bass, Micropterus dolomieu, based on a single specimen, is morphologically and genetically very similar to the morphotype from rock bass. Morphological study of the scolex and strobila of heat-killed and fixed specimens has revealed consistent differences, often subtle, that allowed us to differentiate between these morphotypes.

Description of a new species of cryptic snubnose darter (Percidae: Etheostomatinae) endemic to north-central Mississippi.

Many subclades within the large North American freshwater fish genus Etheostoma (Percidae) show brilliant male nuptial coloration during the spring spawning season. Traditionally, perceived differences in color were often used to diagnose closely related species. More recently, perceived differences in male nuptial color have prompted further investigation of potential biodiversity using genetic tools. However, cryptic diversity among Etheostoma darters renders male nuptial color as unreliable for detecting and describing diversity, which is foundational for research and conservation efforts of this group of stream fishes. Etheostoma raneyi (Yazoo Darter) is an imperiled, range-limited fish endemic to north-central Mississippi. Existing genetic evidence indicates cryptic diversity between disjunctly distributed E. raneyi from the Little Tallahatchie and Yocona river watersheds despite no obvious differences in male color between the two drainages. Analysis of morphological truss and geometric measurements and meristic and male color characters yielded quantitative differences in E. raneyi from the two drainages consistent with genetic evidence. Morphological divergence is best explained by differences in stream gradients between the two drainages. Etheostoma faulkneri, the Yoknapatawpha Darter, is described as a species under the unified species concept. The discovery of cryptic diversity within E. raneyi would likely not have occurred without genetic tools. Cryptic diversity among Etheostoma darters and other stream fishes is common, but an overreliance on traditional methods of species delimitation (e.g., identification of a readily observable physical character to diagnose a species) impedes a full accounting of the diversity in freshwater fishes in the southeastern United States.

Increasing confidence for discerning species and population compositions from metabarcoding assays of environmental samples: case studies of fishes in the Laurentian Great Lakes and Wabash River

Community composition data are essential for conservation management, facilitating identification of rare native and invasive species, along with abundant ones. However, traditional capture-based morphological surveys require considerable taxonomic expertise, are time consuming and expensive, can kill rare taxa and damage habitats, and often are prone to false negatives. Alternatively, metabarcoding assays can be used to assess the genetic identity and compositions of entire communities from environmental samples, comprising a more sensitive, less damaging, and relatively time- and cost-efficient approach. However, there is a trade-off between the stringency of bioinformatic filtering needed to remove false positives and the potential for false negatives. The present investigation thus evaluated use of four mitochondrial (mt) DNA metabarcoding assays and a customized bioinformatic Bioinformatic pipeline to increase confidence in species identifications by removing false positives, while achieving high detection probability. Positive controls were used to calculate sequencing error, and results that fell below those cutoff values were removed, unless found with multiple assays. The performance of this approach was tested to discern and identify North American freshwater fishes using lab experiments (mock communities and aquarium experiments) and processing of a bulk ichthyoplankton sample. The method then was applied to field environmental (e) DNA water samples taken concomitant with electrofishing surveys and morphological identifications. This protocol detected 100% of species present in concomitant electrofishing surveys in the Wabash River and an additional 21 that were absent from traditional sampling. Using single 1 L water samples collected from just four locations, the metabarcoding assays discerned 73% of the total fish species that were discerned during four months of an extensive electrofishing river survey in the Maumee River, along with an additional nine species. In both rivers, total fish species diversity was best resolved when all four metabarcoding assays were used together, which identified 35 additional species missed by electrofishing. Ecological distinction and diversity levels among the fish communities also were better resolved with the metabarcoding assays than with morphological sampling and identifications, especially using all four assays together. At the population-level, metabarcoding analyses targeting the invasive round goby Neogobius melanostomus and the silver carp Hypophthalmichthys molitrix identified all population haplotype variants found using Sanger sequencing of morphologically sampled fish, along with additional intra-specific diversity, meriting further investigation. Overall findings demonstrated that the use of multiple metabarcoding assays and custom bioinformatics that filter potential error from true positive detections improves confidence in evaluating biodiversity.

Modelling patterns of coexistence of three congeneric headwater fishes

Abstract Mechanisms driving patterns of occurrence and co‐occurrence among North American freshwater fishes are poorly understood. In particular, the influence of biotic interactions on coexistence among stream reaches and their effects on regional species distribution patterns is not well understood for congeneric headwater fishes. Occupancy models provide a useful framework for examining patterns of co‐occurrence while also accounting for imperfect detection. Occupancy models may be extended to test for evidence that a dominant species influences the occurrence of a subordinate species and thus evaluate support for the hypothesis that species interactions drive patterns of coexistence. We examined patterns of occurrence and co‐occurrence at the stream‐reach scale among three species of darters (Percidae: Etheostomatinae) that occupy headwater streams within a Gulf Coastal Plain drainage in the south‐eastern U.S.A. We assessed species occurrences at 97 sites in first‐ to third‐order streams on one occasion each and used data from four sub‐reaches sampled with equal effort at each site to estimate species‐specific detection probabilities. Following sampling, a suite of habitat variables was collected at three equidistant points along each of the three transects established within a sub‐reach. Coarse (stream‐segment, catchment, network) scale variables were also incorporated using geospatial data. Single‐species and two‐species occupancy models were used to examine patterns of occupancy and coexistence. The occupancy of each species was influenced by distinct habitat variables. Goldstripe darters (Etheostoma parvipinne) were constrained by a stream size gradient, groundwater input appeared to influence the occurrence of Yazoo darters (Etheostoma raneyi), and local habitat heterogeneity (e.g. variation in depth and current velocity) appeared to influence the occupancy of redspot darters (Etheostoma artesiae). We found no evidence that the presence of one species influenced the occurrence of another within a stream‐reach based on two‐species occupancy models. Rather, species co‐occurrences were best explained as independent occurrences within a stream‐reach according to species‐specific habitat associations. Occupancy modelling may provide a suitable framework for evaluating the influence of biotic interactions among congeneric stream fishes along species‐specific habitat gradients at the stream reach scale. Our study offers insight into how habitat variation can influence coexistence of potential competitors across a large river system.

Temperature and Estrogen Alter Predator-Prey Interactions between Fish Species.

SynopsisA variety of environmental estrogens are commonly detected in human-impacted waterways. Although much is known about the effects of these environmental estrogens on the reproductive physiology and behavior of individuals within species, comparatively less is known about how these compounds alter the outcomes of interactions between species. Furthermore, few studies have considered how the effects of contaminants are modulated by natural variation in abiotic factors, such as temperature. To help fill this knowledge gap, we conducted a factorial experiment to examine the independent and combined effects of estrone (E1) and temperature on the outcome of predator–prey interactions between two common North American freshwater fishes, fathead minnows (Pimephales promelas) and bluegill sunfish (Lepomis macrochirus). Larval fathead minnows and adult sunfish were exposed to either a low (mean±standard deviation, 90.1 ± 18 ng/L; n = 16) or high (414 ± 147 ng/L; n = 15) concentration of E1 or to a solvent control for 30 days at one of four natural seasonal temperatures (15°C, 18°C, 21°C, and 24°C) before predation trials were performed. Exposure to E1 was associated with a significant increase in larval predation mortality that was independent of temperature. Across all temperature treatments, approximately 74% of control minnows survived; this survivorship significantly exceeded that of minnows exposed to either concentration of E1 (49% and 53% for minnows exposed to the low and high concentrations, respectively). However, exposure to E1 also impaired the prey-capture success of sunfish, partially mitigating predation pressure on exposed minnows. Overall prey-capture success by sunfish showed an inverted U-shaped distribution with temperature, with maximal prey consumption occurring at 21°C. This study illustrates the vulnerability of organismal interactions to estrogenic pollutants and highlights the need to include food web interactions in assessments of risk.

Metabolic rates from Bluntnose minnow (Pimephales notatus) populations at lower latitudes are more sensitive to changes in temperature than populations at higher latitudes

AbstractPredicting the potential effects of changes in climate on freshwater species requires an understanding of the relationships between physiological traits and environmental conditions among populations. While water temperature is a primary factor regulating metabolic rates in freshwater ectotherms, how metabolic rates vary across the species range is unclear. In addition, photoperiod has also been hypothesised to influence metabolic rates in freshwater taxa based on seasonal changes in activity rates. Using an experimental approach, we investigated whether variation in routine metabolic rate (RMR) and sensitivity of RMR to changes in temperature are correlated with local thermal regimes, photoperiods and body mass among ten populations across the geographic range of the Bluntnose minnow (Pimephales notatus), a North American freshwater fish species. Routine metabolic rate data were collected from populations acclimatised to three temperature treatments (9, 18 and 27°C) and correlated with water temperature and photoperiod estimates at collection locations for each population. Routine metabolic rate was negatively correlated with minimum photoperiod at 9°C, negatively correlated with weekly high temperature at 18°C and positively correlated with weekly high temperature at 27°C. Body mass was also a predictor of RMR at each temperature treatment. Thermal sensitivity of RMR was positively correlated with weekly high temperature, indicating that individuals from warmer low latitude populations experienced greater sensitivity of RMR to changes in temperature than individuals from cooler high latitude populations. These results indicate differential responses among populations to variation in temperature and suggest the importance of recognising this variation when characterising responses of freshwater taxa to increases in water temperature.

Adoption of AFS Standard Methods: The South Dakota Experience

Standardization is a critical component of scientific inquiry, but has been difficult to implement for inland fisheries sampling in North America. In 2009, the American Fisheries Society (AFS) published Standard Methods for Sampling North American Freshwater Fishes. Since publication, numerous management agencies have adopted AFS standard methods. However, few agencies have reported on the utility of AFS standard methods. Here we discuss the process of adopting AFS passive standard methods for sampling lakes and reservoirs in South Dakota during 2012–2017 by the South Dakota Department of Game, Fish, and Parks. Adoption of AFS methods took 5 years and was pursued as a defensible way to standardize passive gears used to survey most game fish across management regions. Many of the advantages, and potential challenges were realized while adopting AFS gears and methods, which will be relevant to other resource management agencies and researchers.

Phylogenomic Signatures of Ancient Introgression in a Rogue Lineage of Darters (Teleostei: Percidae).

Evolutionary history is typically portrayed as a branching phylogenetic tree, yet not all evolution proceeds in a purely bifurcating manner. Introgressive hybridization is one process that results in reticulate evolution. Most known examples of genome-wide introgression occur among closely related species with relatively recent common ancestry; however, we present evidence for ancient hybridization and genome-wide introgression between major stem lineages of darters, a species-rich clade of North American freshwater fishes. Previous attempts to resolve the relationships of darters have been confounded by the uncertain phylogenetic resolution of the lineage Allohistium. In this study, we investigate the phylogenomics of darters, specifically the relationships of Allohistium, through analyses of approximately 30,000 RADseq loci sampled from 112 species. Our phylogenetic inferences are based on traditional approaches in combination with strategies that accommodate reticulate evolution. These analyses result in a novel phylogenetic hypothesis for darters that includes ancient introgression between Allohistium and other two major darter lineages, minimally occurring 20 million years ago. Darters offer a compelling case for the necessity of incorporating phylogenetic networks in reconstructing the evolutionary history of diversification in species-rich lineages. We anticipate that the growing wealth of genomic data for clades of non-model organisms will reveal more examples of ancient hybridization, eventually requiring a re-evaluation of how evolutionary history is visualized and utilized in macroevolutonary investigations.

Estimating thermal response metrics for North American freshwater fish using Bayesian phylogenetic regression

Physiological performance in fish peaks within a well-defined range of temperatures, which is distinct for each species. Species-specific thermal responses for growth, survival, and reproduction are most commonly quantified directly through laboratory experiment or field observation, with a focus on six specific metrics: optimum growth temperature and final temperature preferendum (growth), upper incipient lethal temperature and critical thermal maximum (survival), and optimum spawning temperature and optimum egg development temperature (reproduction). These values remain unknown for many North American freshwater fish species. In this paper, we present a new statistical method (Bayesian phylogenetic regression) that uses relationships between these metrics and phenetic relatedness to estimate unknown metric values. The reliability of these estimates was compared with those derived from models incorporating taxonomic family and models without any taxonomic information. Overall, incorporating taxonomic family relatedness improved estimation accuracy across all metrics. For Salmonidae and Cyprinidae, estimates derived from Bayesian phylogenetic regression typically had the highest expected reliability. We used our methods to generate 274 estimates of unknown metric values for over 100 North American freshwater fish species.