Non-rhizosphere Soil Research Articles

Remediation mechanism of high concentrations of multiple heavy metals in contaminated soil by Sedum alfredii and native microorganisms

Pollution accident of nonferrous metallurgy industry often lead to serious heavy metal pollution of the surrounding soil. Phytoremediation of contaminated soil is an environmental and sustainable technology, and soil native microorganisms in the process of phytoremediation also participate in the remediation of heavy metals. However, the effects of high concentrations of multiple heavy metals (HCMHMs) on plants and native soil microorganisms remain uncertain. Thus, further clarification of the mechanism of phytoremediation of HCMHMs soil by plants and native soil microorganisms is required. Using the plant Sedum alfredii (S. alfredii) to restore HCMHM-contaminated soil, we further explored the mechanism of S. alfredii and native soil microorganisms in the remediation of HCMHM soils. The results showed that (i) S. alfredii can promote heavy metals from non-rhizosphere soil to rhizosphere soil, which is conducive to the effect of plants on heavy metals. In addition, it can also enrich the absorbed heavy metals in its roots and leaves; (ii) native soil bacteria can increase the abundance of signal molecule-synthesizing enzymes, such as trpE, trpG, bjaI, rpfF, ACSL, and yidC, and promote the expression of the pathway that converts serine to cysteine, then synthesize substances to chelate heavy metals. In addition, we speculated that genes such as K19703, K07891, K09711, K19703, K07891, and K09711 in native bacteria may be involved in the stabilization or absorption of heavy metals. The results provide scientific basis for S. alfredii to remediate heavy metals contaminated soils, and confirm the potential of phytoremediation of HCMHM contaminated soil.

Distribution and major driving elements of antibiotic resistance genes in the soil-vegetable system under microplastic stress

Microplastics (MPs) and antibiotic resistance genes (ARGs) are both enriched in soil-vegetable systems as a consequence of the prolonged use of agricultural mulches. MPs can form unique bacterial communities and provide potential hosts for ARGs. Therefore, MPs stress may promote the spread of ARGs from soil to crops. Increasing ARGs pollution in soil-vegetable system. In our research, we investigated the distribution and major driving elements of antibiotic resistance genes in the soil-vegetable system under microplastic stress. The results showed that MPs treatment decreased the relative abundance of ARGs in non-rhizosphere soil. High concentrations of MPs promoted the enrichment of tetracycline antibiotic resistance genes in rhizosphere soil. MPs treatment promoted the enrichment of ARGs and mobile genetic elements (MGEs) in lettuce tissues, and the overall abundance of ARGs in root after 0.5 %, 1 %, and 2 % (w/w, dry weight) polyethylene (PE) administration was considerably higher compared to that in the untreated group (p < 0.05). At the same time, high PE concentrations promoted the spread of sulfa ARGs from root to leaf. MPs also impacted the bacterial communities in the soil-plant system, and the changes in ARGs as well as MGEs in each part of the soil-vegetable system were significantly correlated with the bacterial diversity index (p < 0.05). Correlation analysis and network analysis showed that bacterial communities and MGEs were the main drivers of ARGs variation in soil-lettuce systems.

Non-rhizosphere reinforces the contributions of Feammox and anammox to nitrogen loss than rhizosphere in riparian zones

The emergence of anaerobic ammonium oxidation (anammox) coupled to iron reduction (named Feammox) refreshes the microbial pathways for nitrogen (N) loss. However, the ecological role of Feammox, compared with conventional denitrification and anammox, in microbial N attenuation in ecosystems remains unclear. Here, the specific contribution of Feammox to N loss and the underlying microbiome interactive characteristics in a riparian ecosystem were investigated through 15N isotope tracing and molecular analysis. Feammox was highlighted in the riparian interface soils and maximally contributed 14.2% of N loss. Denitrification remained the dominant contributor to N loss (68.0%–95.3%), followed by anammox (5.7%–19.1%) and Feammox (0–14.2%). The rates of Feammox and anammox significantly decreased in rhizosphere soils (0.15 ± 0.08 μg N g−1 d −1 for Feammox, 0.80 ± 0.39 μg N g−1 d −1 for anammox) compared with those in non-rhizosphere soils; however, the activities of denitrification remarkably increased in the rhizosphere (13.17 ± 3.71 μg N g−1 d −1). In rhizosphere soils, the competition between bioavailable organic matter (e.g., amino acids and carbohydrates) and ammonium for electron acceptor [i.e., Fe(III)] was the vital inducement for restricted Feammox, while the nitrite consumption boosted by heterotrophic denitrifiers was responsible for weakened anammox. The functional gene of autotrophic Acidimicrobiaceae bacterium A6, instead of heterotrophic Geobacteraceae spp., was significantly positively correlated with Feammox activity. Rare iron-reducing bacteria showed higher node degrees in the non-rhizosphere network than in the rhizosphere network. A syntrophic relationship was found between iron-reducing bacteria (e.g., Anaeromyxobacter, Geobacter) and iron-oxidizing bacteria (e.g., Sideroxydans) in the non-rhizosphere network and facilitated the Feammox pathway. This study provides an in-depth exploration of microbial driven N loss in a riparian ecosystem and introduces new insights into riparian management practices toward high-efficient N pollution alleviation.

Diversity and structure of the root-associated bacterial microbiomes of four mangrove tree species, revealed by high-throughput sequencing.

Root-associated microbes of the mangrove trees play important roles in protecting and maintaining mangrove ecosystems. At present, most of our understanding of mangrove root-related microbial diversity is obtained from specific mangrove species in selected geographic regions. Relatively little is known about the composition of the bacterial microbiota existing in disparate mangrove species microenvironments, particularly the relationship among different mangrove species in tropical environments. We collected the root, rhizosphere soil, and non-rhizosphere soil of four mangrove trees (Acanthus ilicifolius, Bruguiera gymnorrhiza, Clerodendrum inerme, and Lumnitzera racemosa) and detected the 16S rRNA gene by a conventional PCR. We performed high throughput sequencing using Illumina Novaseq 6000 platform (2×250 paired ends) to investigate the bacterial communities related with the different mangrove species. We analyzed the bacterial diversity and composition related to the diverse ecological niches of mangrove species. Our data confirmed distinct distribution patterns of bacterial communities in the three rhizocompartments of the four mangrove species. Microbiome composition varied with compartments and host mangrove species. The bacterial communities between the endosphere and the other two compartments were distinctly diverse independent of mangrove species. The large degree of overlap in critical community members of the same rhizocompartment across distinct mangrove species was found at the phylum level. Furthermore, this is the first report of Acidothermus found in mangrove environments. In conclusion, understanding the complicated host-microbe associations in different mangrove species could lay the foundation for the exploitation of the microbial resource and the production of secondary metabolites.

Effects of Sodium Selenite on the Rhizosphere Environment, Growth, and Physiological Traits of Oilseed Rape (Brassica napus L.)

Soil selenium (Se) speciation characteristics and their influence on the Se enrichment pattern and physiological characteristics of oilseed rape are poorly understood. We investigated dynamic changes in rhizosphere soil physicochemical properties, Se uptake and partitioning, biomass, and physiological indices in oilseed rape under five exogenous Se condition levels (0, 1.0, 2.5, 5.0, and 10.0 mg kg−1 Se in sodium selenite) using soil cultivation experiments. The rhizosphere pH and dissolved organic carbon in the soil solution were higher than those of the non-rhizosphere soil solution. The total Se, water-soluble Se, exchangeable Se, and organic Se contents in soils, as well as rapeseed root/leaf Se contents, significantly increased with increasing exogenous Se. Under 2.5 mg kg−1 Se, the biomass of rapeseed roots and leaves increased at the sixth week (82% and 58%) and eighth week (48% and 32%), respectively, reaching the highest level. Applications of 5.0 mg kg−1 Se at 6 and 8 weeks significantly increased the glutathione peroxidase activity (49%/82%), and decreased malondialdehyde content (23%/39%). Canonical correlation and ridge regression analyses showed that Se in the rapeseed roots/leaves significantly and positively correlated with water-soluble Se, exchangeable Se, and organic Se in rhizosphere soil. Overall, moderate-concentration Se soil application benefited oilseed rape growth (optimum = 2.5 mg kg−1 Se). Our findings reveal the response of oilseed rape to soil Se application based on plant growth and physiological traits, rhizospheric soil solution properties, and Se speciation transformation.

Impact of Parthenium hysterophorus L. invasion on soil fungal communities in the Yellow River Delta

PurposeAs an invasive plant, Parthenium hysterophorus severely impacts the ecological environment of the Yellow River Delta and reduces biodiversity in the invaded areas. The effects of P. hysterophorus invasion on the local environment became increasingly critical, while few information was available for the effects of P. hysterophorus invasion on soil bacteria. The present study aimed to reveal the impacts of hysterophorus on the fungal communities in the Yellow River Delta.MethodsSixteen soil samples including four groups (ROOT group, YRR group, YNR group, and GBS group) were collected. High-throughput methods were used to explore the fungal composition of the P. hysterophorus-invaded surrounding environment and native plant-growed environment.ResultsOur results showed that the ACE (351.97) and Chao1 (351.95) values of the rhizosphere soils of P. hysterophorus (YRR group) were the highest among the four groups, whereas the non-rhizosphere soil samples of P. hysterophorus (YNR group) had the highest Shannon (7.188) and Simpson (0.984) values. The total number of operational taxonomic units (OTUs) obtained from the four groups was 1965, with 161 common OTUs among different groups. At the phylum level, both Ascomycota and Basidiomycota were the dominant fungi, with Ascomycota having the highest abundance. At the genus level, except for the endophytic fungi of P. hysterophorus roots (ROOT group), Fusarium, Mortierella, Comoclathris, and Cladosporium were the dominant fungi in three groups. The fungal communities within the roots of P. hysterophorus were distant from other groups, indicating that the composition of the fungal communities within the roots had a low degree of similarity to the other three groups. LEfSe analysis showed that Ascomycota at the phylum level and Cladosporium, Curvularia, and Alternaria at the genus level play essential roles in the ROOT group, and Comoclathris plays a vital role in the YNR group.ConclusionsThis study explored the effects of P. hysterophorus invasion on the local soil fungal communities by analyzing the fungal communities in P. hysterophorus roots, rhizosphere soil, non-rhizosphere soil, and rhizosphere soil of native plants. Generally, P. hysterophorus rhizosphere fungi specifically affect the surrounding environment.

The leguminous Hedysarum shrubs effectively drive the diversity and structural composition of soil bacterial community through rhizocompartments in the process of desertification reversal

AbstractIn this study, we aimed to assess the impact of vegetation restoration measures on the soil microbial community in degraded land via assessing the structural changes and diversity of soil bacterial communities and their response to environmental variables in the rhizocompartments (i.e., intershrub bulk soil, rhizosphere soil, and roots) of two legumes (Hedysarum scoparium and Hedysarum mongolicum) in Mu Us Desert, China. The bacterial diversity and soil physicochemical characteristics were studied using high‐throughput 16S rRNA genome sequencing and traditional soil physicochemical indices, respectively. The rhizocompartment types and plant species jointly affected the alpha and beta diversities of bacterial communities in the rhizosphere and non‐rhizosphere soil; however, rhizocompartments played a dominant role (P &lt; 0.05). Compared with the network of root endophytes, the bacterial network in the rhizosphere soil exhibited increased total nodes, total links, harmonic geodesic distance, and modularity indices, and the structure was more complex. The root endophytic community was primarily impacted by soil nutrients (particularly nitrogen and soil organic carbon), whereas bacterial communities of bacteria in the nonrhizosphere and rhizosphere soil were significantly impacted by ammonium nitrogen and soil pH because of the response of the core bacterial taxa to soil physicochemical properties. These findings revealed that plant restoration techniques drive desertification reversal via altering the composition and diversity of soil bacterial communities. This study provided new insights regarding the ecological restoration of degraded lands in deserts.

Climate change variables modify microbial community structure and soil enzymes involved in nitrogen and phosphorus metabolism

Anthropogenic activities have threatened soil biodiversity which has a direct link with agricultural sustainability and ecosystem functionality. This study is aimed at investigating the changes in soil microbial biomass and enzyme activity in response to variations of primary climatic variables such as temperature and water regimes. Rhizosphere and non-rhizosphere soil samples were collected from an agricultural field of a rainfed area and transported to the laboratory for physicochemical analysis. These soil samples were preserved at 4 °C to be used for studying microbial biomass and enzymatic activities at varying soil temperatures (22, 33, and 44 °C) and water levels (30, 45, and 60% water holding capacity (WHC)). Urease and phosphatase activity showed a significant increase with increasing temperature. The urease and phosphatase values at a temperature of 44 °C after six weeks showed an increase of 19% and 67%, respectively, compared to the values before incubation. The microbial biomass carbon and the microbial biomass nitrogen decreased with increasing temperature and increasing time intervals. Under different temperatures, the diversity analyses of field samples showed maximum dominance of phylum proteobacteria with 70% relative abundance. With increasing water content, a relative decrease in the abundance of proteobacteria was observed. Water variability had non-significant effects on enzyme activity except at 30% WHC where a significant decrease (up to 14%) in urease activity was observed. The results showed a positive correlation between urease (r = 0.81) and phosphatase activity (r = 0.84) vs. an increase in temperature from 22 to 44 °C in soil. Based on these findings, it is concluded that changes in temperature and water levels modify microbial biomass, microbial community structure, and soil enzymatic activities involved in nitrogen and phosphorus metabolism.

Soil aggregate-associated organic carbon mineralization and its driving factors in rhizosphere soil

Understanding the determinants of soil carbon mineralization at both the aggregate and rhizosphere levels is crucial for providing precise feedback on climate change. However, the specific patterns and relative contributions of rhizosphere effects on carbon mineralization at the aggregate scale remain unclear. To address this, we conducted an incubation experiment to examine the impact of warming on soil carbon mineralization. We also assessed variations in microbial activities and soil properties across different aggregates in both rhizosphere and non-rhizosphere soils, while exploring how the rhizosphere effects modulated the response of soil respiration to warming. Our findings revealed that rhizosphere soil provides a favorable environment for microbial activities through increased nutrient input and aggregate stability, leading to significant increases in microbial biomass and enzyme activity, thus promoting soil carbon mineralization. Moreover, the spatial heterogeneity of soil aggregates contributes to the differentiation and diversity of microbial community distribution, which further enhances the diversification of carbon mineralization at the aggregate level. Notably, macroaggregates play a significant role in soil carbon flux, making a substantial contribution to carbon turnover in the ecosystem. The partial least squares (PLS) path analysis indicated that the rhizosphere positively increased the contributions of soil properties and microbial variables to the overall amount of soil cumulative mineralization, with soil nutrients playing a crucial role among these factors. These findings highlight the complex regulatory role of substrate quality in soil carbon mineralization dynamics at the aggregate scale, underscoring its far-reaching implications for accurately predicting the feedback to climate change in soil carbon mineralization.

Effects of temporal and spatial scales on soil yeast communities in the peach orchard.

Shihezi Reclamation Area is located at the southern edge of the Junggar Basin, with natural, soil, and climatic conditions unique to the production of peaches. In turn, peach orchards have accumulated rich microbial resources. As an important taxon of soil fungi, the diversity and community structure changes of yeast in the soil of peach orchards on spatial and temporal scales are still unknown. Here, we aimed to investigate the changes in yeast diversity and community structure in non-rhizosphere and rhizosphere soils of peach trees of different ages in the peach orchard and the factors affecting them, as well as the changes in the yeast co-occurrence network in the peach orchard at spatial and temporal scales. High-through put sequencing results showed that a total of 114 yeast genera were detected in all soil samples, belonging to Ascomycota (60 genera) and Basidiomycota (54 genera). The most dominant genus, Cryptococcus, was present in greater than 10% abundance in each sample. Overall, the differences in yeast diversity between non-rhizosphere and rhizosphere soil of peach trees at 3, 8 and 15 years were not significant. Principal coordinate analysis (PCoA) showed that differences in yeast community structure were more pronounced at the temporal scale compared to the spatial scale. The results of soil physical and chemical analysis showed that the 15-year-old peach rhizosphere soil had the lowest pH, while the OM, TN, and TP contents increased significantly. Redundancy analysis showed that soil pH and CO were key factors contributing to changes in soil yeast community structure in the peach orchard at both spatial and temporal scales. The results of co-occurrence network analysis showed that the peach orchard soil yeast network showed synergistic effects as a whole, and the degree of interactions and connection tightness of the 15-year-old peach orchard soil yeast network were significantly higher than the 3- and 8-year-old ones on the time scale. The results reveal the distribution pattern and mechanism of action of yeast communities in peach orchard soils, which can help to develop effective soil management strategies and improve the stability of soil microecology, thus promoting crop growth.

Enhancement of Phytoremediation of Heavy Metal Pollution Using an Intercropping System in Moso Bamboo Forests: Characteristics of Soil Organic Matter and Bacterial Communities

Heavy metal pollution in soil is a major global issue, and one effective method for addressing it is phytoremediation through bamboo planting. Nevertheless, there is a notable gap in our knowledge as no studies have explored the characteristics of soil organic matter (SOM) and the bacterial communities in bamboo forests during the remediation process. To bridge this knowledge gap, we conducted research to investigate the impact of different bamboo planting patterns on the SOM characteristics and microbial communities in soils contaminated with heavy metals. The contents of SOM and dissolved organic matter (DOM) in rhizosphere and non-rhizosphere soils differed significantly between monocropping and intercropping systems, with DOM accounting for only 1.7%–2.5% of SOM. Fourier transform infrared spectra showed that the contents of SOM polysaccharides C-O, carbonate C-O, aliphatic methyl, and methylene increased, while the aromatic C=C abundance decreased in the intercropping rhizosphere soil. The differences between bamboo cultivation patterns in the rhizosphere and non-rhizosphere soils were elucidated using the biomarkers, including MND1 and Nitrospira (non-rhizosphere), and Sphingomonas (rhizosphere). Heavy metals, DOM, SOM, and refined organic functional groups, especially C-O in polysaccharides and symmetric carboxylate, were the determining factors of soil bacterial communities. Compared to monocropping, intercropping increased the accumulation of Zn and Cd in bamboo shoots by 35% and 40%, respectively, and hence, intercropping soil, with a low toxicity, was suitable for bamboo shoot sprouting. Intercropping can alter the characteristics of SOM and bacterial communities and plays a vital role in phytoremediation and shoot growth in bamboo forests. Future studies on soil carbon dynamics and nutrient status during heavy metal remediation will improve our knowledge of soil transformation and its impact on soil ecosystem health and productivity.

Differential effects of cow dung and its biochar on Populus euphratica soil phosphorus effectiveness, bacterial community diversity and functional genes for phosphorus conversion.

Continuous monoculture leading to soil nutrient depletion may cause a decline in plantation productivity. Cow dung is typically used as a cheap renewable resource to improve soil nutrient status. In this study, our purpose was to compare the effects of different cow dung return methods (direct return and carbonization return) on soil microbial communities and phosphorus availability in the root zone (rhizosphere soil and non-rhizosphere soil) of P.euphratica seedlings in forest gardens and to explore possible chemical and microbial mechanisms. Field experiments were conducted. Two-year-old P.euphratica seedlings were planted in the soil together with 7.5 t hm-2 of cow dung and biochar made from the same amount of cow dung. Our findings indicated that the available phosphorus content in soil subjected to biochar treatment was considerably greater than that directly treated with cow dung, leading to an increase in the phosphorus level of both aboveground and underground components of P.euphratica seedlings. The content of Olsen-P in rhizosphere and non-rhizosphere soil increased by 134% and 110%, respectively.This was primarily a result of the direct and indirect impact of biochar on soil characteristics. Biochar increased the biodiversity of rhizosphere and non-rhizosphere soil bacteria compared with the direct return of cow dung. The Shannon diversity index of carbonized cow manure returning to field is 1.11 times and 1.10 times of that of direct cow manure returning to field and control, and the Chao1 diversity index is 1.20 times and 1.15 times of that of direct cow manure returning to field and control.Compared to the direct addition of cow dung, the addition of biochar increased the copy number of the phosphorus functional genes phoC and pqqc in the rhizosphere soil. In the biochar treatment, the abundance of the phosphate-solubilizing bacteria Sphingomonas and Lactobacillus was significantly higher than that in the other treatments, it is relative abundance was 4.83% and 2.62%, respectively, which indirectly improved soil phosphorus availability. The results indicated that different cow dung return methods may exert different effects on phosphorus availability in rhizosphere and non-rhizosphere soils via chemical and microbial pathways. These findings indicated that, compared to the direct return of cow dung, biochar return may exert a more significant impact on the availability of phosphorus in both rhizosphere and non-rhizosphere soils, as well as on the growth of P.euphratica seedlings and the microbial community.

Phytoremediation Effect and Soil Microbial Community Characteristics of Jiulong Iron Tailings Area, Jiangxi

The aim of this paper was to explore the remediation effect and mechanism of Wetland pine (Pinus elliottii), Chinese fir (Cunninghamia lanceolata (Lamb.) Hook), and Alder (Alnus cremastogyne Burkill) on heavy metal contaminated soil in the iron tailings of Jiulong Iron Tailings Area. At the same time, the specificity of plant rhizosphere and non-rhizosphere soil microbial community structure and ecological function were analyzed based on macrogenomic sequencing. The results showed that the dominant microbial genera in J1 (control) was Acidobacteria, followed by Proteobacteria and Actinobacteria. The microbial genera with the highest percentage of relative abundance in J2, J3, J4, J5, and J6 (J2, Wetland Pine rhizosphere; J3, Wetland Pine non-rhizosphere; J4, Chinese fir rhizosphere; J5, Alder rhizosphere; J6, Alder non-rhizosphere) were Proteobacteria, followed by Acidobacteria, and Actinobacteria. It was found that Proteobacteria promoted heavy metal solubilization, activated heavy metals, and converted their forms to improve plant uptake of heavy metals. This proves that the microorganisms of Proteobacteria are the key microbial genera in the study of regional heavy metal remediation. The antibiotic resistance genes (ARGs) in microorganisms can respond to the inducement of heavy metals. Here, we investigated the relationship between the abundance of soil microorganisms ARGs and heavy metal pollution in Jiulong Iron Tailings Area. There are significant differences in the quantity and category of ARGs in the rhizosphere and non-rhizosphere soil samples of the three tree species. The results of this study provide the foundation for the theory and practice of remediation of heavy metal contamination in soils of iron tailing areas in Jiulong Iron Tailings Area in similar stand conditions.

Characteristics of Microbial Abundance in Rhizosphere and Non-Rhizosphere Soils of Permafrost Peatland, Northeast China

The rhizosphere microenvironment is crucial to plant–soil physiological processes. The differences among microbial communities in the rhizosphere and non-rhizosphere peatland topsoil (0–15 cm) and subsoil (15–30 cm) in five plant communities dominated by Carex schmidtii, Chamaedaphne calyculata, Ledum palustre, Betula fruticosa, and Vaccinium uliginosum, as well as non-rhizosphere soil in discontinuous and continuous permafrost regions, were studied. We found that the bacteria and nifH gene abundances in the C. calyculata rhizosphere soil in the discontinuous permafrost region were higher than those in continuous permafrost region, while the nirK and nifH gene abundances in the non-rhizosphere soil of the discontinuous permafrost region were lower than those in the continuous permafrost region. The ratio of bacteria to fungi decreased and that of nirK to nirS increased significantly from the discontinuous to the continuous permafrost region, indicating that permafrost degradation can change soil microbial community composition. Fungal abundance was higher in the rhizosphere than the non-rhizosphere soils, suggesting that plant roots provide a more suitable environment for fungi. Moreover, the abundances of the topsoil bacteria; the fungi; and the nirK, nirS, and nifH genes were higher than those in the subsoil because of the organic matter from plant litter as a source of nutrients. The microbial abundance in the subsoil was also more affected by nutrient availability. To sum up, the microbial abundance varied among the different types of rhizosphere and non-rhizosphere soils, and the carbon and nitrogen cycling processes mediated by soil microorganisms may be greatly altered due to permafrost degradation under climate warming.

Study on the Soil Microbial Diversity of Cymbidium goeringii and Cymbidium faberi in the Qinling Mountains after Introduction and Domestication

Rhizosphere microbial communities have abundant species and a large number, and affect the physiology and growth of plants. When studying rhizosphere microbes, the rhizosphere ecosystem function and protection of wild orchids will be facilitated. By using high-throughput sequencing technology, the rhizosphere and non-rhizosphere bacteria and fungi of wild Cymbidium goeringii and Cymbidium faberi in the Qinling Mountains were analyzed at phylum, class, order, family, and genus levels to explore the rhizosphere bacterial and fungal community structure and diversity of orchid plants (C. goeringii and C. faberi) under natural conditions. The results showed that at the phylum level Proteobacteria was dominant in rhizosphere and non-rhizosphere soil of C. goeringii and C. faberi, but the proportion was different. The abundance of Proteobacteria in rhizosphere soil of C. faberi was the highest (35.5%), which was about 1.3 times of that in non-rhizosphere soil. Bacteroidetes accounted for 17.2% in rhizosphere soil of C. goeringii, much higher than that of non-rhizosphere soil (7.92%). The dominant groups of fungi in rhizosphere soil of C. goeringii and C. faberi were both Ascomycota. At the genus level, PCoA analysis showed that the community structure of bacteria and fungi in different samples was not only common but also specific, which was manifested in the similar dominant species but different subdominant species. This difference is reflected in the composition and relative abundance of microbial communities between different samples, and will gradually become obvious with the refinement of genera.

Crotalaria juncea L. enhances the bioremediation of sulfentrazone-contaminated soil and promotes changes in the soil bacterial community.

Sulfentrazone (STZ) is an efficient tool for the pre- and post-emergence control of monocotyledonous and dicotyledonous weeds in fields of crops such as pineapple, coffee, sugarcane, citrus, eucalyptus, tobacco, and soybean. However, this herbicide persists in the soil, causing phytotoxicity in the subsequent crop. Therefore, it is important to use efficient strategies for the remediation of STZ-contaminated areas. The aim of this study was to evaluate the effects of Crotalaria juncea L. on the remediation of STZ-contaminated soil and on the microbial activity and bacterial community structure therein. The study was conducted in three stages: (i) cultivation of C. juncea in soil contaminated with 200, 400, and 800 g ha-1 STZ; (ii) determination of the soil microbial activity (basal respiration, microbial biomass carbon, and bacterial community structure); and (iii) cultivation of a bioindicator species and determination of the residual fraction of STZ. The soil microbial activity was impacted by the soil type and STZ dose. Soil previously cultivated with C. juncea (rhizospheric soil) displayed higher CO2 and lower qCO2 values than non-rhizospheric soil (no previous C. juncea cultivation). Increasing doses of STZ reduced the activity and lowered the diversity indices of the soil microorganisms. The bacterial community structure was segregated between the rhizospheric and non-rhizospheric soils. Regardless of soil type, the bioindicator of remediation (Pennisetum glaucum R.Br.) grew only at the STZ dose of 200 g ha-1, and the plant intoxication level was also lower in rhizospheric soil treated with this herbicide dose. All P. glaucum plants died in the soils treated with 400 and 800 g ha-1 STZ. Previous cultivation of C. juncea in soils contaminated with 200, 400, and 800 g ha-1 STZ reduced the residual fraction of the herbicide by 4.8%, 12.5%, and 17.4%, respectively, compared with that in the non-rhizospheric soils. In conclusion, previous cultivation with C. juncea promoted increases in the soil bacterial activity and diversity indices, mitigated the deleterious effects of STZ on the bioindicator crop, and reduced the residual fraction of the herbicide in the soil.

Effects of N and P addition on nutrient and stoichiometry of rhizosphere and non-rhizosphere soils of alfalfa in alkaline soil

Nitrogen (N) and phosphorus (P) are important nutrients for plant growth and development. Soil alkalization is one of the main obstacles limiting the sustainable development of agriculture. Northern Ningxia is located in the arid and semi-arid region, with serious soil alkalinization. Alfalfa has the advantages of strong saline-alkali tolerance, high yield, high quality, and wide adaptability. It is an important forage for the comprehensive improvement and rational utilization of saline-alkali land and has great significance for solving land resource shortages, improving the ecological environment, and ensuring food security. It is important to study soil organic carbon (SOC), total N (TN), total P (TP), and stoichiometry of the rhizosphere and non-rhizosphere of alfalfa in alkaline soils. Therefore, N and P were added to the alkaline alfalfa field in the Yinchuan Plain of Hetao Basin in our experiment. Six treatments were set up, i.e., N-free (WN), medium N (MN) for 90 kg/hm2, high N (HN) for 180 kg/hm2, P-free (WP), medium P (MP) for 135 kg/hm2, and high P (HP) for 270 kg/hm2. The results are as follows: The N addition promotes SOC and TN but inhibits TP, and P addition promotes SOC and TP but inhibits TN of three soil layers. The N addition decreases C/N but increases C/P and N/P, while the P addition increases C/N but decreases C/P and N/P of three soil layers. The SOC, TN, TP, C/N, C/P, and N/P under HN and HP treatment reach the significance level (P < 0.05). Appropriate additions of N and P can improve rhizosphere and non-rhizosphere nutrients and stoichiometric structure, facilitating absorption and utilization by alfalfa and improve the production potential of alfalfa in alkaline soil.

How the right evolved partners in Cycads and Legumes drive enhanced growth in a harsh environment

Cycads are ancient plants that establish symbiotic associations with plant growth-promoting (PGP) microbes. These ancient associations are rarely contrasted with more recent associations involving PGP microbes and legumes. This study investigated if Vigna unguiculata growing in Encephalartos villosus rhizosphere and non-rhizosphere soils shares similar symbionts with E. villosus and if there is any sanction by plants towards certain soil bacteria. Also, the biomass accumulation and plant nutrition of V. unguiculata growing in these soils was investigated. Vigna unguiculata seeds were grown in E. villosus rhizosphere and non-rhizosphere soils. Thereafter, growth characteristics and plant nutrition were analyzed. Vigna unguiculata plants grown in E. villosus rhizosphere and non-rhizosphere soils were nodulated by Paenibacillus, Bacillus, Peribacillus, Brevibacillus, Alkalihalobacillus, and Lysinibacillus species identified in E. villosus coralloid roots. Bacteria isolated from nodules and coralloid roots were phylogenetically close, regardless of the soil from which these bacteria came. That supports the filter theory by which specific environmental conditions select certain microbial groups to establish symbiotic interactions with plants. No significant differences were observed in the total plant biomass, however, V. unguiculata plants grown in rhizosphere and non-rhizosphere soils invested significantly more resources in belowground biomass that could be related to the extra nitrogen coming from the biological nitrogen fixation that is devoted to roots. This study shows that V. unguiculata and E. villosus growing in similar soil conditions may share the same symbionts promoting plant nutrient assimilation and growth, this opens an idea of a common evolution of the two species and their symbionts.

Effects of grazing intensity on diversity and composition of rhizosphere and non-rhizosphere microbial communities in a desert grassland.

Overgrazing-induced grassland degradation has become a serious ecological problem worldwide. The diversity and composition of soil microbial communities are sensitive to grazing disturbances. However, our understanding is limited with respect to the effects of grazing intensity on bacterial and fungal communities, especially in plant rhizosphere. Using a long-term grazing experiment, we evaluated the diversity and composition of microbial communities in both rhizosphere and non-rhizosphere soils under three grazing intensities (light, moderate, and heavy grazing) in a desert grassland and examined the relative roles of grazing-induced changes in some abiotic and biotic factors in affecting the diversity and composition of microbial communities. Our results showed that soil bacteria differed greatly in diversity and composition between rhizosphere and non-rhizosphere zones, and so did soil fungi. Moderate and heavy grazing significantly reduced the rhizosphere bacterial diversity. Grazing intensity substantially altered the bacterial composition and the fungal composition in both zones but with different mechanisms. While root nitrogen and soil nitrogen played an important role in shaping the rhizosphere bacterial composition, soil-available phosphorus greatly affected the non-rhizosphere bacterial composition and the fungal composition in both soils. This study provides direct experimental evidence that the diversity and composition of microbial communities were severely altered by heavy grazing on a desert grassland. Thus, to restore the grazing-induced, degraded grasslands, we should pay more attention to the conservation of soil microbes in addition to vegetation recovery.

The response of roots and the rhizosphere environment to integrative cultivation practices in paddy rice

Integrative cultivation practices (ICPs) are essential for enhancing cereal yield and resource use efficiency. However, the effects of ICP on the rhizosphere environment and roots of paddy rice are still poorly understood. In this study, four rice varieties were produced in the field. Each variety was treated with six different cultivation techniques, including zero nitrogen application (0 N), local farmers’ practice (LFP), nitrogen reduction (NR), and three progressive ICP techniques comprised of enhanced fertilizer N practice and increased plant density (ICP1), a treatment similar to ICP1 but with alternate wetting and moderate drying instead of continuous flooding (ICP2), and the same practices as ICP2 with the application of organic fertilizer (ICP3). The ICPs had greater grain production and nitrogen use efficiency than the other three methods. Root length, dry weight, root diameter, activity of root oxidation, root bleeding rate, zeatin and zeatin riboside compositions, and total organic acids in root exudates were elevated with the introduction of the successive cultivation practices. ICPs enhanced nitrate nitrogen, the activities of urease and invertase, and the diversity of microbes (bacteria) in rhizosphere and non-rhizosphere soil, while reducing the ammonium nitrogen content. The nutrient contents (ammonium nitrogen, total nitrogen, total potassium, total phosphorus, nitrate, and available phosphorus) and urease activity in rhizosphere soil were reduced in all treatments in comparison with the non-rhizosphere soil, but the invertase activity and bacterial diversity were greater. The main root morphology and physiology, and the ammonium nitrogen contents in rhizosphere soil at the primary stages were closely correlated with grain yield and internal nitrogen use efficiency. These findings suggest that the coordinated enhancement of the root system and the environment of the rhizosphere under integrative cultivation approaches may lead to higher rice production.