A novel organic crystal bis(guanidininium) n-carboxylatephenylalanine (GUPA) was synthesized and X-ray diffraction outcomes exposed P21, triclinic space group with cell dimensions a = 6.6492(3) Å, b = 16.2440(7) Å, c = 7.8985(3) Å, β = 0.127(2) °, V = 853.11(6) Å3, Z = 2 and possess good agreement with experimental data. Intermolecular interactions were revealed through hirshfeld and major contribution from O-H interaction confirms the presence of intermolecular hydrogen bonds. Through B3LYP algorithm with set 6–311++ G (d, p), chemical reactivity forms and molecular structure of GUPA was investigated, confirming a good stability and hard electrophilic nature. While first order hyperpolarizability value (35.37 × 10−31 esu) was indicative of good nonlinear optical material and hyperconjugate interactions and charge delocalization was further confirmed by natural bond orbitals. To further investigate the electronic properties theoretical (TD-DFT) and experimental absorption wavelengths were compared and excitation energies, oscillator strength and type of electronic transition with contributions have also been studied. The topological properties were evaluated using ELF/LOL maps and RDG with NCI were used to establish the type of interaction present in the GUPA molecular system. The anti-breast cancer effect of GUPA was computationally studied through molecular docking against p53 gene and was further investigated through in vitro MDA-MB-231 cell line studies and GUPA showed better inhibition of cancer cells and their expression.
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