Dynamical property of harmonic oscillator affected by linearized gravitational wave (LGW) is studied in a particular case of both position and momentum operators which are noncommutative to each other. By using the generalized Bopp’s shift, we, at first, derived the Hamiltonian in the noncommutative phase space (NPS) and, then, calculated the time evolution of coordinate and momentum operators in the Heisenberg representation. Tiny vibration of flat Minkowski space and effect of NPS let the Hamiltonian of harmonic oscillator, moving in the plain, get new extra terms from it’s original and noncommutative space partner. At the end, for simplicity, we take the general form of the LGW into gravitational plain wave, obtain the explicit expression of coordinate and momentum operators.