Abstract To achieve the decarbonization of electrical power generation, gas turbines need to be upgraded to combust high-hydrogen content fuels reliably. One of the main challenges in this upgrade is the burner design. A promising burner concept for a high-hydrogen fuel mixture are jet burners, which are highly flashback resistant thanks to their high bulk velocity. Due to its nonacoustically compact extension and the presence of hydrogen in the fuel mixture, new challenges arise in assessing the (thermo)acoustic response of this burner design. A burner transfer matrix (BTM) and the flame transfer function (FTF) or transfer matrix (FTM) are typically measured with the multimicrophone method (MMM) to assess the performance of new burner types in relation to thermoacoustic stability. With the switch toward hydrogen, the fuel/air mixture is significantly altered in its properties regarding the speed of sound and density, which are of fundamental importance for acoustic waves propagation and their reconstruction via the MMM, as highlighted in recent work. In this work, we extend this discussion by studying the influence of the gas composition within the burner when measuring BTMs, and its indirect effect on the assessment of FTFs. Experimentally, we achieve this by adapting the preheating temperature during the measurement of the BTM with a nonreactive mixture in order to match the speed of sound of the hydrogen–air mixture required to flow in the burner under reactive conditions. Additionally, we present an analytical model for the jet burner transfer matrix, which is validated against the experimental data. Since the BTM is fundamental for the assessment of the FTM and FTF, the propagation of the error of changing fuel mixtures in the burner is evaluated. The influence of the variation in reactant composition of the BTM on the FTM assessment is noticeable, particularly in the gain of the FTFs. Furthermore, the influence of the total mass flow and, thus, the bulk flow velocity on the FTF is analyzed.