Non-overlapping Distributions Research Articles

Brain structural damage networks at different stages of schizophrenia.

Neuroimaging studies have documented brain structural changes in schizophrenia at different stages of the illness, including clinical high-risk (cHR), genetic high-risk (gHR), first-episode schizophrenia (FES), and chronic schizophrenia (ChS). There is growing awareness that neuropathological processes associated with a disease fail to map to a specific brain region but do map to a specific brain network. We sought to investigate brain structural damage networks across different stages of schizophrenia. We initially identified gray matter alterations in 523 cHR, 855 gHR, 2162 FES, and 2640 ChS individuals relative to 6963 healthy controls. By applying novel functional connectivity network mapping to large-scale discovery and validation resting-state functional magnetic resonance imaging datasets, we mapped these affected brain locations to four specific networks. Brain structural damage networks of cHR and gHR had limited and non-overlapping spatial distributions, with the former mainly involving the frontoparietal network and the latter principally implicating the subcortical network, indicative of distinct neuropathological mechanisms underlying cHR and gHR. By contrast, brain structural damage networks of FES and ChS manifested as similar patterns of widespread brain areas predominantly involving the somatomotor, ventral attention, and subcortical networks, suggesting an emergence of more prominent brain structural abnormalities with illness onset that have trait-like stability over time. Our findings may not only provide a refined picture of schizophrenia neuropathology from a network perspective, but also potentially contribute to more targeted and effective intervention strategies for individuals at different schizophrenia stages.

The Electroencephalogram (EEG) Study for Estimating Endurance Sports Performance Base on Eigenvalues Extraction Method.

Brain-behavior connections are a new means to evaluate sports performance. This electroencephalogram (EEG) study aims to estimate endurance exercise performance by investigating eigenvalue trends and comparing their sensitivity and linearity. Twenty-three cross-country skiers completed endurance cycling tasks. Twenty-four-channel full-brain EEG signals were recorded in the motor phase and recovery phase continuously. Eighteen EEG eigenvalues calculation methods were collected, commonly used in previous research. Time-frequency, band power, and nonlinear analyses were used to calculate the EEG eigenvalues. Their regression coefficients and correlation coefficients were calculated and compared, with the linear regression method. The time-frequency eigenvalues shift slightly throughout the test. The power eigenvalues changed significantly before and after motor and recovery, but the linearity was not satisfactory. The sensitivity and linearity of the nonlinear eigenvalues were stronger than the other eigenvalues. Of all eigenvalues, Shannon entropy showed completely non-overlapping distribution intervals in the regression coefficients of the two phases, which were -0.1474 ± 0.0806 s-1 in the motor phase and 0.2560 ± 0.1365 s-1 in the recovery phase. Shannon entropy amplitude decreased more in the F region of the brain than in the other regions. Additionally, the higher the level of sport, the slower the decline in Shannon entropy of the athlete. The Shannon entropy method provided more accurate estimations for endurance exercise performance compared to other eigenvalues.

Abstract 4114625: Upregulation of Palmitoylating Enzymes, DHHC2 and DHHC5, in Failing Human Hearts Protects Impulse Propagation but Endangers Myocyte Survival after Ischemia/Reperfusion (I/R) Injury

Background: Palmitoylation 'Palm* catalyzed by DHHC enzymes promotes protein binding to membranes, impacting protein translocation and function. Palm* dysregulation has been linked to cancers and neurogenerative disorders; its impact on cardiac function is unclear. We have used global purification of palmitoylated proteins from human and animal hearts followed by proteomic analysis to build 'cardiac palmitoylome', whose 454 constituents are involved in organizing/stabilizing cardiomyocyte microdomains (intercalated discs 'ICD', dyads, and costameres) critical for myocyte functions/homeostasis. We confirmed 11 of the 23 DHHC genes are expressed in human&animal hearts. In particular, DHHC2 and DHHC5 were upregulated in human failing hearts. DHHC enzymes are membrane-embedded, limiting their substrates to enzymes' 'territories' in cells. Objective: To identify DHHC2 and DHHC5 distribution patterns and substrates in myocytes, and to understand how upregulation of DHHC2 or DHHC5 affects myocyte function. Methods: Track adenovirus-expressed mCherry-DHHC2 and -DHHC5 (mChr-DHHCx, x=2 or 5, Adv-mChr as control) in ventricular myocytes from adult Sprague-Dawley rats. Globally purify palmitoylated proteins for proteomic analysis/quantification. Use high-resolution quantitative imaging to analyze how mChr-DHHCx affects myocyte response to ischemia/reperfusion (I/R) injury and the expression/organization of palmitoylated proteins at ICD and lateral surface. Results: mChr-DHHC2 is mainly present in cytoplasmic vesicles bearing markers of recycling or autophagy, with a minor presence along lateral surface, dyads, and ICD. mChr-DHHC5 is mainly present along the lateral surface, dyads and ICD, with a minor presence in small endosomal vesicles. Palmitoylome normalized by proteome identifies DHHC2 and DHHC5 substrates that overlap with cardiac palmitoylome, and match the enzymes' distribution patterns. I/R injury increases endocytosis in myocytes, quantified by uptake of plasma-membrane marker, wheat germ agglutinin. I/R-induced endocytosis is exacerbated by mChr-DHHC2 but, surprising, alleviated by mChr-DHHC5. mChr-DHHC2 and -DHHC5 increase internalization of ICD and lateral membrane proteins, n-cadherin and NCX1 respectively. Conclusions: DHHC2 and DHHC5 have non-overlapping distribution patterns, consistent with varying substrate groups. DHHC2, but not DHHC5, appears involved in the previously reported palm*-dependent massive endocytosis in I/R-stressed cardiomyocytes.

Predation-driven geographical isolation of broods in periodical cicadas

Periodical cicadas are remarkable for their incredibly long, prime-numbered life cycles and almost perfectly synchronized mass emergence. Synchronized emergence is a generally localized event, referred to as a “brood”. Broods are separated in space and time, or parapatric; adjacent broods emerge on different schedules, whereas some cicadas emerge off schedule, called stragglers. Straggling can potentially erode brood boundaries; thus, the mechanism allowing broods to maintain nonoverlapping distributions is highly puzzling. Here, we propose that predation may allow broods to exclude each other. Our model and numerical simulations show that predation could act as an important factor for maintaining the nonoverlapping distributions. The proposed mechanism is most effective in the vicinity of the critical strength of predation, beyond which the population is doomed to extinction. An increase in predation intensity increases resistance to settlement of a minority brood, while suppressing the main brood population.

Toward the measurement of neutrino masses: Performance of cosmic magnification with submillimeter galaxies

Context. The phenomenon of magnification bias can induce a non-negligible angular correlation between two samples of galaxies with nonoverlapping redshift distributions. This signal is particularly clear when background submillimeter galaxies are used, and has been shown to constitute an independent cosmological probe. Aims. This work extends prior studies on the submillimeter galaxy magnification bias to the massive neutrino scenario, with the aim being to assess its sensitivity as a cosmological observable to the sum of neutrino masses. Methods. The measurements of the angular cross-correlation function between moderate redshift GAMA galaxies and high-redshift submillimeter H-ATLAS galaxies are fit to the weak lensing prediction down to the arcmin scale. The signal is interpreted under the halo model, which is modified to accommodate massive neutrinos. We discuss the impact of the choice of cosmological parametrization on the sensitivity to neutrino masses. Results. The currently available data on the magnification bias affecting submillimeter galaxies are sensitive to neutrino masses when a cosmological parametrization in terms of the primordial amplitude of the power spectrum (As) is chosen over the local root mean square of smoothed linear density perturbations (σ8). A clear upper limit on the sum of neutrino masses can be derived if the value of As is either fixed or assigned a narrow Gaussian prior, a behavior that is robust against changes to the chosen value.

Multi-plane imaging based on cascade spintronic terahertz emitters with curved substrates.

As a novel terahertz (THz) source, a spintronic THz emitter (STE) has become a research hot topic recently due to its ultra-broadband emission, powerful scalability, simple fabrication, and ultrawide pump-wavelength range. To optimize the performance of a STE, its spintronic heterostructure has been extensively investigated and its accessories have been also appropriately improved. In this work, a curved substrate of a STE was proposed and utilized to achieve the modulation of the THz wave front as a new degree of freedom. A STE with a neutral-meniscus substrate was designed and fabricated to attain the focusing function of the emitted THz radiation. Coaxial THz bi-focus with a non-overlapping spatio-temporal distribution were effectively generated and applied in multi-plane imaging by properly using two cascade STEs. Amplitude- and phase-type objects consisting of bilayer structures were measured by the scheme. The focused and defocused regions of the samples were distinguished and analyzed on different cross sections. Furthermore, a STE with a spiral stair substrate was manufactured in this way and the generation of a THz vortex beam was fulfilled. The convenient approach offered more possibilities for developing THz optospintronic devices.

No-Reference Hyperspectral Image Quality Assessment via Ranking Feature Learning

In hyperspectral image (HSI) reconstruction tasks, due to the lack of ground truth in real imaging processes, models are usually trained and validated on simulation datasets and then tested on real measurements captured by real HSI imaging systems. However, due to the gap between the simulation imaging process and the real imaging process, the best model validated on the simulation dataset may fail on real measurements. To obtain the best model for the real-world task, it is crucial to design a suitable no-reference HSI quality assessment metric to reflect the reconstruction performance of different models. In this paper, we propose a novel no-reference HSI quality assessment metric via ranking feature learning (R-NHSIQA), which calculates the Wasserstein distance between the distribution of the deep features of the reconstructed HSIs and the benchmark distribution. Additionally, by introducing the spectral self-attention mechanism, we propose a Spectral Transformer (S-Transformer) to extract the spatial-spectral representative deep features of HSIs. Furthermore, to extract quality-sensitive deep features, we use quality ranking as a pre-training task to enhance the representation capability of the S-Transformer. Finally, we introduce the Wasserstein distance to measure the distance between the distribution of the deep features and the benchmark distribution, improving the assessment capacity of our method, even with non-overlapping distributions. The experimental results demonstrate that the proposed metric yields consistent results with multiple full-reference image quality assessment (FR-IQA) metrics, validating the idea that the proposed metric can serve as a substitute for FR-IQA metrics in real-world tasks.

Optimization Design of Variable Reluctance Resolver Based on Three-phase Symmetrical Winding

Optimization Design of Variable Reluctance Resolver Based on Three-phase Symmetrical Winding

Three systems of molecular markers reveal genetic differences between varieties sabina and balkanensis in the Juniperus sabina L. range

Key messageJ. sabina var. balkanensis, that is of hybrid origin, and its maternal progenitor J. sabina var. sabina are genetically distinct with respect to cpDNA, SNP, and SilicoDArT loci. Mostly non-overlapping distributions of the sabina and balkanensis varieties are the result of their different climatic requirements.ContextJuniperus sabina L. is present in the Eurasian mountains, but its range is severely fragmented. In Europe, two varieties of J. sabina occur: var. sabina and var. balkanensis, the latter being an allotetraploid hybrid between the diploid var. sabina and a tetraploid ancestor of Juniperus thurifera L. The distribution of the two varieties is mostly disjunct.AimsAssess the taxonomic affiliation and genetic differentiation of the populations of var. sabina and var. balkanensis in Europe and Asia using cpDNA, SilicoDArT, and SNP markers. Identify climatic niches of both juniper varieties in Europe.MethodsAltogether, 21,134 SilicoDArT, 8,579 SNP, and four cpDNA loci were used. Seven climatic variables were compared in sites inhabited by var. balkanensis and the two parental species.ResultsThe SilicoDArTs and SNPs revealed a pattern of population differentiation that was congruent with the cpDNA analysis. The hybrid var. balkanensis occupies habitats with higher temperatures and intermediate levels of precipitation compared to both parental taxa.ConclusionThe low genetic variation and significant genetic differentiation among J. sabina populations likely result from the restriction of gene flow imposed by the mountain ranges. The balkanensis variety is able to cope with hot and dry climates probably thanks to the admixture of J. thurifera genes.

Association between body mass index (BMI) and [123I]Ioflupane (DaTSCAN) availabilities in patients with parkinsonism using single-photon emission computed tomography–computed tomography (SPECT-CT)

Aim[123I]Ioflupane (DaTSCAN) has a high binding affinity to the dopamine (DA) transporter (DaT) and tenfold less affinity to serotonin (5-HT) transporter (SERT). Both neurotransmitters are considered to contribute to body weight regulation. This study assesses the association between body mass index (BMI) and DaTSCAN availability in brain.MethodScans from 74 consecutive patients who had undergone DaTSCAN single-photon emission computed tomography–computed tomography (SPECT-CT) were used to obtain semi- and absolute quantitative data in several volumes of interest (VOIs). Relative semi-quantitative specific binding ratios (SBRs) from Chang attenuated SPECT were obtained from GE DaTQUANT. Absolute normalised concentration (NC) was calculated from attenuation/scatter corrected SPECT-CT images, using an adapted version of the EARL Ltd (European Association of Nuclear Medicine (EANM) Research 4 Life) template. Scans were subdivided into either degenerative parkinsonism (abnormal = 49), borderline (n = 14) or scan without evidence of dopaminergic deficit (SWEDD = 11) using visual assessment and SBR values by two nuclear medicine consultants.ResultsSBRs did not correlate with BMI. However, NC values correlated negatively in the entire cohort, with the strongest correlation in the frontal (r = − 0.649. p = 0.000), occipital (r = − 0.555, p = 0.000) regions and pons (r = − 0.555, p = 0.000). In the abnormal (n = 49) and SWEDD group (n = 11), NC of the frontal region was the most correlated with BMI (r = − 0.570, p = 0.000; r = − 0.813, p = 0.002, respectively). In the borderline group (n = 14), the left posterior putamen displayed the strongest correlation (r = − 0.765, p = 0.001).ConclusionAbsolute NC values demonstrate a strong inverse correlation with BMI, strongest in the extrastriatal regions. Due to the predominately non-overlapping distribution of DaT and SERT, this study suggests greater involvement of SERT in obesity with possible interplay with DA transmission.

Consequences of cross-season demographic correlations for population viability.

Demographic correlations are pervasive in wildlife populations and can represent important secondary drivers of population growth. Empirical evidence suggests that correlations are in general positive for long-lived species, but little is known about the degree of variation among spatially segregated populations of the same species in relation to environmental conditions. We assessed the relative importance of two cross-season correlations in survival and productivity, for three Atlantic puffin (Fratercula arctica) populations with contrasting population trajectories and non-overlapping year-round distributions. The two correlations reflected either a relationship between adult survival prior to breeding on productivity, or a relationship between productivity and adult survival the subsequent year. Demographic rates and their correlations were estimated with an integrated population model, and their respective contributions to variation in population growth were calculated using a transient-life table response experiment. For all three populations, demographic correlations were positive at both time lags, although their strength differed. Given the different year-round distributions of these populations, this variation in the strength population-level demographic correlations points to environmental conditions as an important driver of demographic variation through life-history constraints. Consequently, the contributions of variances and correlations in demographic rates to population growth rates differed among puffin populations, which has implications for-particularly small-populations' viability under environmental change as positive correlations tend to reduce the stochastic population growth rate.

Double Image Encryption System Using a Nonlinear Joint Transform Correlator in the Fourier Domain.

In this work, we present a new nonlinear joint transform correlator (JTC) architecture in the Fourier domain (FD) for the encryption and decryption of two simultaneous images. The main features of the proposed system are its increased level of security, the obtention of a single real-valued encrypted signal that contains the ciphered information of the two primary images and, additionally, a high image quality for the two final decrypted signals. The two images to be encrypted can be either related to each other, or independent signals. The encryption system is based on the double random phase encoding (DRPE), which is implemented by using a nonlinear JTC in the FD. The input plane of the JTC has four non-overlapping data distributions placed side-by-side with no blank spaces between them. The four data distributions are phase-only functions defined by the two images to encrypt and four random phase masks (RPMs). The joint power spectrum (JPS) is produced by the intensity of the Fourier transform (FT) of the input plane of the JTC. One of the main novelties of the proposal consists of the determination of the appropriate two nonlinear operations that modify the JPS distribution with a twofold purpose: to obtain a single real-valued encrypted image with a high level of security and to improve the quality of the decrypted images. The security keys of the encryption system are represented by the four RPMs, which are all necessary for a satisfactory decryption. The decryption system is implemented using a 4f-processor where the encrypted image and the security keys given by the four RPMs are introduced in the proper plane of the processor. The double image encryption system based on a nonlinear JTC in the FD increases the security of the system because there is a larger key space, and we can simultaneously validate two independent information signals (original images to encrypt) in comparison to previous similar proposals. The feasibility and performance of the proposed double image encryption and decryption system based on a nonlinear JTC are validated through computational simulations. Finally, we additionally comment on the proposed security system resistance against different attacks based on brute force, plaintext and deep learning.

Taxonomic review of Saguinus mystax (Spix, 1823) (Primates, Callitrichidae), and description of a new species.

Although the Amazon has the greatest diversity of primates, there are still taxonomic uncertainties for many taxa, such as the species of the Saguinus mystax group. The most geographically broadly distributed and phenotypically diverse species in this group is S. mystax, and its phenotypic diversity has been recognized as three subspecies-S. mystax mystax, S. mystax pileatus and S. mystax pluto-with non-overlapping geographic distributions. In this sense, we carried out an extensive field survey in their distribution areas and used a framework of taxonomic hypothesis testing of genomic data combined with an integrative taxonomic decision-making framework to carry out a taxonomic revision of S. mystax. Our tests supported the existence of three lineages/species. The first species corresponds to Saguinus mystax mystax from the left bank of the Juruá River, which was raised to the species level, and we also discovered and described animals from the Juruá-Tefé interfluve previously attributed to S. mystax mystax as a new species. The subspecies S. m. pileatus and S. m. pluto are recognized as a single species, under a new nomenclatural combination. However, given their phenotypic distinction and allopatric distribution, they potentially are a manifestation of an early stage of speciation, and therefore we maintain their subspecific designations.

The Phylogenetic Limits to Diversity-Dependent Diversification.

While the theory of micro-evolution by natural selection assigns a crucial role to competition, its role in macroevolution is less clear. Phylogenetic evidence for a decelerating accumulation of lineages suggests a feedback of lineage diversity on diversification. However, does this feedback only occur between close relatives, or do distant relatives also influence each other's diversification? In other words: are there phylogenetic limits to this diversity-dependence? Islands form ideal systems to answer these questions because their boundedness facilitates an overview of all potential competitors. The DAISIE (Dynamic Assembly of Island biota through Speciation Immigration and Extinction) framework allows for testing the presence of diversity-dependence on islands given phylogenetic data on colonization and branching times. The current inference models in DAISIE assume that this diversity-dependence only applies within a colonizing clade, i.e., all mainland species can colonize and diversify independently from one another. We term this clade-specific (CS) diversity-dependence. Here we introduce a new DAISIE model that assumes that diversity-dependence applies to all island species of a taxonomic group regardless of their mainland ancestry, i.e., diversity-dependence applies both to species within the same clade and between different clades established by different mainland species. We call this island-wide (IW) diversity-dependence. We present a method to compute a likelihood for this model given phylogenetic data on colonization and branching events and use likelihood ratio bootstrapping to compare it to the likelihood of the CS model in order to overcome biases known for standard model selection. We apply it to the diversification of Eleutherodactylus frogs on Hispaniola. Across the Greater Antilles archipelago, this radiation shows repeated patterns of diversification in ecotypes that are similar across clades. This could be suggestive of overlapping niche space and hence between-clade interactions, i.e., IW diversity-dependence. But it could also be suggestive of only within-clade interactions because between-clade interactions would have blocked the same ecotype from re-appearing. We find that the CS model fits the data much better than the IW model, indicating that different colonizations while resulting in similar ecotypes, are sufficiently distinct to avoid interacting strongly. We argue that non-overlapping distributions between clades (both spatially and in terms of ecotypes) cannot be used as evidence of CS diversity-dependence, because this pattern may be a consequence of IW diversity-dependence. By contrast, by using phylogenetic data rather than distributional data our method does allow for inferring the phylogenetic limits to diversity-dependent diversification. We discuss possibilities for future extensions and applications of our modelling approach. [Adaptive radiation; birth-death model; Caribbean; diversity-dependence; Eleutherodactylus; island biogeography.].

Biodiversity cradles and museums segregating within hotspots of endemism.

The immense concentrations of vertebrate species in tropical mountains remain a prominent but unexplained pattern in biogeography. A long-standing hypothesis suggests that montane biodiversity hotspots result from endemic species aggregating within ecologically stable localities. Here, the persistence of ancient lineages coincides with frequent speciation events, making such areas both 'cradles' (where new species arise) and 'museums' (where old species survive). Although this hypothesis refers to processes operating at the scale of valleys, it remains supported primarily by patterns generated from coarse-scale distribution data. Using high-resolution occurrence and phylogenetic data on Andean hummingbirds, we find that old and young endemic species are not spatially aggregated. The young endemic species tend to have non-overlapping distributions scattered along the Andean treeline, a long and narrow habitat where populations easily become fragmented. By contrast, the old endemic species have more aggregated distributions, but mainly within pockets of cloud forests at lower elevations than the young endemic species. These findings contradict the premise that biogeographical cradles and museums should overlap in valley systems where pockets of stable climate persist through periods of climate change. Instead, Andean biodiversity hotspots may derive from large-scale fluctuating climate complexity in conjunction with local-scale variability in available area and habitat connectivity.

Systematics of the Central African Spiny Reed Frog Afrixalus laevis (Anura: Hyperoliidae), with the description of two new species from the Albertine Rift.

The geographically widespread species Afrixalus laevis (Anura: Hyperoliidae) currently has a disjunct distribution in western Central Africa (Cameroon, Equatorial Guinea, Gabon, and possibly adjacent countries) and the area in and near the Albertine Rift in eastern Democratic Republic of the Congo and neighboring countries. At least two herpetologists have previously suggested that these disjunct populations represent distinct species, and herein, we utilize an integrative taxonomic approach with molecular and morphological data to reconcile the taxonomy of these spiny reed frogs. We sequenced 1554 base pairs of the 16S and RAG1 genes from 34 samples of A. laevis and one sample of A. orophilus (sympatric with eastern populations of A. laevis), and combined these data with previously sequenced GenBank Afrixalus samples via the bioinformatics toolkit SuperCRUNCH. Phylogenetic trees, dated phylogenetic analyses, and species-delimitation analyses were generated with RAxML, BEAST, and BPP, respectively. Eleven mensural characters were taken from multiple specimens of A. laevis and A. orophilus, and compared with paired t-tests and analyses of covariance. These combined results suggested populations of A. laevis in western Central Africa (Cameroon and Bioko Island, Equatorial Guinea) represent one species, whereas populations from the Albertine Rift and nearby forests represent two undescribed taxa that are sister to A. dorsimaculatus. The two new species (A. lacustris sp. nov. and A. phantasma sp. nov.) are distinguished by our phylogenetic and species-delimitation analyses, significant differences in several mensural characters, qualitative morphological differences, and by their non-overlapping elevational distribution.

Two new species of Hemidactylus Goldfuss, 1820 (Squamata: Gekkonidae) from the rocky outcrops of the Deccan plateau, peninsular India

The gekkonid diversity of the under-explored dry zones in Peninsular India is not yet completely inventoried, as evidenced by frequent new species descriptions. Here, we describe two new species of Hemidactylus from the dry rocky zones of Deccan Plateau viz. Hemidactylus mahonyi sp. nov. from Sandur Hills and Hemidactylus srikanthani sp. nov. from Devarayana Durga Hills, Karnataka State of Peninsular India. The new species belong to the morphologically cryptic H. murrayi Clade but differ from each other and the known congeners by a set of morphological characters and possess non-overlapping distribution ranges. Furthermore, the new species are also divergent (> 6.4% uncorrected p-distance) from their nearest related congeners, and from one another with respect to the ND2 mitochondrial gene. Recently, other new species of reptiles have been described from the two aforesaid type localities, indicating that further bio-inventories in the dry zones of peninsular India will yield more such novelties.

Genome Skimming Contributes to Clarifying Species Limits in Paris Section Axiparis (Melanthiaceae).

Paris L. section Axiparis H. Li (Melanthiaceae) is a taxonomically perplexing taxon with considerable confusion regarding species delimitation. Based on the analyses of morphology and geographic distribution of each species currently recognized in the taxon, we propose a revision scheme that reduces the number of species in P. sect. Axiparis from nine to two. To verify this taxonomic proposal, we employed a genome skimming approach to recover the plastid genomes (plastomes) and nuclear ribosomal DNA (nrDNA) regions of 51 individual plants across the nine described species of P. sect. Axiparis by sampling multiple accessions per species. The species boundaries within P. sect. Axiparis were explored using phylogenetic inference and three different sequence-based species delimitation methods (ABGD, mPTP, and SDP). The mutually reinforcing results indicate that there are two species-level taxonomic units in P. sect. Axiparis (Paris forrestii s.l. and P. vaniotii s.l.) that exhibit morphological uniqueness, non-overlapping distribution, genetic distinctiveness, and potential reproductive isolation, providing strong support to the proposed species delimitation scheme. This study confirms that previous morphology-based taxonomy overemphasized intraspecific and minor morphological differences to delineate species boundaries, therefore resulting in an overestimation of the true species diversity of P. sect. Axiparis. The findings clarify species limits and will facilitate robust taxonomic revision in P. sect. Axiparis.

Comparative genomics and signatures of selection in North Atlantic eels.

Comparative genomic approaches can identify putative private and shared signatures of selection. We performed a comparative genomic study of North Atlantic eels, European eel (Anguilla Anguilla) and American eel (A. rostrata). The two sister species are nearly undistinguishable at the phenotypic level and despite a wide non-overlapping continental distribution, they spawn in partial sympatry in the Sargasso Sea. Taking advantage of the newly assembled and annotated genome, we used genome wide RAD sequencing data of 359 individuals retrieved from Sequence Nucleotide Archive and state-of-the-art statistic tests to identify putative genomic signatures of selection in North Atlantic eels. First, using the FST and XP-EHH methods, we detected apparent islands of divergence on a total of 7 chromosomes, particularly on chromosomes 6 and 10. Gene ontology analyses suggested candidate genes mainly related to energy production, development and regulation, which could reflect strong selection on traits related to eel migration and larval duration time. Gene effect prediction using SNPeff showed a high number of SNPs in noncoding regions, pointing to a possible regulatory role. Second, using the iHS method we detected shared regions under selection on a total of 11 chromosomes. Several hypotheses might account for the detection of shared islands of selection in North Atlantic eels, including parallel evolution due to adaptation to similar environments and introgression. Future comparative genomic studies will be needed to further clarify the causes and consequences of introgression, including the directionality of these introgression events.

Morphometric analysis provides evidence for two traditionally defined species of the Tillandsia erubescens complex (Bromeliaceae)

Background and aims – A linear morphometric analysis of three taxa of the Tillandsia erubescens complex, composed of T. erubescens var. arroyoensis, T. erubescens var. erubescens, and T. erubescens var. patentibracteata, is presented to evaluate their circumscription. Additionally, their taxonomic rank as varieties or species is discussed considering the obtained results. Geographic distribution, the influence of climate, elevation, and geographic distance on morphological differences between the taxonomic entities is explored.Material and methods – Of a total of 110 herbarium specimens reviewed, 44 were measured. These were previously identified as T. erubescens var. arroyoensis, T. erubescens var. erubescens, or T. erubescens var. patentibracteata. Factor and cluster analyses were performed using 16 quantitative morphological characters. The resulting groups were considered as taxonomic entities supported by morphometric characters, and species distributions were plotted against Mexican biogeographic provinces. A single Mantel test was performed to evaluate the correlation between morphology and climatic variables, elevation, and geographic distance.Key results – The specimens referred to as T. erubescens var. arroyoensis were separated morphometrically from the other two varieties. The most important characters to differentiate T. erubescens var. arroyoensis from T. erubescens var. erubescens were total size, width and length of the leaf sheath and leaf blade, and the number of flowers. The non-overlapping geographical distribution of T. erubescens var. arroyoensis and T. erubescens var. erubescens supports their recognition as independent taxonomic entities. Our study did not support the separation between T. erubescens var. erubescens and T. erubescens var. patentibracteata, which is also reflected by their overlapping geographic distributions. Both precipitation and geographic distance were correlated with the morphological differences among the species.Conclusion – Our morphometric and geographical distribution study supports the recognition of T. arroyoensis and T. erubescens as different species, while no evidence was found to maintain T. erubescens var. erubescens and T. erubescens var. patentibracteata as different taxonomic entities. We provide a set of morphological characters that can be used to distinguish between T. arroyoensis and T. erubescens, including the leaf sheath and leaf blade width, and the number of flowers. Morphological characters agree with the geographic distribution of the studied taxa.