ABSTRACT Background To identify alterations in miRNA expression that occur in the early and late stages of lung cancer in smokers and non-smokers, we conducted miRNA profiling analysis. MiRNAs abnormally expressed in lung adenocarcinomas were compared in smokers vs. non-smokers as well as early stage vs. late stage disease. Materials and methods We collected 62 lung adenocarcinoma samples with paired non-neoplastic lung tissue from patients with no pre-operative therapy at Fox Chase Cancer Center and Methodist Hospital. Twenty-five patients had no history of tobacco smoking. The clinical stages were proportionally matched between smokers and non-smokers. MiRNA expression was profiled using the Human miRNA V2 Oligo Microarray Kit (Agilent Technologies, Alto, CA). The human miRNAs were background-subtracted, quantile-normalized in arrays, and log-2 transformed. The differences of mRNAs between tumor and normal tissue were examined using two-factor linear model. We assessed the local false discovery rates (FDRs) for all terms including the intercept using the Bum method (Pounds and Morris, 2003). Results We identified 63 miRNAs with FDR Table 1 . Conclusion Eighty-one percent of the altered miRNAs were observed in both smokers and non-smokers, which suggests a common epigenetic predisposition for lung adenocarcinoma development. Altered miRNAs expressed in early stage lung adenocarcinoma may be used as markers for the early detection of lung cancer. Table 1 . MiRNAs abnormally expressed in lung adenocarcinoma Patient characteristics miRNAs S/N/E/L 126, 130a, 135b, 141, 144, 145, 21, 21*, 200b, 210, 218, 30a, 30a*, 30c, 338-3p, 424, 451, 486-5p, 494, 497, 574-5p, 96, 99a S/N/E 200, 429 N/E/L 34c-5p N/L 135a*, 198 S, smoker; N, non-smoker; E, early stage; L, late stage.
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