This study focuses on free vibration analysis of functionally graded material (FGM) plates supported by Winkler–Pasternak elastic foundation in thermal environment using element-free Galerkin (EFG) meshless method. Plate kinematics depend on first-order shear deformation theory. Uniform, linear, and nonlinear temperature variations through the thickness direction are considered, along with the temperature-dependent material properties. The numerical outcomes obtained from EFG method are compared with those available in the published literature to validate the proposed method’s accuracy. An artificial neural network (ANN) model that can easily predict the natural frequencies of the plate is constructed from the EFG method outcomes. Further, the effect of foundation parameters, power law index, thickness ratio, temperature variations, and different boundary conditions are investigated; results show that these significantly influence the vibration response of FGM plates supported by the elastic foundation. Increasing the temperature of FGM plates supported by the Winkler–Pasternack foundation causes a decrease in the dimensionless fundamental natural frequency, and the uniform temperature influence is greater than that of linear and nonlinear temperature variation. The proposed EFG-ANN prediction model saves approximately 98.80% computation time when predicting the natural frequency with an accuracy of approximately 98.76% compared to that by EFG meshless method alone.