This paper presents a noise-robust damage detection framework for composite structures via a commonly used vibration-based non-destructive testing (NDT) method. Recently, deep learning-based models have shown promising performance in the autonomous damage detection of laminated composites; however, the poor noise robustness of these models has plagued data-driven damage detection. Moreover, none of the existing studies on damage detection in laminated composites focus on noise-robust deep learning models with high generalization ability. Therefore, this study proposes a hybrid deep learning framework called a multi-channel convolutional autoencoder-support vector machine (MC-CAE-SVM) based on empirical mode decomposition (EMD) and correlation analysis for noise-robust damage detection. This framework aims to first decompose the vibrational signal from multiple health states into intrinsic mode functions (IMFs). Secondly, highly correlated IMFs were extracted using correlation analysis to remove noisy IMFs. Finally, these IMFs were transformed into a time-frequency representation using continuous wavelet transform (CWT) and input to the MC-CAE-SVM model for feature learning and damage detection. Additionally, the accuracy and sensitivity of the model to damage are enhanced by optimizing the MC-CAE-SVM model hyperparameters. Moreover, anti-noise analysis is performed to check the noise-robustness of the proposed model by incorporating noise at various levels. The results showed that the proposed model can provide better damage detection performance compared to conventional models with excellent noise robustness.