Nitrogen Use Efficiency In Potato Research Articles

Exploring the Molecular Landscape of Nitrogen Use Efficiency in Potato (Solanum tuberosum L.) under Low Nitrogen Stress: A Transcriptomic and Metabolomic Approach

Enhancing crop nitrogen use efficiency (NUE) in agricultural sciences is a pivotal challenge, particularly for high-demand crops like potatoes (Solanum tuberosum L.), the world’s third most significant food crop. This study delves into the molecular responses of potatoes to low nitrogen (LN) stress, employing an integrative approach that combines transcriptomics and metabolomics to compare two cultivars with divergent NUE traits: XS6, known for its high NUE, and NS7, characterized by lower NUE. Our research unveils that XS6 exhibits higher chlorophyll and N content, increased tuber yield, and elevated N assimilation capacity under LN stress conditions compared to NS7. Through transcriptome analysis, we identified critical genes involved in C and N metabolism that had higher expression in XS6. A significant discovery was the high-affinity nitrate transporter 2.7 gene, which showed elevated expression in XS6, suggesting its key role in enhancing NUE. Metabolomics analysis further complemented these findings, revealing a sophisticated alteration of 1252 metabolites under LN stress, highlighting the dynamic interplay between carbon and N metabolism in coping with N scarcity. The integration of transcriptomic and metabolomic data underscored the crucial role of trehalose in mitigating N deficiency and enhancing NUE. This study provides novel insights into the molecular mechanisms governing NUE in potatoes, offering valuable perspectives for molecular breeding to enhance NUE in potatoes and potentially other crops.

Aeroponic evaluation identifies variation in Indian potato varieties for root morphology, nitrogen use efficiency parameters and yield traits

Nitrogen (N) is an essential nutrient for plant growth and tuber yield in potato. Its excess application is harmful for environment, and therefore dissecting traits involved in improving nitrogen use efficiency (NUE) and yield is essential to address them. This study was conducted to analyze variation in 56 Indian potato varieties at optimal N concentration (2 milli molar) under aeroponics for two years based on 17 different traits for root system architecture (length, surface area, diameter and volume), plant height, leaf area, root and shoot dry weight, tuber traits (number, yield and dry matter), and NUE parameters viz., NUE, agronomic NUE (AgNUE), nitrogen uptake efficiency (NUpE), nitrogen utilization efficiency (NUtE), harvest index (HI) and N harvest index (NHI). Significant differences (p < 0.05) were observed in the varieties for most traits under the investigation. The Agglomerative hierarchical clustering (AHC) analysis clearly distinguished the varieties into two main groups, and principal component analysis (PCA) analysis showed total 64.78% variability in the first two components. Significant and positive correlations were found for tuber yield with AgNUE, NUE and NUpE. On the other hand, top 10 promising varieties under aeroponics for above traits were Kufri Badshah, Kufri Frysona, Kufri Chipsona-3, Kufri Pushkar, Kufri Lalit, Kufri Ashoka, Kufri Sutlej, Kufri Jyoti, Kufri Mohan and Kufri Khyati. This study implies that a great variation exists in the Indian potato varieties including old and new categories and they can be exploited in breeding for increasing resource capture to improve NUE in potato.

Prospects of Improving Nitrogen Use Efficiency in Potato: Lessons From Transgenics to Genome Editing Strategies in Plants.

Prospects of Improving Nitrogen Use Efficiency in Potato: Lessons From Transgenics to Genome Editing Strategies in Plants.

Physiological and genome-wide RNA-sequencing analyses identify candidate genes in a nitrogen-use efficient potato cv. Kufri Gaurav

Nitrogen (N) is an important nutrient for plant growth. However, its excess application leads to environmental damage. Hence, improving nitrogen use efficiency (NUE) of plant is one of the plausible options to solve the problems. Aim of this study was to identify candidate genes involved in enhancing NUE in potato cv. Kufri Gaurav (N efficient). Plants were grown in aeroponic with two contrasting N regimes (low N: 0.75 mM, and high N: 7.5 mM). Higher NUE in Kufri Gaurav was observed in low N based on the parameters like NUE, NUpE (N uptake efficiency), NUtE (N utilization efficiency) and AgNUE (agronomic NUE). Further, global gene expression profiles in root, leaf and stolon tissues were analyzed by RNA-sequencing using Ion Proton™ System. Quality data (≥Q20) of 2.04–2.73 Gb per sample were mapped with the potato genome. Statistically significant (P ≤ 0.05) differentially expressed genes (DEGs) were identified such as 176 (up-regulated) and 30 (down-regulated) in leaves, 39 (up-regulated) and 105 (down-regulated) in roots, and 81 (up-regulated) and 694 (down-regulated) in stolons. The gene ontology (GO) terms like metabolic process, cellular process and catalytic activity were predominant. Our RT-qPCR analysis confirmed the gene expression profiles of RNA-seq. Overall, we identified candidate genes associated with improving NUE such as superoxide dismutase, GDSL esterase lipase, probable phosphatase 2C, high affinity nitrate transporters, sugar transporter, proline rich proteins, transcription factors (VQ motif, SPX domain, bHLH) etc. Our findings suggest that these candidate genes probably play crucial roles in enhancing NUE in potato.

Precision phenotyping of contrasting potato (Solanum tuberosum L.) varieties in a novel aeroponics system for improving nitrogen use efficiency: In search of key traits and genes

With increasing population, degrading soil health, limited arable land area, and high cost of nitrogen (N) fertilizers, improving nitrogen use efficiency (NUE) of potato is an inevitable approach to save the environment and achieve sufficient tuber yields with less N fertilizer supply. Recently, we have developed an aeroponics system to study NUE in potato using genomics, physiology, and breeding approaches. This study aims on precision phenotyping of plants of two distinct potato varieties (Kufri Gaurav, N efficient; Kufri Jyoti, N inefficient) in the novel aeroponics system. Plants were grown in aeroponics under controlled conditions with low N (0.75 mmol L−1 NO3−) and high N (7.5 mmol L−1 NO3−) levels. Plant biomass, root traits, total chlorophyll content, and plant N were increased with increasing N supply, whereas higher NUE parameters namely NUE, agronomic NUE (AgNUE), N uptake efficiency (NUpE), harvest index (HI), and N harvest index (NHI) were observed at low N. An NUE efficient cv. Kufri Gaurav showed higher tuber dry weight, fresh tuber yield, tuber number per plant, early start of tuber harvesting, root traits, stolon traits, NUE parameters, and higher amino acid (aspartic acid and asparagine) content at low N supply. Higher expression of nitrate reductase (NR), nitrite reductase (NIR), and asparagine synthetase (AS) genes was observed in the leaf tissues of Kufri Gaurav at high N. Thus, aeroponics-based precision phenotyping enables identification of NUE efficient genotypes based on key traits and genes involved in improving NUE in potato. Further, this study suggests that the potential of aeroponics can be utilized to investigate N biology in potato under different N regimes.

Mulching-Induced Changes in Tuber Yield and Nitrogen Use Efficiency in Potato in China: A Meta-Analysis

In dry environments, potato (Solanum tuberosum L.) is grown under mulching for water conservation and improving tuber yield and nitrogen use efficiency (NUE). A meta-analysis was conducted to determine how mulching improved tuber yield and NUE in potato and how yield and NUE is influenced by fertilization, tillage practices, and growing environment in China. A search of peer-reviewed publications was performed to collect data on the effects of mulching on yield and NUE in potato grown in China. The data included were from field studies with a mulching and a no mulching treatment and data on tuber yield and NUE. A total of 169 publications (17 in English and 152 in Chinese) containing 1802 observations from 105 sites were compiled into the dataset. Mulching significantly increased both tuber yield and NUE by an average of 24% compared to no mulching, respectively. Plastic film mulching was more effective in improving yield and NUE than straw mulching. The yield and NUE increase were highest under plastic film mulching on ridge-furrow plots and straw mulching on flat plots. Mulching was more effective at improving yield and NUE in the Northwest dryland region at a plant density between 55,000 and 70,000 plants ha−1 and with application of synthetic N and P2O5 at rates of 100−200 kg ha−1, K fertilization at 0−100 kg K2O ha−1, and without organic fertilization. Integrated use of organic fertilizer and mulching was found to reduce synthetic N and P fertilizer input by 50% and K fertilizer input by 100% for production without affecting yield and NUE. These results demonstrate that mulching increases yield and NUE in potato in China, but the benefits occur when the growing region, tillage, and fertilization practices are appropriately considered.

Development of molecular marker for nitrate reductase (NR) gene to improve nitrogen use efficiency in potato

Two diverse potato varieties Kufri Jyoti (N inefficient) and Kufri Gaurav (N efficient) were used to amplify, clone and analyze the sequence of nitrate reductase (NR) gene, involved in N metabolism in plants. Only single, distinct and un-fractioned two fragments amplified by the NR gene-based primers were cloned and sequence analyzed. Following sequence analysis, non-redundant sequences with uninterrupted open reading frames of NR homologues were identified to the known N metabolism. A cleaved amplified polymorphic sequence (CAPS) marker of the NR gene was developed for marker-assisted selection (MAS) in potato. The CAPS marker was validated in a tetraploid mapping population of 123 individuals and 48 potato varieties for its polymorphism. Thus, the development of new CAPS marker would be useful for MAS with better nitrogen use efficiency (NUE) in potato.

Potato Breeding for Nitrogen-Use Efficiency: Constraints, Achievements, and Future Prospects

In this review, the genetic potential and efforts made on different aspects of potato breeding for nitrogen-use efficiency (NUE) and the possible physiological and genetic mechanisms determining NUE in potato in relation to other model crops are presented. Strategies to utilize the diverse gene pool of potato and improve the NUE in contrasting N environments are currently evaluated under field conditions using different selection approaches. So far, focused efforts have been made on the identification of potato genotypic differences which will allow for the analysis of specific components of nitrogen-use efficiency and the effect of nitrogen fertilizer on a range of physiological processes and morphological traits of potato. To my knowledge, despite the availability of genome sequence and QTLs identified for NUE and related agronomic and physiological traits in potato, and genomic information from other model crops, candidate genes on NUE have not yet been identified in potato. To maximize the success rate of potato breeding for NUE, basic knowledge how plants respond to different N regimes and other environmental conditions and use of DNA marker technology are vital.

Integrated genomics, physiology and breeding approaches for improving nitrogen use efficiency in potato: translating knowledge from other crops.

Potato plays a key role in global food and nutritional security. Potato is an N fertiliser-responsive crop, producing high tuber yields. However, excessive use of N can result in environmental damage and high production costs, hence improving nitrogen use efficiency (NUE) of potato plants is one of the sustainable options to address these issues and increase yield. Advanced efforts have been undertaken to improve NUE in other plants like Arabidopsis, rice, wheat and maize through molecular and physiological approaches. Conversely, in potato, NUE studies have predominantly focussed on agronomy or soil management, except for a few researchers who have measured gene expression and proteins relevant to N uptake or metabolism. The focus of this review is to adapt knowledge gained from other plants to inform investigation of N metabolism and associated traits in potato with the aim of improving potato NUE using integrated genomics, physiology and breeding methods.

Potassium impact on nitrogen use efficiency in potato - a case study from the Central-East Europe

Potato yield is affected by an interaction between nitrogen (N) and potassium (K) supply. This hypothesis was verified in a series of field experiments conducted during 2010–2013 in Albania (AL), Czech Republic (CZ) and Poland (PL). The two-factorial experiment was founded on relative scales of K (0, 50, 100, and 150%), and N application rates (75% and 100%) of the recommended doses, which were country-specific. The average tuber yield was doubled for AL, increased by 50% for PL, and by 15% for the CZ in response to K and N interaction. These differences are caused by an increase in the apparent nitrogen efficiency (ANE), which rose significantly by the progressive Krates. Maximum average ANE of 90 kg tubers/kg N was recorded in AL; it was 2-fold lower in CZ. Top average apparent potassium efficiency (AKE) of 65 kg tubers/kg K was recorded in PL; it was 4-times lower in CZ. The relationships between AKE and ANE clearly demonstrate the tight interaction between the N and K, and its effects on potato yield. However, a sound K application management should be adjusted to the local edaphic and climatic conditions.