Nitrogen Metabolism Research Articles

Mixed and membrane-separated culturing of synthetic cyanobacteria-yeast consortia reveals metabolic cross-talk mimicking natural cyanolichens

Metabolite exchange mediates crucial interactions in microbial communities, significantly impacting global carbon and nitrogen cycling. Understanding these chemically-mediated interactions is essential for elucidating natural community functions and developing engineered synthetic communities. This study investigated membrane-separated bioreactors (mBRs) as a novel tool to identify transient metabolites and their producers/consumers in mixed microbial communities. We compared three co-culture methods (direct mixed, 2-chamber mBR, and 3-chamber mBR) to grow a synthetic binary community of the cyanobacterium Synechococcus elongatus PCC 7942 and the fungus Rhodotorula toruloides NBRC 0880, as well as axenic S. elongatus. Despite not being natural lichen constituents, these organisms exhibited interactions resembling those in cyanolichens. S. elongatus fixed CO2 into sugars as the primary shared metabolite, while R. toruloides secreted various biochemicals, predominantly sugar alcohols, mirroring the metabolite exchange observed in natural lichens. The mBR systems successfully captured metabolite gradients and revealed rapidly consumed compounds, including TCA cycle intermediates and amino acids. Our approach demonstrated that the 2-chamber mBR optimally balanced metabolite exchange and growth dynamics. This study provides insights into cross-species metabolic interactions and presents a valuable tool for investigating and engineering synthetic microbial communities with potential applications in biotechnology and environmental science.

Metabolic engineering of the serine/glycine network as a means to improve the nitrogen content of crops.

In plants, L-serine (Ser) biosynthesis occurs through various pathways and is highly dependent on the atmospheric CO2 concentration, especially in C3 species, due to the association of the Glycolate Pathway of Ser Biosynthesis (GPSB) with photorespiration. Characterization of a second plant Ser pathway, the Phosphorylated Pathway of Ser Biosynthesis (PPSB), revealed that it is at the crossroads of carbon, nitrogen, and sulphur metabolism. The PPSB comprises three sequential reactions catalysed by 3-phosphoglycerate dehydrogenase (PGDH), 3-phosphoSer aminotransferase (PSAT) and 3-phosphoSer phosphatase (PSP). PPSB was overexpressed in plants exhibiting two different modes of photosynthesis: Arabidopsis (C3 metabolism), and maize (C4 metabolism), under ambient (aCO2) and elevated (eCO2) CO2 growth conditions. Overexpression in Arabidopsis of the PGDH1 gene alone or PGDH1, PSAT1 and PSP1 in combination increased the Ser levels but also the essential amino acids threonine (aCO2), isoleucine, leucine, lysine, phenylalanine, threonine and methionine (eCO2) compared to the wild-type. These increases translated into higher protein levels. Likewise, starch levels were also increased in the PPSB-overexpressing lines. In maize, PPSB-deficient lines were obtained by targeting PSP1 using Cas9 endonuclease. We concluded that the expression of PPSB in maize male gametophyte is required for viable pollen development. Maize lines overexpressing the AtPGDH1 gene only displayed higher protein levels but not starch at both aCO2 and eCO2 conditions, this translated into a significant rise in the nitrogen/carbon ratio. These results suggest that metabolic engineering of PPSB in crops could enhance nitrogen content, particularly under upcoming eCO2 conditions where the activity of GPSB is limited.

Metagenomic study of the microbiome and key geochemical potentials associated with architectural heritage sites: a case study of the Song Dynasty city wall in Shou County, China

Historical cultural heritage sites are valuable for all of mankind, as they reflect the material and spiritual wealth of by nations, countries, or specific groups during the development of human civilization. The types and functions of microorganisms that form biofilms on the surfaces of architectural heritage sites influence measures to preserve and protect these sites. These microorganisms contribute to the biocorrosion of architectural heritage structures through the cycling of chemical elements. The ancient city wall of Shou County is a famous architectural and cultural heritage site from China’s Song Dynasty, and the protection and study of this site have substantial historical and cultural significance. In this study, we used metagenomics to study the microbial diversity and taxonomic composition of the Song Dynasty city wall in Shou County, a tangible example of Chinese cultural heritage. The study covered three main topics: (1) examining the distribution of bacteria in the biofilm on the surfaces of the Song Dynasty city wall in Shou County; (2) predicting the influence of bacteria involved in the C, N, and S cycles on the corrosion of the city wall via functional gene analysis; and (3) discussing cultural heritage site protection measures for biocorrosion-related bacteria to investigate the impact of biocorrosion on the Song Dynasty city wall in Shou County, a tangible example of Chinese cultural heritage. The study revealed that (1) the biofilm bacteria mainly belonged to Proteobacteria, Actinobacteria, Cyanobacteria, Bacteroidetes, and Firmicutes, which accounted for more than 70% of the total bacteria in the biofilms. The proportion of fungi in the microbial community of the well-preserved city wall was greater than that in the damaged city wall. The proportion of archaea was low—less than 1%. (2) According to the Shannon diversity index, the well-preserved portion of the ancient city wall had the highest diversity of bacteria, fungi, and archaea, and bacterial diversity on the good city wall was greater than that on the corroded city wall. (3) Bray–Curtis distances revealed that the genomes of the two good city walls were similar and that the genomes of the corroded city wall portions were similar. Researchers also detected human intestine-related bacteria in four locations on the city walls, with the proportion of these bacteria in the microbial community being greater on good city walls than on bad city walls. (4) KEGG functional analysis revealed that the energy metabolism and inorganic ion transport activities of the bacterial community on the corroded city wall were greater than those of the good city wall. (5) In the carbon cycle, the absence of active glycolysis, the ED pathway, and the TCA cycle played significant roles in the collapse of the east city wall. (6) The nitrogen cycling processes involved ammonia oxidation and nitrite reduction to nitrate. (7) In the sulfur cycle, researchers discovered a crucial differential functional gene, SoxY, which facilitates the conversion of thiosulfate to sulfate. This study suggests that, in the future, biological approaches can be used to help cultural heritage site protectors achieve targeted and precise protection of cultural relics through the use of microbial growth inhibition technology. The results of this study serve as a guide for the protection of cultural heritage sites in other parts of China and provide a useful supplement to research on the protection of world cultural heritage or architectural heritage sites.

Short‐term effects of food waste composts on physicochemical soil quality and horticultural crop production

AbstractAimComposts made from food waste will soon become more widespread on the market thanks to the upcoming enforcement of the legal obligation to sort biowaste. Our experiment aims at improving knowledge on the short‐term effects of these composts on soils’ physicochemical properties and vegetable crops.MethodsThree composts with contrasting characteristics were tested: a 100% v/v green waste compost (C1), and two composts composed of 50% v/v food waste and 50% v/v green waste, one prepared directly on the soil (C2) and the other from a competing producer who have the French NFU 44‐051 (AFNOR NF U 44‐051, 2006) certification for an organic amendment (C3). They were applied at a rate of 100 t ha−1 (dry matter) on two cropped soils with contrasting textures. Soil‐and‐compost mixes and compost‐free soil were planted with lettuce, radish, and potato.ResultsSeventy‐four days after planting, composts improved some soil physicochemical properties. The compost‐amended soils had better saturated hydraulic conductivity (Ks, 1 10−3–2.5 10−3 cm s−1) than the compost‐free soil (0.5 10−3 cm s−1), and water‐stable aggregates were higher than the initial value in C3 soil, equal to it in C2 soil, and lower in C1 soil. pH, total nitrogen, and organic carbon increased in all compost‐amended soils. Food waste compost stimulated crop production. The yields (dry matter) of all three crops were two to three times higher in the two soils amended with food waste compost compared to unamended soil, whereas they decreased almost two times in the soil amended with green waste compost due to nitrogen immobilization. Trace metals (particularly Pb and Cd) added by the composts, although present in edible parts of the plants, did not exceed the European rules for trace metals.ConclusionThus, food waste composts have positive effects on soils and vegetable crops, and the higher their organic matter content, the higher these positive effects.

Light-driven integration of diazotroph-derived nitrogen in euphotic nitrogen cycle

The bioavailable nitrogen fixed by diazotrophs is critical for sustaining productivity in the oligotrophic ocean. Despite this, understanding how diazotroph-derived nitrogen integrates into the nitrogen cycle within the euphotic zone remains unknown. Here, we investigated nitrogen fixation rates in the particulate and dissolved fractions within the euphotic zone of the North Pacific Subtropical Gyre. Our findings reveal the proportion of nitrogen fixation rates in the dissolved fraction increases with depth. Light manipulation experiments uncover that reduced light levels can stimulate the net release of diazotroph-derived nitrogen, aligning with our depth-related observations. Furthermore, we identify two distinct transfer pathways vertically associated with light-driven ecological niches. Specifically, the released diazotroph-derived nitrogen is transferred to non-diazotrophic plankton in the upper layers. Meanwhile, in the lower layers, it contributes to the nitrification process. Our results underscore the high bioavailability of diazotroph-derived nitrogen and its rapid integration into the nitrogen cycle through multiple pathways within the well-lit ocean.

Warming exacerbates global inequality in forest carbon and nitrogen cycles

Forests are invaluable natural resources that provide essential services to humanity. However, the effects of global warming on forest carbon and nitrogen cycling remain uncertain. Here we project a decrease in total nitrogen input and accumulation by 7 ± 2 and 28 ± 9 million tonnes (Tg), respectively, and an increase in reactive nitrogen losses to the environment by 9 ± 3 Tg for 2100 due to warming in a fossil-fueled society. This would compromise the global carbon sink capacity by 0.45 ± 0.14 billion tonnes annually. Furthermore, warming-induced inequality in forest carbon and nitrogen cycles could widen the economic gap between the Global South and Global North. High-income countries are estimated to gain US$179 billion in benefits from forest assets under warming, while other regions could face net damages of US$31 billion. Implementing climate-smart forest management, such as comprehensive restoration and optimizing tree species composition, is imperative in the face of future climate change.

Phylogenomic analysis of glutamine synthetase gene family in Helianthus annuus L.

Glutamine synthetase is one of the predominant enzymes in nitrogen metabolism. In developing leaves, glutamine is mainly produced in chloroplasts by the activity of the GS2 isoenzyme. It catalyzes glutamine synthesis from glutamate and ammonia in an ATP-dependent reaction. The genes encoding glutamine synthetase play a crucial role in ammonia and glutamate detoxification, acid-base homeostasis, cell signaling, and cell proliferation. The gene family responsible for producing glutamine synthetase has been previously documented in model plants like Arabidopsis. Nevertheless, there has been no exploration into its existence and attributes in oilseed crops like sunflower (Helianthus annuus L.). This study thoroughly analyzes, gene structure, conserved motifs, chromosomal location, phylogenetic relationships, and expression patterns to identify the glutamine synthetase genes in H. annuus. Our findings unveiled 19 genes encoding glutamine synthetase within the H. annuus genome. These genes were distributed across 11 chromosomes of H. annuus. Furthermore, we examined the expression patterns of all the HaGS genes using RNA-seq datasets, specifically focusing on their response to biotic and abiotic stress conditions. Under biotic stress, H. annuus expresses genes for mycorrhizal fungi named Rhizoglomus irregulare at four days post inflorescence (dpi) and 16 dpi. Under abiotic stress, the effect of drought and hormones was investigated. In drought, one gene, HaGS6D, showed the highest expression in the leaf. Meanwhile, in roots, gene HaGS7B showed the highest expression. Under hormonal stress, the effects of auxin, brassinosteroid, and cytokinin were studied on the leaf. For auxin, the gene HaGS7C showed the highest expression. For brassinosteroid, the gene HaGS7D showed the highest expression; for cytokinin, the gene HaGS6E showed the highest expression. Thus, these findings can significantly contribute to our understanding of the arrangement of glutamine synthetase genes in H. annuus and offer valuable insights for developing of drought-resistant cultivars of this species.

Elevated CO2 Concentration Extends Reproductive Growth Period and Enhances Carbon Metabolism in Wheat Exposed to Increased Temperature.

Both elevated atmospheric CO2 concentration ([CO2]) and increased temperature exert notable influences on wheat (Triticum aestivum L.) growth and productivity when examined individually. Nevertheless, limited research comprehensively investigates the combined effects of both factors. Winter wheat was grown in environment-controlled chambers under two concentrations of CO2 (ambient CO2 concentration and ambient CO2 concentration plus 200 µmol mol-1) and two levels of temperature (ambient temperature and ambient temperature plus 2°C). The phenology, photosynthesis, carbohydrate and nitrogen metabolism, yield and quality responses of wheat were investigated. Elevated [CO2] did not counteract warming-induced shortening of wheat phenological period but prolonged grain filling. Even though photosynthetic adaptation occurred during the reproductive growth period, elevated [CO2] still significantly enhanced carbohydrate accumulation under warming, particularly at the grain filling stage, thereby increasing yield by 20.1% compared with the ambient control. However, elevated [CO2] inhibited nitrogen assimilation at the grain filling stage under increased temperature by downregulating the expression levels of TaNR, TaNIR, TaGS1 and TaGOGAT and reducing glutamine synthetase activity, which directly led to a significant decrease of 19.4% in grain protein content relative to the ambient control. These findings suggest that elevated [CO2] will likely increase yield but decrease grain nutritional quality for wheat under future global warming scenarios.

Growth of soil ammonia-oxidizing archaea on air-exposed solid surface

Abstract Soil microorganisms often thrive as microcolonies or biofilms within pores of soil aggregates exposed to the soil atmosphere. However, previous studies on the physiology of soil ammonia-oxidizing microorganisms (AOM), which play a critical role in the nitrogen cycle, were primarily conducted using freely suspended AOM cells (planktonic cells) in liquid media. In this study, we examined the growth of two representative soil ammonia-oxidizing archaea (AOA), Nitrososphaera viennensis EN76 and “Nitrosotenuis chungbukensis” MY2, and a soil ammonia-oxidizing bacterium, Nitrosomonas europaea ATCC 19718 on polycarbonate membrane filters floated on liquid media to observe their adaptation to air-exposed solid surfaces. Interestingly, ammonia oxidation activities of N. viennensis EN76 and “N. chungbukensis” MY2 were significantly repressed on floating filters compared to the freely suspended cells in liquid media. Conversely, the ammonia oxidation activity of N. europaea ATCC 19718 was comparable on floating filters and liquid media. N. viennensis EN76 and N. europaea ATCC 19718 developed microcolonies on floating filters. Transcriptome analysis of N. viennensis EN76 floating filter-grown cells revealed upregulation of unique sets of genes for cell wall and extracellular polymeric substance biosynthesis, ammonia oxidation (including ammonia monooxygenase subunit C (amoC3) and multicopper oxidases), and defense against H2O2-induced oxidative stress. These genes may play a pivotal role in adapting AOA to air-exposed solid surfaces. Furthermore, the floating filter technique resulted in the enrichment of distinct soil AOA communities dominated by the “Ca. Nitrosocosmicus” clade. Overall, this study sheds light on distinct adaptive mechanisms governing AOA growth on air-exposed solid surfaces.

Actinobacteria derived from soybean/corn intercropping influence the subsequent wheat

Soil legacy effects, especially soil bacterial legacy effects, influence growth, fitness and nutrient acquisition in sequential cropping systems. To date, mechanisms underlying soil bacterial legacy influences on subsequent crops remain largely unknown. In this study, we employed soybean monoculture (S), corn monoculture (C), and soybean/corn intercropping (SC) to study soil legacy effects on the growth and nutrient acquisition of wheat. In these tests, S, C and SC drove establishment of distinctive soil bacterial communities, with higher abundances of Actinobacteria and Proteobacteria taxa observed in SC plots than in S and C treatments. Variation among soil bacterial communities was associated with functional shifts in nitrogen cycling in SC treatment compared to other treatments（C and Control）. Soil legacy effects in turn may contribute to growth, nutrient acquisition and grain production in wheat crops planted in rotations. Pot assay suggest that soil microorganism of SC treatment significantly increased the plant height of wheat by 15.1 % and 18.7 %, the shoot biomass by 50.7 % and 62.7 %, the nitrogen content by 76.0 % and 94.9 %, the phosphorus content by 80.3 % and 75.9 %, and the potassium content by 64.0 % and 83.7 % by compared with C and S. Actinobacteria taxa collections further promote nutrient acquisition of wheat. Taken together, our observations from field plots and manipulation of specific bacterial taxa revealed novel soil bacterial legacy effects of previously reared crops on subsequent crops. These new insights open avenues for using soil legacy effects for positive impacts in crop rotation systems.

Risk assessment and seasonal variation of atmospheric ammonia in Ondo State, Nigeria

The environment is impacted by atmospheric ammonia (NH3) in a number of ways, including the global nitrogen cycle, ecology, and the production of secondary particles. Our findings present an unparalleled depiction of the temporal and geographical properties of atmospheric NH3 in and around this megacity, based on long-term, continuous measurements of NH3 at various locations in Ondo State. The increase in atmospheric ammonia during this anthropogenic era is believed to pose a significant threat to humanity, with scientists linking it to a rise in global warming and climate change. KP-826 multiple gas detector was used to investigate ammonia gas in five locations within Ondo state and its correlation with meteorological parameters was examined in this study. The selection of Dumpsite, Cattle rearing farm and Poultry farm was purposeful because of their involvement in the production of ammonia gas. The mean concentration of NH3 (ppm) during wet season was 3.87 ± 1.60 and for dry season was 5.87 ± 1.60. The mean temperature (°C) in wet conditions is 32.51 ± 1.27, which is a little lower than the mean (33.51 ± 1.25) in dry conditions. The mean wind speed (in m/s) during wet conditions is 1.21 ± 0.32, which is greater than the mean wind speed (in m/s) during dry conditions of 1.11 ± 0.32. The mean value of humidity for wet situations is 72.08 ± 2.31, which is a little lower than the mean value for dry conditions, which is 76.07 ± 2.31. This work evaluated the potential health risks associated with NH3. The total hazard quotient (THQ) for adult was 1.30 × 10–6 for children 1.50 × 10–6. The children's HQ ranged from 2.41 to 4.15. The adult's ranged from 8.70 to 15.13. However, it was discovered that the health risk posed by breathing in atmospheric NH3 was far higher than the USEPA limits, where HQ > 1.

Refining habitat selection for sulfate-reducing bacteria: Evaluating suitability and adaptability for sulfate-metal wastewater treatment during anaerobic-to-aerobic transitions

Inoculating sulfate-reducing bacteria (SRB) habitats offers an eco-friendly method for treating sulfate-metal laden wastewater, characterized by high sulfate levels, low pH, and elevated heavy metals. This study optimizes source habitat selection of SRB by evaluating groundwater, sewage sludge, and lake sediment, focusing on their suitability and adaptability to aerobic-anaerobic transitions in industrial settings. Sewage sludge, with its slightly acidic pH, reducing environment, and high nutrient levels (Total organic carbon: 207.53 g kg−1, Total nitrogen: 47.12 g kg−1), provides robust SRB potential, as supported by its highest diversity index. However, heavy metals and polycyclic aromatic hydrocarbons pose application challenges. All habitats effectively reduced metal concentrations anaerobically, with Cu removal reaching 95%–99%, and groundwater achieved the highest chemical oxygen demand reduction (63.6%) aerobically. Sludge and sediment showed high biomass and extracellular polymeric substances (EPS) accumulation, while groundwater's nucleic acid-rich EPS enhanced metal immobilization, resulting in stable residual metal forms but with potential remobilization under oxidative conditions. Microbial analysis revealed that Proteobacteria and Firmicutes were key players during transitions, with the highest SRB abundance in groundwater. SRB composition varied across habitats, with Sedimentibacter (13.04%), Desulfovibrio (6.33%), and Desulfomonile (8.1%) dominating in groundwater, sludge, and sediment, respectively, during the anaerobic stage. Functional analysis highlighted sludge's persistence in sulfate reduction under aerobic conditions, while groundwater's limited nitrogen cycle involvement indicated broader biogeochemical limitations. Collectively, these findings highlight strengths and limitations of each habitat as SRB inoculum source, emphasizing the importance of tailored anaerobic-to-aerobic strategies for effective wastewater management.

Synergistic organic manure treatment with Al/Fe/Ca-based fluoride-fixing agents promote soil formation and utilization of phosphate flotation tailings

Soil utilization of phosphate ore flotation tailings (PTs) was achieved using F-fixing agents combined with organic manure treatment to address issues related to inefficient stabilization of P-F, heavy metal solidification/stabilization, poor physicochemical properties, and ecological disruption. The formulation for PTs soil utilization included 1.75 % polyaluminum sulfate (PAS), 1.75 % FeSO4, and 0.25 % CaO, with PTs content at ≥86.75 %. This approach enhanced water retention and improved nutrient and biochemical conditions. Various nutrient indexes met general planting soil requirements: organic matter 24.93 g/kg, available K 252.26 mg/kg, available Ca 2048.67 mg/kg, available Mg 246.13 mg/kg, and ammonia-nitrogen 42.47 mg/kg. The water-soluble P content of PTs-based soil decreased to 6.96 mg/kg, while available P increased to 677.99 mg/kg. Mn leaching toxicity was less than 0.016 mg/L, with a stabilization efficiency of 96.86 %. Water-soluble F in PTs-based soil was reduced to 11.133 mg/kg. This study maximized phosphorus resource utilization and prevented the migration of water-soluble P, F, and Mn to the surrounding environment. Potting experiments showed PTs-based soil was more effective than red soil and PTs-based raw materials in cabbage plantation, achieving a maximum seedling emergence rate of 98.33 %. Microbial diversity increased, and community structure improved in 40-day soil formation experiments, with PTs-based soils developing microbial communities involved in carbon and nitrogen cycling, enhancing resistance to external environmental disturbances, and promoting ecological utilization. These findings offer practical insights into the ecological utilization of large quantities of PTs and present a cost-effective approach for producing planting soils or ecological mulches from similar solid wastes.

Empirical evidence and theoretical understanding of ecosystem carbon and nitrogen cycle interactions.

Interactions between carbon (C) and nitrogen (N) cycles in terrestrial ecosystems are simulated in advanced vegetation models, yet methodologies vary widely, leading to divergent simulations of past land C balance trends. This underscores the need to reassess our understanding of ecosystem processes, given recent theoretical advancements and empirical data. We review current knowledge, emphasising evidence from experiments and trait data compilations for vegetation responses to CO2 and N input, alongside theoretical and ecological principles for modelling. N fertilisation increases leaf N content but inconsistently enhances leaf-level photosynthetic capacity. Whole-plant responses include increased leaf area and biomass, with reduced root allocation and increased aboveground biomass. Elevated atmospheric CO2 also boosts leaf area and biomass but intensifies belowground allocation, depleting soil N and likely reducing N losses. Global leaf traits data confirm these findings, indicating that soil N availability influences leaf N content more than photosynthetic capacity. A demonstration model based on the functional balance hypothesis accurately predicts responses to N and CO2 fertilisation on tissue allocation, growth and biomass, offering a path to reduce uncertainty in global C cycle projections.

Bioremediation of nitrate in agricultural drainage ditches: Impacts of low-grade weirs on microbiomes and nitrogen cycle gene abundance

Artificial drainage is essential for the success of modern agriculture, but it can also accelerate the movement of nutrients, especially nitrate, from soil to surrounding and downstream water bodies. Removal of nitrate from agricultural drainage by using controlled drainage systems, such as ditches installed with low-grade weirs, has been shown to help reduce nutrient loading into watersheds. However, the effect of low-grade weirs varies greatly, likely due to the differences in climate, system designs (e.g., hydraulic characteristics), and the resulting variation in microbial structures and functions in the ditch. In this study, we analyzed the temporal and spatial dynamics of microbiomes in a paired ditch system with weir-installed and uninstalled (control) channels over two years by using the 16S rRNA gene amplicon sequencing and the high-throughput quantitative PCR targeting various N cycle-associated genes [the Nitrogen Cycle Evaluation (NiCE) chip]. The installation of the low-grade weir had a significant impact on the microbiome structure and the distribution of denitrifiers. Microbiome structures also differed significantly between the ditch inlets and the outlets. Denitrification functional genes were more abundant in the inlets than in the other locations and in the channel installed with a low-grade weir. Additionally, oxygenic denitrifiers that utilize nitric oxide dismutase (nod) to produce N2 and O2 gases from nitric oxide were detected in the ditch channels, suggesting the occurrence of nitrate removal process that bypasses the production of nitrous oxide (N2O). The ditch microbiomes sampled during high-flow seasons (i.e., spring and fall) exhibited greater similarity to each other than microbiomes sampled during low-flow seasons (i.e., summer). Taken together, this study indicates that the low-grade weirs have the potential to foster a more favorable environment for denitrifiers, resulting in an increase in the abundance of denitrification functional genes. These findings could offer valuable insights into system management and optimization strategies.

Effects of Decabromodiphenyl Ethane and Cadmium Coexposure on Their Bioaccumulation, Oxidative Stress, Root Metabolism, and Rhizosphere Soil Microorganisms in a Soil-Rice System.

Decabromodiphenyl ethane (DBDPE) and cadmium (Cd) are typical pollutants in e-waste, seriously threatening crop growth. This study investigated the bioaccumulation and toxicity mechanisms of DBDPE and Cd in a soil-rice system. The results showed that 50 mg/kg DBDPE could reduce the level of accumulation of Cd in rice roots. DBDPE and Cd induced the antioxidant system (SOD, POD, and MDA) in rice seedlings. The combined exposure reduced the contents of carbohydrates, lipids, amino acids, and organic acids. Phenylalanine and phenylpropanoid metabolisms were identified as the key detoxification metabolic pathways under combined exposure. DBDPE and Cd disrupted the functional cycling of carbon and nitrogen in rhizosphere soil, while Gemmatimonadetes, Actinobacteria, and Bacteroidetes were the key bacterial groups responding to DBDPE and Cd stress. This work provides data for the toxicity risk evaluation of DBDPE and Cd combined exposure to food crops.

Rhizobial variation, more than plant variation, mediates plant symbiotic and fitness responses to herbicide stress.

Symbiotic mutualisms provide critical ecosystem services throughout the world. Anthropogenic stressors, however, may disrupt mutualistic interactions and impact ecosystem health. The plant-rhizobia symbiosis promotes plant growth and contributes to the nitrogen (N) cycle. While off-target herbicide exposure is recognized as a significant stressor impacting wild plants, we lack knowledge about how it affects the symbiotic relationship between plants and rhizobia. Moreover, we do not know whether the impact of herbicide exposure on symbiotic traits or plant fitness might be ameliorated by plant or rhizobial genetic variation. To address these gaps, we conducted a greenhouse study where we grew 17 full-sibling genetic families of red clover (Trifolium pratense) either alone (uninoculated) or in symbiosis with one of two genetic strains of rhizobia (Rhizobium leguminosarum) and exposed them to a concentration of the herbicide dicamba that simulated "drift" (i.e., off-target atmospheric movement) or a control solution. We recorded responses in immediate vegetative injury, key features of the plant-rhizobia mutualism (nodule number, nodule size, and N fixation), mutualism outcomes, and plant fitness (biomass). In general, we found that rhizobial variation more than plant variation determined outcomes of mutualism and plant fitness in response to herbicide exposure. Herbicide damage response depended on plant family, but also whether plants were inoculated with rhizobia and if so, with which strain. Rhizobial strain variation determined nodule number and size, but this was herbicide treatment-dependent. In contrast, strain and herbicide treatment independently impacted symbiotic N fixation. And while herbicide exposure significantly reduced plant fitness, this effect depended on inoculation state. Furthermore, the differential fitness benefits that the two rhizobial strains provided plants seemed to diminish under herbicidal conditions. Altogether, these findings suggest that exposure to low levels of herbicide impact key components of the plant-rhizobia mutualism as well as plant fitness, but genetic variation in the partners determines the magnitude and/or direction of these effects. In particular, our results highlight a strong role of rhizobial strain identity in driving both symbiotic and plant growth responses to herbicide stress.

Effects of Different LED Spectra on the Antioxidant Capacity and Nitrogen Metabolism of Chinese Cabbage (Brassica rapa L. ssp. Pekinensis)

Light quality optimization is a cost-effective method for increasing leafy vegetable quality in plant factories. Light-emitting diodes (LEDs) that enable the precise modulation of light quality were used in this study to examine the effects of red-blue (RB), red-blue-green (RBG), red-blue-purple (RBP), and red-blue-far-red (RBF) lights on the growth, antioxidant capacity, and nitrogen metabolism of Chinese cabbage leaves, while white light served as the control (CK). Results showed that the chlorophyll, carotenoid, vitamin C, amino acid, total flavonoid, and antioxidant levels of Chinese cabbage were all significantly increased under RBP combined light treatment. Meanwhile, RBG combined light treatment significantly increased the levels of amino acids but decreased the nitrite content of Chinese cabbage. In addition, RBF combined light treatment remarkably increased the amino acid levels but decreased the antioxidant capacity of Chinese cabbage. In conclusion, the addition of purple light to red-blue light was effective in improving the nutritional value and antioxidant capacity of Chinese cabbage. This light condition can be used as a model for a supplemental lighting strategy for leafy vegetables in plant factory production.

Long-term recovery of compacted reclaimed farmland soil in coal mining subsidence area

During the reclamation process of coal mining subsidence areas, mechanical compaction hinders the rapid recovery of reclaimed mine soil (RMS) functions to their pre-mining levels. To optimize reclaimed farmland management, which can promote the recovery of compacted soils, this study aims to explore the key factors and underlying mechanisms affecting RMS recovery from a systemic perspective using complex network theory (CNT). Soil samples from reclaimed farmland at different recovery stages (0, 2, 6, 12, 16, and 22 years) and adjacent non-subsided cultivated soils (NCS) were collected at a depth of 0 ∼ 20 cm in the eastern plains mining region of China. Twenty-four soil indicators were measured, and their evolution over RMS recovery was analyzed. CNT was employed to systematically analyze the complex network relationships among these indicators, identifying key factors and underlying mechanisms affecting RMS recovery. The results indicated that compaction led to soil macroaggregate (MA) destruction, mineralization losses of organic carbon and nitrogen, reduced microbial activity, degraded soil fertility, and increased complexity and disorder in the relationships among soil indicators. Re-cultivation had a positive effect on the recovery of RMS. After 22 years of cultivation, significant improvements in soil structure were observed, with MA increasing by 30.95 % (P < 0.05). Based on this, organic carbon gradually accumulated, with soil organic carbon (SOC) increasing by 250.94 % (P < 0.05). Microbial abundance similarly improved, with total microbial biomass (TB) increasing by 123.07 % (P < 0.05). Soil fertility was also enhanced, with alkali-hydrolyzed nitrogen (AN), available phosphorus (AP), and available potassium (AK) increasing by 125.96 %, 304.84 %, and 61.90 %, respectively. However, RMS indicators and system structure remained distinct from those of the NCS. The first approximately 12 years after re-cultivation represented a critical period during which soil structure improvements drove RMS functional recovery, with a focus on MA recovery. Increasing particulate organic carbon (POC) accumulation is an effective strategy to promote aggregation in compacted RMS. Microbially mediated carbon–nitrogen cycling emerged as a crucial driver of the gradual recovery of the RMS system after re-cultivation.

Cenchrus spinifex Invasion Alters Soil Nitrogen Dynamics and Competition

Invasive plants often alter biological soil conditions to increase their own competitiveness. Through indoor simulated nitrogen deposition culture experiments, we investigated the differences in growth indicators and nutrient content levels between the invasive plant Cenchrus spinifex Cav. and the native symbiotic plant Agropyron cristatum (L.) Gaertn. under diverse nitrogen application modes and planting-competition ratios. Furthermore, we examined the alterations in key microbial communities involved in soil nitrogen cycling of C. spinifex. The results indicated that the invasion of C. spinifex could inhibit the growth of native plants, and in fact altered the accumulation and transformation processes related to soil nitrogen, resulting in reduced rates of soil nitrogen transformation. The overarching aim of this research was to construct a theoretical foundation for the scientific comprehension of the invasion mechanisms of C. spinifex, in order to better prevent the further spread of this invasive plant and mitigate its pernicious impact on the current environment.