Nitrogen Starvation Research Articles

Interactive effects of water deficit and nitrogen deficiency on photosynthesis, its underlying component processes, and carbon loss processes in cotton

AbstractDrought stress and nitrogen (N) deficiency are important abiotic stresses that severely limit net photosynthetic rate (AN). A number of studies have investigated the underlying physiological limitations to AN in response to water deficit or N deficiency; however, the relative sensitivities of photosynthetic component processes and carbon loss processes to combined drought and N deficiency in field‐grown cotton (Gossypium hirsutum L.) have not been explored. Therefore, the objective of the present study was to determine the effects of combined water deficit and nitrogen deficiency on the underlying physiological processes driving AN in field‐grown cotton. Water‐deficit stress caused substantial reductions in AN, but reductions in AN were greater under optimum N conditions (74%) than under N deficiency (22%). Decreased CO2 diffusion, RuBP regeneration, and Rubisco carboxylation were major contributors to a decline in AN due to water‐deficit stress. Reductions in Rubisco carboxylation and RuBP regeneration were the greatest drivers of N deficiency‐induced decline in AN. Lower CO2 diffusion and Rubisco carboxylation were main constraints to AN due to combined water deficit and N deficiency. Regarding carbon loss processes, both dark respiration and photorespiration under water‐deficit stress or N deficiency, and only photorespiration under combined water deficit and N deficiency, contributed to declines in AN. Increased non‐photochemical quenching and/or photorespiration prevented photoinhibition of photosystem II under stress conditions. Overall, response of photosynthesis to water‐deficit stress was dependent on N availability, and rate‐limiting physiological processes contributing to declines in AN were dependent on the type of prevailing stress.

MicroRNAs Participate in Morphological Acclimation of Sugar Beet Roots to Nitrogen Deficiency.

Nitrogen (N) is essential for sugar beet (Beta vulgaris L.), a highly N-demanding sugar crop. This study investigated the morphological, subcellular, and microRNA-regulated responses of sugar beet roots to low N (LN) stress (0.5 mmol/L N) to better understand the N perception, uptake, and utilization in this species. The results showed that LN led to decreased dry weight of roots, N accumulation, and N dry matter production efficiency, along with damage to cell walls and membranes and a reduction in organelle numbers (particularly mitochondria). Meanwhile, there was an increase in root length (7.2%) and branch numbers (29.2%) and a decrease in root surface area (6.14%) and root volume (6.23%) in sugar beet after 7 d of LN exposure compared to the control (5 mmol/L N). Transcriptomics analysis was confirmed by qRT-PCR for 6 randomly selected microRNAs, and we identified 22 differentially expressed microRNAs (DEMs) in beet root under LN treatment. They were primarily enriched in functions related to binding (1125), ion binding (641), intracellular (437) and intracellular parts (428), and organelles (350) and associated with starch and sucrose metabolism, tyrosine metabolism, pyrimidine metabolism, amino sugar and nucleotide sugar metabolism, and isoquinoline alkaloid biosynthesis, as indicated by the GO and KEGG analyses. Among them, the upregulated miR156a, with conserved sequences, was identified as a key DEM that potentially targets and regulates squamosa promoter-binding-like proteins (SPLs, 104889216 and 104897537) through the microRNA-mRNA network. Overexpression of miR156a (MIR) promoted root growth in transgenic Arabidopsis, increasing the length, surface area, and volume. In contrast, silencing miR156a (STTM) had the opposite effect. Notably, the fresh root weight decreased by 45.6% in STTM lines, while it increased by 27.4% in MIR lines, compared to the wild type (WT). It can be inferred that microRNAs, especially miR156, play crucial roles in sugar beet root's development and acclimation to LN conditions. They likely facilitate active responses to N deficiency through network regulation, enabling beet roots to take up nutrients from the environment and sustain their vital life processes.

Nano-enhanced lipid and essential polyunsaturated fatty acid production by Thraustochytrium sp.: Boosting nutraceuticals and biodiesel industries

In recent years, microbial platforms for biofuels and nutraceuticals have gained recognition as sustainable alternatives. This study investigates titanium dioxide nanoparticles’ effect on lipid and omega fatty acid production in Thraustochytrium sp. Both titanium dioxide and nitrogen starvation independently enhance lipid content, with a synergistic effect observed when combined. Titanium dioxide increases lipid content by 37.69% (up to 78.84%), while nitrogen starvation achieves a 34.91% enhancement (total lipid 75.92 ± 2.43%). The combined approach yields the highest lipid content at 81.48 ± 3.14%, denoting a 46.19% increase. Additionally, titanium dioxide increases omega-6 (LA by 66.95%) and omega-9 (OA by 44.98%) levels, while nitrogen starvation enhances omega-3 (mainly EPA, by 91.83%) levels. This eco-friendly strategy has implications for bioenergy and nutraceuticals, offering a cost-effective means of enhancing oleaginous microorganisms for biodiesel production. The research outcomes contribute to addressing key obstacles in cost-efficient biodiesel production, impacting the economic landscape of the biodiesel industry.

Precise Positioning in Nitrogen Fertility Sensing in Maize (Zea mays L.).

This study documented the contribution of precise positioning involving a global navigation satellite system (GNSS) and a real-time kinematic (RTK) system in unmanned aerial vehicle (UAV) photogrammetry, particularly for establishing the coordinate data of ground control points (GCPs). Without augmentation, GNSS positioning solutions are inaccurate and pose a high degree of uncertainty if such data are used in UAV data processing for mapping. The evaluation included a comparative assessment of sample coordinates involving RTK and an ordinary GPS device and the application of precise GCP data for UAV photogrammetry in field crop research, monitoring nitrogen deficiency stress in maize. This study confirmed the superior performance of the RTK system in providing positional data, with 4 cm bias as compared to 311 cm with the non-augmented GNSS technique, making it suitable for use in agronomic research involving row crops. Precise GCP data in this study allow the UAV-based Normalized Difference Red-Edge Index (NDRE) data to effectively characterize maize crop responses to N nutrition during the growing season, with detailed analyses revealing the causal relationship in that a compromised optimum canopy chlorophyll content under limiting nitrogen environment was the reason for reduced canopy cover under an N-deficiency environment. Without RTK-based GCPs, different and, to some degree, misleading results were evident, and therefore, this study warrants the requirement of precise GCP data for scientific research investigations attempting to use UAV photogrammetry for agronomic field crop study.

Red-light-dependent chlorophyll synthesis kindles photosynthetic recovery of chlorotic dormant cyanobacteria using a dark-operative enzyme

Chlorosis dormancy resulting from nitrogen starvation and its resuscitation upon available nitrogen contributes greatly to the fitness of cyanobacterial population under nitrogen-fluctuating environments. The reinstallation of the photosynthetic machinery is a key process for resuscitation from a chlorotic dormant state; however, the underlying regulatory mechanism is still elusive. Here, we reported that red light is essential for re-greening chlorotic Synechocystis sp. PCC 6803 (a non-diazotrophic cyanobacterium) after nitrogen supplement under weak light conditions. The expression of dark-operative protochlorophyllide reductase (DPOR) governed by the transcriptional factor RpaB was strikingly induced by red light in chlorotic cells, and its deficient mutant lost the capability of resuscitation from a dormant state, indicating DPOR catalyzing chlorophyll synthesis is a key step in the photosynthetic recovery of dormant cyanobacteria. Although light-dependent protochlorophyllide reductase is widely considered as a master switch in photomorphogenesis, this study unravels the primitive DPOR as a spark to activate the photosynthetic recovery of chlorotic dormant cyanobacteria. These findings provide new insight into the biological significance of DPOR in cyanobacteria and even some plants thriving in extreme environments.

Sulfur starvation-induced autophagy in Saccharomyces cerevisiae involves SAM-dependent signaling and transcription activator Met4

Autophagy is a key lysosomal degradative mechanism allowing a prosurvival response to stresses, especially nutrient starvation. Here we investigate the mechanism of autophagy induction in response to sulfur starvation in Saccharomyces cerevisiae. We found that sulfur deprivation leads to rapid and widespread transcriptional induction of autophagy-related (ATG) genes in ways not seen under nitrogen starvation. This distinctive response depends mainly on the transcription activator of sulfur metabolism Met4. Consistently, Met4 is essential for autophagy under sulfur starvation. Depletion of either cysteine, methionine or SAM induces autophagy flux. However, only SAM depletion can trigger strong transcriptional induction of ATG genes and a fully functional autophagic response. Furthermore, combined inactivation of Met4 and Atg1 causes a dramatic decrease in cell survival under sulfur starvation, highlighting the interplay between sulfur metabolism and autophagy to maintain cell viability. Thus, we describe a pathway of sulfur starvation-induced autophagy depending on Met4 and involving SAM as signaling sulfur metabolite.

Promoting Anthocyanin Biosynthesis in Purple Lettuce through Sucrose Supplementation under Nitrogen Limitation

Although nitrogen deficiency and sucrose are linked to anthocyanin synthesis, the potential role of sucrose in regulating anthocyanin biosynthesis under low nitrogen conditions (LN) in purple lettuce (Lactuca sativa L.) remains unclear. We found that adding exogenous sucrose enhanced anthocyanin biosynthesis but significantly inhibited lettuce growth at high concentrations. Optimal results were obtained using 1 mmol/L sucrose in a low-nitrogen nutrient solution (LN + T1). Chlorophyll fluorescence imaging indicated that the addition of exogenous sucrose induced mild stress. Meanwhile, the activities of antioxidant enzymes (SOD, CAT, and POD) and antioxidant capacity were both enhanced. The mild stress activated the antioxidant system, thereby promoting the accumulation of anthocyanins induced by exogenous sucrose. LN + T1 (low nitrogen nutrient solution supplemented with 1 mmol/L sucrose) up-regulated enzyme genes in the biosynthetic pathway of anthocyanins, including phenylalanine ammonia-lyase (PAL), chalcone synthase (CHS), dihydroflavonol reductase (DFR), flavanone 3-hydroxylase (F3H), flavonoid 3′-hydroxylase (F3′H), flavone synthase II (FNSII), and anthocyanidin synthase (ANS). Additionally, various transcription factors such as AP2/ERF, MYB, bHLH, C2H2, NAC, C2C2, HB, MADS, bZIP, and WRKY were found to be up-regulated. This study elucidates the regulatory mechanism of anthocyanin metabolism in response to the addition of exogenous sucrose under low nitrogen conditions and provides a nutrient solution formula to enhance anthocyanin content in modern, high-quality agricultural cultivation.

Nitrogen Availability and Utilisation of Oligopeptides by Yeast in Industrial Scotch Grain Whisky Fermentation

Scotch grain whisky is produced with a substantial proportion of unmalted grains, which can result in nitrogen deficiency for yeast in the fermentable grain mash. This study examined nitrogen source availability and utilisation by three commercial whisky strains (Saccharomyces cerevisiae) during Scotch grain whisky fermentation, focusing on oligopeptides. Peptide uptake kinetics in synthetic whisky mash with defined peptides showed that oligopeptides of up to nine amino acids were taken up by the strains, albeit with some variability between the strains. The study found that peptides with appropriate molecular weights could replace free amino acids without negatively affecting fermentation kinetics. Moreover, fermentation performance improved when additional nitrogen was provided via peptides rather than diammonium phosphate. Analysis of industrial grain mash indicated that despite low initial yeast assimilable nitrogen, residual proteolytic activity from malt increased nitrogen availability during fermentation. Approximately 30% of the nitrogen consumed by yeast during grain mash fermentation was derived from peptides. LC-HRMS peptide analysis revealed complex dynamics of peptide formation, degradation, and utilisation. This study highlights the importance of oligopeptides in ensuring optimal fermentation efficiency in Scotch grain mash and similar substrates.

O-Methylated Isoflavones Induce nod Genes of Mesorhizobium ciceri and Pratensein Promotes Nodulation in Chickpea.

Legume plants form symbiotic relationships with rhizobia, which allow plants to utilize atmospheric nitrogen as a nutrient. This symbiosis is initiated by secretion of specific signaling metabolites from the roots, which induce the expression of nod genes in rhizobia. These metabolites are called nod gene inducers (NGIs), and various flavonoids have been found to act as NGIs. However, NGIs of chickpea, the second major pulse crop, remain elusive. We conducted untargeted metabolome analysis of chickpea root exudates to explore metabolites with increased secretion under nitrogen deficiency. Principal component (PC) analysis showed a clear difference between nitrogen deficiency and control, with PC1 alone accounting for 37.5% of the variance. The intensity of two features with the highest PC1 loading values significantly increased under nitrogen deficiency; two prominent peaks were identified as O-methylated isoflavones, pratensein and biochanin A. RNA-seq analysis showed that they induce nodABC gene expression in the Mesorhizobium ciceri symbiont, suggesting that pratensein and biochanin A are chickpea NGIs. Pratensein applied concurrently with M. ciceri at sowing promoted chickpea nodulation. These results demonstrate that pratensein and biochanin A are chickpea NGIs, and pratensein can be useful for increasing nodulation efficiency in chickpea production.

D-Glutamate production by stressed Escherichia coli gives a clue for the hypothetical induction mechanism of the ALS disease

In the search for the origin of Amyotrophic Lateral Sclerosis disease (ALS), we hypothesized earlier (Monselise, 2019) that d-amino acids produced by stressed microbiome may serve as inducers of the disease development. Many examples of d-amino acid accumulation under various stress conditions were demonstrated in prokaryotic and eukaryotic cells. In this work, wild-type Escherichia coli, members of the digestive system, were subjected to carbon and nitrogen starvation stress. Using NMR and LC–MS techniques, we found for the first time that d-glutamate accumulated in the stressed bacteria but not in control cells. These results together with the existing knowledge, allow us to suggest a new insight into the pathway of ALS development: d-glutamate, produced by the stressed microbiome, induces neurobiochemical miscommunication setting on C1q of the complement system. Proving this insight may have great importance in preventive medicine of such MND modern-age diseases as ALS, Alzheimer, and Parkinson.

Nitrogen starvation leads to TOR kinase-mediated downregulation of fatty acid synthesis in the algae Chlorella sorokiniana and Chlamydomonas reinhardtii

BackgroundWhen subject to stress conditions such as nutrient limitation microalgae accumulate triacylglycerol (TAG). Fatty acid, a substrate for TAG synthesis is derived from de novo synthesis or by membrane remodeling. The model industrial alga Chlorellasorokiniana accumulates TAG and other storage compounds under nitrogen (N)-limited growth. Molecular mechanisms underlying these processes are still to be elucidated.ResultPreviously we used transcriptomics to explore the regulation of TAG synthesis in C. sorokiniana. Surprisingly, our analysis showed that the expression of several key genes encoding enzymes involved in plastidic fatty acid synthesis are significantly repressed. Metabolic labeling with radiolabeled acetate showed that de novo fatty acid synthesis is indeed downregulated under N-limitation. Likewise, inhibition of the Target of Rapamycin kinase (TOR), a key regulator of metabolism and growth, decreased fatty acid synthesis. We compared the changes in proteins and phosphoprotein abundance using a proteomics and phosphoproteomics approach in C. sorokiniana cells under N-limitation or TOR inhibition and found extensive overlap between the N-limited and TOR-inhibited conditions. We also identified changes in the phosphorylation status of TOR complex proteins, TOR-kinase, and RAPTOR, under N-limitation. This indicates that TOR signaling is altered in a nitrogen-dependent manner. We find that TOR-mediated metabolic remodeling of fatty acid synthesis under N-limitation is conserved in the chlorophyte algae Chlorella sorokiniana and Chlamydomonas reinhardtii.ConclusionOur results indicate that under N-limitation there is significant metabolic remodeling, including fatty acid synthesis, mediated by TOR signaling. This process is conserved across chlorophyte algae. Using proteomic and phosphoproteomic analysis, we show that N-limitation affects TOR signaling and this in-turn affects the metabolic status of the cells. This study presents a link between N-limitation, TOR signaling and fatty acid synthesis in green-lineage.

Nitrogen limitation-induced adaptive response and lipogenesis in the Antarctic yeast Rhodotorula mucilaginosa M94C9.

The extremotolerant red yeast Rhodotorula mucilaginosa displays resilience to diverse environmental stressors, including cold, osmolarity, salinity, and oligotrophic conditions. Particularly, this yeast exhibits a remarkable ability to accumulate lipids and carotenoids in response to stress conditions. However, research into lipid biosynthesis has been hampered by limited genetic tools and a scarcity of studies on adaptive responses to nutrient stressors stimulating lipogenesis. This study investigated the impact of nitrogen stress on the adaptive response in Antarctic yeast R. mucilaginosa M94C9. Varied nitrogen availability reveals a nitrogen-dependent modulation of biomass and lipid droplet production, accompanied by significant ultrastructural changes to withstand nitrogen starvation. In silico analysis identifies open reading frames of genes encoding key lipogenesis enzymes, including acetyl-CoA carboxylase (Acc1), fatty acid synthases 1 and 2 (Fas1/Fas2), and acyl-CoA diacylglycerol O-acyltransferase 1 (Dga1). Further investigation into the expression profiles of RmACC1, RmFAS1, RmFAS2, and RmDGA1 genes under nitrogen stress revealed that the prolonged up-regulation of the RmDGA1 gene is a molecular indicator of lipogenesis. Subsequent fatty acid profiling unveiled an accumulation of oleic and palmitic acids under nitrogen limitation during the stationary phase. This investigation enhances our understanding of nitrogen stress adaptation and lipid biosynthesis, offering valuable insights into R. mucilaginosa M94C9 for potential industrial applications in the future.

Effects of nitrogen starvation on growth and biochemical composition of some microalgae species.

Nitrogen is one of the most important nutrient sources for the growth of microalgae. We studied the effects of nitrogen starvation on the growth responses, biochemical composition, and fatty acid profile of Dunaliella tertiolecta, Phaeodactylum tricornutum, and Nannochloropsis oculata. The lack of nitrogen caused changes in carbohydrate, protein, lipid, and fatty acid composition in all examined microalgae. The carbohydrate content increased 59% in D. tertiolecta, while the lipid level increased 139% in P. tricornutum under nitrogen stress conditions compared to the control groups. Nitrogen starvation increased the oligosaccharide and polysaccharide contents of D. tertiolecta 4.1-fold and 3.6-fold, respectively. Furthermore, triacylglycerol (TAG) levels in N. oculata and P. tricornutum increased 2.3-fold and 7.4-fold, respectively. The dramatic increase in the amount of TAG is important for the use of these microalgae as raw materials in biodiesel. Nitrogen starvation increased the amounts of oligosaccharides and polysaccharides of D. tertiolecta, while increased eicosapentaenoic acid (EPA) in N. oculata and docosahexaenoic acid (DHA) content in P. tricornutum. The amount of polyunsaturated fatty acids (PUFAs), EPA, DHA, oligosaccharides, and polysaccharides in microalgal species can be increased without using the too costly nitrogen source in the culture conditions, which can reduce the most costly of living feeding.

Efficient vegetation indices for phenotyping of abiotic stress tolerance in tea plant (Camellia sinensis (L.) Kuntze)

Early non-destructive detection of stress effect is crucial for efficient breeding strategies and germplasm characterization. Recently developed hyperspectral technologies allow to perform fast real-time phenotyping through reflectance-based vegetation indices. However, efficiency of these vegetation indices has to be validated for each crop in different environment. The aim of this study was to reveal efficient vegetation indices for phenotyping of abiotic stress (cold, freezing and nitrogen deficiency) response in tea plant. Among 31 studied VIs, few indices were efficient to distinguish tolerant and susceptible tea plants under abiotic stress: ZMI (Zarco-Tejada & Miller Index), VREI1,2,3 (Vogelmann Red Edge Indices), RENDVI (Red Edge Normalized Difference Vegetation Index), CTR1 and CTR2 (Carter Indices). Most of these indices are calculated based on reflectance in near-infrared area at 705–760 nm, indicating this range as promising for tea germplasm characterization under abiotic stresses. Tolerant tea plants showed the following values under freezing: ZMI ≥1.90, VREI1 ≥ 1.40, RENDVI ≥0.38, Ctr1 ≤ 1.74. The leaf N-content was positively correlated (Pearson's) with the following indices ZMI, VREI1, RENDVI, while negatively correlated with CTR, and VREI2,3. These results will be useful for tea germplasm management, genomics and breeding research aimed at abiotic stress tolerance of tea plant.

Microalgal lipid production: A comparative analysis of Nannochloropsis and Microchloropsis strains

AbstractThe oleaginous genera Nannochloropsis and Microchloropsis are recognized for their lipid accumulation capacity. Microalgal lipid accumulation is triggered by nitrogen starvation, negatively affecting photosynthesis and growth. Moreover, light and temperature play pivotal roles in microalgal physiology, lipid accumulation and composition. This study focuses on comparing the responses of eight microalgal strains from Nannochloropsis (N. oceanica Necton, N. oceanica IMET1, Nannochloropsis. sp. CCAP211/78, N. oculata, and N. limnetica) and Microchloropsis (M. gaditana CCFM01, M.gaditana CCMP526, and M.salina) to light, temperature, and nitrogen availability. Biomass, lipid content and productivities were monitored under different light intensities (150 (LL) and 600 μmol photons m−2 s−1 (HL)) and temperatures (15, 25, 30℃) under nitrogen (N-) starvation and replete conditions. Under N-starvation and HL, N. sp. exhibited the highest lipid content (59%) and productivity (0.069 g L-1 day-1), while N. oculata had the lowest lipid content (37.5%) and productivity (0.037 g L-1 day-1) among the eight strains. Notably, M. gaditana CCFM01 achieved the highest EPA content (4.7%), contrasting with N.oceanica IMET1 lowest EPA content (2.9%) under 150 μmol photons m−2 s−1 and N-repletion. The response to temperature fluctuations under LL was strain-dependent. Microchloropsis salina and M. gaditana CCFM01 demonstrated the highest and lowest lipid productivities (0.069 g L-1 day-1 and 0.022 g L-1 day-1, respectively) at 15℃ under N-starvation. Moreover, significant EPA accumulation across various strains was observed in N. oculata (5.7%) under N-repletion at 15°C, surpassing M. gaditana CCFM01 by 40%. Ultimately, the physiological responses to cultivation conditions vary markedly among microalgal strains, even within the same genus or species. This knowledge is essential for selecting suitable strains for the efficient microalgal lipid production industry. Graphical Abstract Optimi zing cultivation conditions for the maximal lipid production in Nannochloropsis andMicrochloropsis

Metabolic profiling reveal changes in shoots and roots of nitrogen-deficient tea plants (Camellia sinensis cv. Jinxuan)

Tea plants require high levels of nitrogen for optimal growth. However, delayed or insufficient nitrogen supply often induces nitrogen deficiency stress. This stress can adversely affect the plant's growth, development, and metabolic processes. Therefore, studying how tea plants respond to nitrogen deficiency conditions is crucial for enhancing our understanding and management of their growth environment. In this study, we utilized High-Performance Liquid Chromatography (HPLC), Gas Chromatography-Mass Spectrometry (GC–MS), and Ultra-Performance Liquid Chromatography-Tandem Mass Spectrometry (UPLC-MS) techniques to analyze the non-volatile and volatile components of both shoots and roots of the 'Jing Xuan (JX)' tea variety under nitrogen deprivation for 30 days (Nd). The results revealed that nitrogen deprivation led to a deceleration in shoot growth of 'JX', accompanied by reduced chlorophyll and water-soluble extract contents, with nitrogen accumulating predominantly in the roots. Significant decreases were observed in caffeine content in shoots and in the total amounts of theanine and catechins in both shoots and roots, while epigallocatechin gallate (EGCG) accumulation increased in shoots. Moreover, we identified 65 volatile components in shoots, including a notable decrease in floral and fruity compounds such as trans-β-Ionone, Geranylacetone, and α-Ionone. The biosynthesis of amino acids and phenylpropane metabolism are more active pathways under nitrogen stress. Nitrogen deficiency led to reduced levels of amino acids, carboxylic acids, flavonoids, steroids, and their derivatives in roots, with the most notable decline observed in carboxylic acids, typified by Leucine, l-Aspartate, and l-histidine. In contrast, shoots accumulate carbohydrates and phenolic compounds, mainly sucrose. Additionally, metabolites such as Myristic acid and 3-Dehydroshikimate could be a critical indicator of stress levels. These findings enhance our understanding of tea plant growth and metabolism under nitrogen deficiency, providing valuable insights for breeding nitrogen-efficient tea varieties.

Physiological characterization of the tomato cutin mutant cd1 under salinity and nitrogen stress.

We identified tomato leaf cuticle and root suberin monomers that play a role in the response to nitrogen deficiency and salinity stress and discuss their potential agronomic value for breeding. The plant cuticle plays a key role in plant-water relations, and cuticle's agronomic value in plant breeding programs is currently under investigation. In this study, the tomato cutin mutant cd1, with altered fruit cuticle, was physiologically characterized under two nitrogen treatments and three salinity levels. We evaluated leaf wax and cutin load and composition, root suberin, stomatal conductance, photosynthetic rate, partial factor productivity from applied N, flower and fruit number, fruit size and cuticular transpiration, and shoot and root biomass. Both nitrogen and salinity treatments altered leaf cuticle and root suberin composition, regardless of genotype (cd1 or M82). Compared with M82, the cd1 mutant showed lower shoot biomass and reduced partial factor productivity from applied N under all treatments. Under N depletion, cd1 showed altered leaf wax composition, but was comparable to the WT under sufficient N. Under salt treatment, cd1 showed an increase in leaf wax and cutin monomers. Root suberin content of cd1 was lower than M82 under control conditions but comparable under higher salinity levels. The tomato mutant cd1 had a higher fruit cuticular transpiration rate, and lower fruit surface area compared to M82. These results show that the cd1 mutation has complex effects on plant physiology, and growth and development beyond cutin deficiency, and offer new insights on the potential agronomic value of leaf cuticle and root suberin for tomato breeding.

Neutral lipid and chrysolaminarin metabolic pathways during nitrogen starvation and recovery in the diatom Phaeodactylum tricornutum

Oleaginous diatoms, including the marine model species Phaeodactylum tricornutum, have been identified as promising sources of compounds with a biotechnological interest including triacylglycerol and the soluble polysaccharide chrysolaminarin. These two molecules are accumulated in cells under nutrient starvation conditions, however, their consumption after nutrient replenishment lack a precise characterization. In this study, two ecotypes of P. tricornutum (Pt1 and Pt4) have been subjected to a nitrate starvation followed by a resupply to monitor their response through biochemical assays and gene expression quantification. We highlighted that both ecotypes experienced a two-step response to nitrogen resupply, with a rapid initial consumption of stored soluble carbohydrates probably allowing the restart of photosynthesis and protein synthesis, followed by a consumption of neutral lipids fueling cell division. Some genes were particularly upregulated after resupply, especially those encoding the lipases Phatr3_EG02408 and Phatr3_EG00720 and the exoglucosidase Phatr3_J43302, suggesting their role in degradation processes. Additionally, ecotype Pt4 recovered faster from stress than ecotype Pt1, possibly due to differences in specific gene regulations. Overall, these findings provide potential targets for understanding lipid and carbohydrate degradation, and for creating high-lipid producing strains.

Nitrogen deficiency tolerance conferred by introgression of a QTL derived from wild emmer into bread wheat

Key messageGenetic dissection of a QTL from wild emmer wheat, QGpc.huj.uh-5B.2, introgressed into bread wheat, identified candidate genes associated with tolerance to nitrogen deficiency, and potentially useful for improving nitrogen-use efficiency.Nitrogen (N) is an important macronutrient critical to wheat growth and development; its deficiency is one of the main factors causing reductions in grain yield and quality. N availability is significantly affected by drought or flooding, that are dependent on additional factors including soil type or duration and severity of stress. In a previous study, we identified a high grain protein content QTL (QGpc.huj.uh-5B.2) derived from the 5B chromosome of wild emmer wheat, that showed a higher proportion of explained variation under water-stress conditions. We hypothesized that this QTL is associated with tolerance to N deficiency as a possible mechanism underlying the higher effect under stress. To validate this hypothesis, we introgressed the QTL into the elite bread wheat var. Ruta, and showed that under N-deficient field conditions the introgression IL99 had a 33% increase in GPC (p < 0.05) compared to the recipient parent. Furthermore, evaluation of IL99 response to severe N deficiency (10% N) for 14 days, applied using a semi-hydroponic system under controlled conditions, confirmed its tolerance to N deficiency. Fine-mapping of the QTL resulted in 26 homozygous near-isogenic lines (BC4F5) segregating to N-deficiency tolerance. The QTL was delimited from − 28.28 to − 1.29 Mb and included 13 candidate genes, most associated with N-stress response, N transport, and abiotic stress responses. These genes may improve N-use efficiency under severely N-deficient environments. Our study demonstrates the importance of WEW as a source of novel candidate genes for sustainable improvement in tolerance to N deficiency in wheat.

Deciphering the genetic landscape of enhanced poly-3-hydroxybutyrate production in Synechocystis sp. B12

BackgroundMicrobial biopolymers such as poly-3-hydroxybutyrate (PHB) are emerging as promising alternatives for sustainable production of biodegradable bioplastics. Their promise is heightened by the potential utilisation of photosynthetic organisms, thus exploiting sunlight and carbon dioxide as source of energy and carbon, respectively. The cyanobacterium Synechocystis sp. B12 is an attractive candidate for its superior ability to accumulate high amounts of PHB as well as for its high-light tolerance, which makes it extremely suitable for large-scale cultivation. Beyond its practical applications, B12 serves as an intriguing model for unravelling the molecular mechanisms behind PHB accumulation.ResultsThrough a multifaceted approach, integrating physiological, genomic and transcriptomic analyses, this work identified genes involved in the upregulation of chlorophyll biosynthesis and phycobilisome degradation as the possible candidates providing Synechocystis sp. B12 an advantage in growth under high-light conditions. Gene expression differences in pentose phosphate pathway and acetyl-CoA metabolism were instead recognised as mainly responsible for the increased Synechocystis sp. B12 PHB production during nitrogen starvation. In both response to strong illumination and PHB accumulation, Synechocystis sp. B12 showed a metabolic modulation similar but more pronounced than the reference strain, yielding in better performances.ConclusionsOur findings shed light on the molecular mechanisms of PHB biosynthesis, providing valuable insights for optimising the use of Synechocystis in economically viable and sustainable PHB production. In addition, this work supplies crucial knowledge about the metabolic processes involved in production and accumulation of these molecules, which can be seminal for the application to other microorganisms as well.