Niche Differences Research Articles

Longitudinal and microhabitat distributions of fishes, amphibians, and reptiles and the environmental characteristics in the upper Yura River, Kyoto, Japan

AbstractQuantitative data on the distribution of aquatic vertebrate species along environmental gradients at multiple spatial scales are useful for assessing habitat quality, understanding habitat selection, and predicting the population structures of focal species. In addition, comparable datasets for multiple species enable the examination of the interspecific differences in habitat niches and their differentiation or aggregation patterns in a stream assemblage, as well as the theory of species coexistence. The distributions of aquatic vertebrates and environmental characteristics on longitudinal and microhabitat scales were investigated at 21 sites in a temperate stream, the Yura River, Kyoto, Japan, during the day and at night from August to September 2009. The sites were located from the headwaters to about 40 km downstream along the main channel of the river. Snorkeling observations were conducted using the line‐transect method following a standardized procedure at each sampling site with a detailed description of the spatial structure of aquatic vertebrate habitats. The microhabitat environments (water depth, current velocity, substratum characteristics, and presence/absence of vegetation cover) could be determined for all observed individuals. A total of 11,724 individuals belonging to 28 fish, 2 amphibian, and 1 reptile species were observed. The data can be used to examine the spatial patterns of focal aquatic vertebrate species and assemblages, and interspecific differences in habitat use among sympatric aquatic vertebrate species at multiple spatial scales.

Global patterns of terrestriality in amphibian reproduction

AbstractAimAmphibians exhibit two basic reproductive modes, terrestrial and aquatic, each with different ecophysiological constraints related to evaporative water loss. We hypothesize that these fundamental niche differences will generate strong geographical patterns at the global scale in response to spatial heterogeneity in temperature and water availability.LocationGlobal.Time periodPresent.Major taxa studiedAmphibians.MethodsWe used global distribution maps of 5,434 amphibian species, classified into terrestrial or aquatic breeders, to estimate the occurrence and proportion of terrestrial breeding species per 1° cell. We used multiple regression models to test the relative importance of seven abiotic variables: annual precipitation, annual mean temperature, annual mean relative air humidity, annual mean actual evapotranspiration, availability of lotic and lentic environments and slope. We used residuals autocovariate (RAC) generalized multiple regression models to control for spatial autocorrelation and a spatial vector based on amphibian phylogeny to account for phylogenetic dependencies among cells. Model generality was evaluated by contrasting results between 11 widely recognized world zoogeographical realms.ResultsGlobally, the occurrence of terrestrial breeding species was better explained by temperature followed by total annual rainfall, relative air humidity and terrain slope. In contrast, the proportion of terrestrial breeders was better explained by terrain slope, followed by total rainfall, temperature and relative air humidity. Actual evapotranspiration and the extension of large lotic and lentic water bodies played a minor role. However, the relative importance and even the sign of the regression coefficients varied among realms, revealing different evolutionary pressures.Main conclusionsNiche differences among terrestrial and aquatic breeding amphibian species are reflected in their distinct geographical distribution across the globe. Adequate conditions for terrestrial reproduction to evolve and thrive are reached in distinct ways in different realms. Temperature constraints and slope suggest that reproductive modes will be impacted differently by climate change.

Niche divergence and limits to expansion in the high polyploid Dianthus broteri complex.

Niche evolution in plant polyploids remains controversial and evidence for alternative patterns has been reported. Using the autopolyploid Dianthus broteri complex (2×, 4×, 6× and 12×) as a model, we aimed to integrate three scenarios - competitive exclusion, recurrent origins of cytotypes and niche filling - into a single framework of polyploid niche evolution. We hypothesized that high polyploids would tend to evolve towards extreme niches when low ploidy cytotypes have nearly filled the niche space. We used several ecoinformatics and phylogenetic comparative analyses to quantify differences in the ecological niche of each cytotype and to evaluate alternative models of niche evolution. Each cytotype in this complex occupied a distinct ecological niche. The distributions were mainly constrained by soil characteristics, temperature and drought stress imposed by the Mediterranean climate. Tetraploids had the highest niche breadth and overlap due to their multiple origins, whereas the higher ploidy cytotypes were found in different, restricted, nonoverlapping niches. Niche evolution analyses suggested a scenario with one niche optimum for each ploidy, including the two independent tetraploid lineages. Our results suggest that the fate of nascent polyploids could not be predicted without accounting for phylogenetic relatedness, recurrent origins or the niche occupied by ancestors.

Priority Effects and Nonhierarchical Competition Shape Species Composition in a Complex Grassland Community.

Niche and fitness differences control the outcome of competition, but determining their relative importance in invaded communities—which may be far from equilibrium—remains a pressing concern. Moreover, it is unclear whether classic approaches for studying competition, which were developed predominantly for pairs of interacting species, will fully capture dynamics in complex species assemblages. We parameterized a population-dynamic model using competition experiments of two native and three exotic species from a grassland community. We found evidence for minimal fitness differences or niche differences between the native species, leading to slow replacement dynamics and priority effects, but large fitness advantages allowed exotics to unconditionally invade natives. Priority effects driven by strong interspecific competition between exotic species drove single-species dominance by one of two exotic species in 80% of model outcomes, while a complex mixture of nonhierarchical competition and coexistence between native and exotic species occurred in the remaining 20%. Fungal infection, a commonly hypothesized coexistence mechanism, had weak fitness effects and is unlikely to substantially affect coexistence. In contrast to previous work on pairwise outcomes in largely native-dominated communities, our work supports a role for nearly neutral dynamics and priority effects as drivers of species composition in invaded communities.

A nurse plant benefits from facilitative interactions through mycorrhizae.

Plant facilitation promotes coexistence by maintaining differences in the regeneration niche because some nurse species recruit under arid conditions, whereas facilitated species recruit under more mesic conditions. In one Mexican community, 95% of species recruit through facilitation; Mimosa luisana being a keystone nurse for many of them. M.luisana individuals manifest greater fitness when growing in association with their facilitated plants than when growing in isolation. This observation suggests that nurses also benefit from their facilitated plants, a benefit thought to be mediated by mycorrhizal fungi. Under field conditions, we experimentally tested whether mycorrhizal fungi mediate the increased fitness that M.luisana experiences when growing in association with its facilitated plants. We applied fungicide to the soil for nurse plants growing alone and growing in association with their facilitated plants in order to reduce the mycorrhizal colonisation of roots. We then assessed the quantity and quality of seed production of M.luisana in four treatments (isolated-control, isolated-fungicide, associated-control and associated-fungicide). Fungicide application reduced the percentage root length colonised by mycorrhizae and reduced fitness of M.luisana when growing in association with their facilitated plants but not when growing in isolation. This reduction was reflected in the total number of seeds, number of seeds per pod, seed mass and seed viability. These results suggest that nurses benefit from the presence of their facilitated plants through links established by mycorrhizae, indicating that both plants and belowground mutualistic communities are all part of one system, coexisting by means of intrinsically linked interactions.

Size differences predict niche and relative fitness differences between phytoplankton species but not their coexistence.

Here we aim to incorporate trait-based information into the modern coexistence framework that comprises a balance between stabilizing (niche-based) and equalizing (fitness) mechanisms among interacting species. Taking the modern coexistence framework as our basis, we experimentally tested the effect of size differences among species on coexistence by using fifteen unique pairs of resident vs. invading cyanobacteria, resulting in thirty unique invasibility tests. The cyanobacteria covered two orders of magnitude differences in size. We found that both niche and fitness differences increased with size differences. Niche differences increased faster with size differences than relative fitness differences and whereas coexisting pairs showed larger size differences than non-coexisting pairs, ultimately species coexistence could not be predicted on basis of size differences only. Our findings suggest that size is more than a key trait controlling physiological and population-level aspects of phytoplankton, it is also relevant for community-level phenomena such as niche and fitness differences which influence coexistence and biodiversity.

Autopolyploid lineage shows climatic niche expansion but not divergence in Arabidopsis arenosa.

Successful establishment of neopolyploids, and therefore polyploid speciation, is thought to be contingent on environmental niche shifts from their progenitors. We explore this niche shift hypothesis in the obligate outcrosser Arabidopsis arenosa complex, which includes diploid and recently formed autotetraploid populations. To characterize the climatic niches for both cytotypes in Arabidopsis arenosa, we first gathered climatic data from localities with known ploidy types. We then estimated the climatic niches for diploids and autotetraploids and calculated niche overlap. Using this niche overlap statistic, we tested for niche equivalency and similarity. We explored differences in niches by estimating and comparing niche optimum and breadth and then calculated indices of niche expansion and unfilling. Climatic niche overlap between diploids and autotetraploids is substantial. Although the two niche models are not significantly divergent, they are not identical as they differ in both optimum and breadth along two environmental gradients. Autotetraploids fill nearly the entire niche space of diploids and have expanded into novel environments. We find climatic niche expansion but not divergence, together with a moderate change in the niche optimum, in the autotetraploid lineage of Arabidopsis arenosa. These results indicate that the climatic niche shift hypothesis alone cannot explain the coexistence of tetraploid and diploid cytotypes.

Trophic niche breadth of pond zooplankton species using stable isotope analysis and the relationship with the abiotic and biotic factors.

Zooplankton species have different feeding habits, but the diversity of their food resources and the factors governing them are still largely unknown. We here estimated the differences in the trophic niche breadths of dominant zooplankton species in ponds, using stable isotopes. To understand the differences in trophic niches of different zooplankton species, we measured the carbon and nitrogen stable isotope ratios and calculated the nearest-neighbour distance (NND), and standard deviation of NND (SDNND) of the bi-plot space of stable carbon and nitrogen isotopes in pond zooplankton. We tested the relationship between the NND/SDNND and environmental factors, as well as the zooplankton biomass, using generalized linear models (GLMs). For cladocerans, including Bosmina, Ceriodaphnia and Daphnia, the NNDs were significantly correlated with the biomass, pond morphology (volume and depth), total phosphorous (TP) and fish presence. For copepod species, including Eodiaptomus and cyclopoids, NNDs were significantly correlated with pond morphology, TP and fish presence, but not with biomass. In GLMs of SDNND, significant correlated factors were less than those for NND, and for some species, pond morphology and TP were significantly correlated with SDNND. Here, we found that the NND and SDNND of zooplankton species were related to various factors, including their biomass, predator presence, pond size and water quality. For cladocerans, biomass may be supported by trophic niche breadth, probably because of the consequences of resource competition. Also, predation and ecosystem size may influence trophic niche breadth due to changes in zooplankton behaviours.

胚胎干细胞的分化和多能干细胞巢模型——动物经络系统中胚胎干细胞的分化

胚胎干细胞的分化和多能干细胞巢模型——动物经络系统中胚胎干细胞的分化

Marketing competitive strategies: a case study of national aluminium factory in Bahrain

This case study was about the National Aluminum Factory (NAF) in Bahrain. The NAF was founded in 1986 as a workshop to assemble aluminium and glass products for windows and doors only. Then in 1997 it has become a factory at a medium-sized owned property. As a result of this extension, the factory provides several fixing services, services in excavation and backfilling, beside iron material assembly. The general manager of NAF currently adopts the cost-leadership strategy. However, this strategy is very difficult to implement for the time being due to the high rate of inflation in the cost of construction materials, and the high cost of operational expenses, beside worker's wages. The other two alternative competitive strategies are differentiation strategy and niche strategy. However, it is uncertain which strategy should be adopted by the factory's manager for the coming two years to defeat competitors and to be the market leader.

Gametophyte niche differences among sympatric tree ferns.

Forest community assembly is usually framed in terms of sporophyte dynamics; however, the recruitment and maintenance of fern populations, frequently influential in forest composition and structure, are initially determined by gametophytes. Sporophytes of three Cyathea tree fern species show habitat partitioning along gradients of phosphorus and light; we asked whether gametophyte niche differences parallel this pattern. To compare niche characteristics among taxa we compared growth rates to a size threshold (≥3 mm) of gametophytes under controlled conditions using a multi-factorial, multi-level (3 × 4) experiment, varying irradiance (5.4 ± 4.4; 59.1 ± 44.3; 107 ± 74.1 µmol m-2 s-1) and orthophosphate concentrations (5, 10, 20, 40 mg kg-1). Gametophytes of the pioneer species C. medullaris developed to the size threshold across a broad range of phosphate and irradiance treatments (more than 20% of gametophytes in ≥ 7 of the 12 treatments), peaking at 20 mg kg-1 P and 60 µmol m-2 s-1 irradiance. The growth rates of the forest understorey species C. dealbata and C. smithii also peaked at 60 µmol m-2 s-1 but varied across treatments, suggesting niche differentiation along irradiance and orthophosphate gradients. Our analysis suggests that gametophyte development is strategically aligned to the ecological habits of sporophytes and that forest community assembly is likely strongly influenced by the independent gametophyte life-stage.

Demography of evergreen and deciduous oaks in a mixed oak savanna: insights from a long‐term experiment

AbstractThe co‐existence of evergreen and deciduous oaks in Mediterranean‐climate savannas has motivated comparative studies on species’ physiological adaptations to light and drought, establishment niche differences in acorn production, dispersal and seedling herbivory, and differential sapling tolerance of ungulate browsing. Understanding how species’ differences collectively affect co‐occurrence or segregation requires long‐term studies that consider multiple life stages. We compare survival, height growth, and modeled population growth rate of the evergreen sclerophyll, Quercus agrifolia, to those of the winter‐deciduous, broadleaved Q. lobata in southern California savanna sites where the species naturally co‐occur. We evaluate species’ performances after 8.7 yr for four cohorts sown as acorns in 1997, 1998, 2000, and 2001 under four different levels of protection from cattle, deer, and rodents. Survival curves for the two species were closely similar, with large differences between cohorts associated with precipitation in the year acorns were sown. Survival and growth rates of Q. agrifolia seedlings and saplings were slightly lower, and were more reduced by ungulates and rodents, than those of Q. lobata. No Q. agrifolia plants (0/1431) exposed to ungulates (cattle and/or deer) and rodents survived to the end of the experiment. Of 1421 Q. lobata acorns planted in these treatments, only 19 plants (1.3%) survived 8.7 yr and none of these plants progressed out of the ungulate browse layer. However, when protected from both ungulates and rodents, survival rates increased significantly for both species, and Q. agrifolia increased height faster than Q. lobata. Simulated population growth rates increased slightly for plants protected from ungulates, and 95% confidence intervals spanned the stable population growth rate of 1. With exclusion of ungulates and rodents, sapling and small tree recruitment rates for both species far exceeded those needed to offset the rate of recent adult mortality, with modeled population growth rates of 1.07–1.11. Our results underscore the essential role of occasional high rainfall years for initial establishment, plus the key role of consumers in limiting early survival and growth of both evergreen and deciduous oaks in mixed oak savannas.

The exocyst functions in niche cells to promote germline stem cell differentiation by directly controlling EGFR membrane trafficking.

The niche controls stem cell self-renewal and differentiation in animal tissues. Although the exocyst is known to be important for protein membrane trafficking and secretion, its role in stem cells and niches has never been reported. Here, this study shows that the exocyst functions in the niche to promote germline stem cell (GSC) progeny differentiation in the Drosophila ovary by directly regulating EGFR membrane trafficking and signaling. Inactivation of exocyst components in inner germarial sheath cells, which form the differentiation niche, causes a severe GSC differentiation defect. The exocyst is required for maintaining niche cells and preventing BMP signaling in GSC progeny by promoting EGFR membrane targeting and signaling through direct association with EGFR. Finally, it is also required for EGFR membrane targeting, recycling and signaling in human cells. Therefore, this study reveals a novel function of the exocyst in niche cells to promote stem cell progeny differentiation by directly controlling EGFR membrane trafficking and signaling in vivo, and also provides important insight into how the niche controls stem cell progeny differentiation at the molecular level.

Defining gene networks controlling the maintenance and function of the differentiation niche by an in vivo systematic RNAi screen

In the Drosophila ovary, escort cells (ECs) extrinsically control germline stem cell (GSC) maintenance and progeny differentiation. However, the underlying mechanisms remain poorly understood. In this study, we identified 173 EC genes for their roles in controlling GSC maintenance and progeny differentiation by using an in vivo systematic RNAi approach. Of the identified genes, 10 and 163 are required in ECs to promote GSC maintenance and progeny differentiation, respectively. The genes required for progeny differentiation fall into different functional categories, including transcription, mRNA splicing, protein degradation, signal transduction and cytoskeleton regulation. In addition, the GSC progeny differentiation defects caused by defective ECs are often associated with BMP signaling elevation, indicating that preventing BMP signaling is a general functional feature of the differentiation niche. Lastly, exon junction complex (EJC) components, which are essential for mRNA splicing, are required in ECs to promote GSC progeny differentiation by maintaining ECs and preventing BMP signaling. Therefore, this study has identified the major regulators of the differentiation niche, which provides important insights into how stem cell progeny differentiation is extrinsically controlled.

How do lianas and vines influence competitive differences and niche differences among tree species? Concepts and a case study in a tropical forest

AbstractLianas and other climbing plants are structural parasites of trees, generally reducing host tree survival, growth, and reproduction, yet their influences on the outcome of competition among tree species have remained largely unexplored.We propose that there are three distinct components to liana–tree interactions:prevalence, defined as the proportion of infested trees;load, defined as the mean liana cover on infested trees; andtolerance, defined as the effect of a given level of infestation on tree population growth rates. We introduce a new metric that integrates these components, the lianaburden, defined as the total effect of lianas on per capita population growth rates given current prevalence, load, and tolerance. Using these metrics, we quantify variation among 33 co‐occurring tropical tree species in liana–tree interactions and its relation with shade‐tolerance.The focal tree species vary strongly in liana prevalence, load, tolerance, and burden. Interspecific variation in tolerance is the largest contributor to interspecific variation in burden. Species rankings of per capita population growth rates under current liana infestation levels differ somewhat from rankings under liana‐free conditions, and differ strongly from rankings under uniformly high liana infestation. Thus, lianas alter competitive hierarchies to benefit tree species that are relatively tolerant of and/or resistant to lianas. Among the focal tree species, shade‐tolerance is positively correlated with liana tolerance and prevalence, but largely unrelated to load and burden, meaning shade‐tolerance does not predict which species are competitively disadvantaged by lianas. We describe a variety of mechanisms by which lianas may potentially increase or decrease niche differences among tree species, including interactions with spatial and temporal environmental niche partitioning, and potential differences among tree species in relative vulnerability to different liana species.Synthesis. Lianas, like other natural enemies, can in principle alter competitive hierarchies and niche structure of co‐occurring tree species, and our analyses suggest such influences are substantial in our focal tropical tree community and likely many other tree communities as well. Quantifying these effects requires a more comprehensive approach including analyses and modelling of dynamics of liana–tree interactions and their variation with tree and liana species identities.

Mutualists Stabilize the Coexistence of Congeneric Legumes.

Coexistence requires that stabilizing niche differences, which cause species to limit themselves more than others, outweigh relative fitness differences, which cause competitive exclusion. Interactions with shared mutualists, which can differentially affect host fitness and change in magnitude with host frequency, can satisfy these conditions for coexistence, yet empirical tests of mutualist effects on relative fitness and stabilizing niche differences are largely lacking within the framework of coexistence theory. Here, we show that N-fixing rhizobial mutualists mediate coexistence in four naturally co-occurring congeneric legume (Trifolium) species. Using experimental greenhouse communities, we quantified relative fitness and stabilizing niche differences for each species in the presence of rhizobia originating from conspecific or congeneric hosts. Rhizobia stabilized coexistence by increasing the self-limitation of Trifolium species grown with rhizobia isolated from conspecifics, thus allowing congeners to increase when rare. Greenhouse-measured invasion growth rates predicted natural, unmanipulated coexistence dynamics of Trifolium species over 2 years at our field sites. Our results demonstrate that interactions with shared mutualists can stabilize the coexistence of closely related species.

Spatio-temporal variability in trophic ecology of jumbo squid (Dosidicus gigas) in the southeastern Pacific: Insights from isotopic signatures in beaks

Jumbo squid (Dosidicus gigas) plays an important role in marine ecosystems throughout the eastern Pacific, but the knowledge of its feeding and migration patterns is limited. In this study, we measured stable isotopic values (δ13C and δ15N) from the edge of lower beak lateral wall to investigate spatio-temporal and trophic ecology of jumbo squid in the southeastern Pacific. The effects of latitude, mantle length and distance to the shelf break (DSB) on isotopic values in normal years (2013 and 2014) and an El Niño year (2015) were evaluated with a generalized additive model. Differences in response curves between the normal and El Nino years revealed a shift of migratory strategy. Compared with normal years, the predicted range of the horizontal migration of jumbo squid became smaller in the El Niño year. The analysis characterized significant differences in the isotopic niche between years and areas. The isotopic niche in the El Niño year was narrower than those in normal years. Our results suggest that the migration and foraging ecology of jumbo squid are substantially influenced by mesoscale oceanic oscillations. The spatio-temporal variability of trophic patterns indicates that substantial migration and foraging plasticity facilitate jumbo squid with a high capability to adapt to environmental volatility.

Urbanization erodes niche segregation in Darwin's finches.

Urbanization is influencing patterns of biological evolution in ways that are only beginning to be explored. One potential effect of urbanization is in modifying ecological resource distributions that underlie niche differences and that thus promote and maintain species diversification. Few studies have assessed such modifications, or their potential evolutionary consequences, in the context of ongoing adaptive radiation. We study this effect in Darwin's finches on the Galápagos Islands, by quantifying feeding preferences and diet niche partitioning across sites with different degrees of urbanization. We found higher finch density in urban sites and that feeding preferences and diets at urban sites skew heavily toward human food items. Furthermore, we show that finches at urban sites appear to be accustomed to the presence of people, compared with birds at sites with few people. In addition, we found that human behavior via the tendency to feed birds at non‐urban but tourist sites is likely an important driver of finch preferences for human foods. Site differences in diet and feeding behavior have resulted in larger niche breadth within finch species and wider niche overlap between species at the urban sites. Both factors effectively minimize niche differences that would otherwise facilitate interspecies coexistence. These findings suggest that both human behavior and ongoing urbanization in Galápagos are starting to erode ecological differences that promote and maintain adaptive radiation in Darwin's finches. Smoothing of adaptive landscapes underlying diversification represents a potentially important yet underappreciated consequence of urbanization. Overall, our findings accentuate the fragility of the initial stages of adaptive radiation in Darwin's finches and raise concerns about the fate of the Galápagos ecosystems in the face of increasing urbanization.

What are the sympatric mechanisms for three species of terrestrial hermit crab (Coenobita rugosus, C. brevimanus, and C. cavipes) in coastal forests?

Terrestrial hermit crabs play a significant role in coastal ecology. For example, as seed dispersers and debris scavengers in coastal forests, they accelerate the decomposition of organic substances. In the Indo-Pacific Ocean, Coenobita rugosus, C. brevimanus, and C. cavipes are the three most common species of terrestrial hermit crab. Because the mechanisms that contribute to the sympatry of these three species of crab have not been identified, this study investigated the three most likely explanations: niche differences, competition, and predation. The results showed that the three species displayed niche differences in terms of seasonal activity, habitat, utilization of shells, and food preference, suggesting that competition for resources is avoided. The habitat of terrestrial hermit crabs in Taiwan is closely associated with that of humans. Our study helps improve our understanding of the ecology of terrestrial hermit crabs and their conservation.

Ecological differentiation facilitates fine-scale coexistence of sexual and asexual Boechera.

Ecological differentiation (ED) between sexual and asexual organisms may permit the maintenance of reproductive polymorphism. Several studies of sexual/asexual ED in plants have shown that the geographic ranges of asexuals extend beyond those of sexuals, often in areas of higher latitude or elevation. But very little is known about ED at fine scales, wherein coexistence of sexuals and asexuals may be permitted by differential niche occupation. We used 149 populations of sexual and apomictic lineages in the genus Boechera (rock cress) collected across a portion of this mustard's vast range. We characterized reproductive mode, ploidy, and species identity or hybrid parentage of each individual, and then used a multipronged statistical approach to (1) identify ED between sexuals and asexuals; (2) investigate the impacts of two confounding factors, polyploidy and hybridization, on ED; and (3) determine the environmental variables underlying ED. We found that sexuals and asexuals are significantly ecologically differentiated across the landscape, despite fine-scale interdigitation of these two reproductive forms. Asexual reproduction was strongly associated with greater disturbance, reduced slope, and greater environmental variability. Although ploidy had little effect on the patterns observed, hybridization has a unique impact on the relationships between asexual reproduction and specific environmental variables. Ecological differentiation along the axes of disturbance, slope, and climatic variability, as well as the effects of heterozygosity, may contribute to the maintenance of sexuality and asexuality across the landscape, ultimately impacting the establishment and spread of asexual lineages.