AbstractThe effect of flooding phase and water quality on the littoral fish species of the Zambezi/Chobe floodplain was assessed between March 2017 and February 2018. Using the similarity percentage analyses (SIMPER), a 61.9% dissimilarity was detected in fish assemblages among the four flooding phases of the Zambezi/Chobe floodplain (rising, peak, recession and low flooding phase). Cichlids (63.1%) were the most dominant taxa during the peak flooding phase while cyprinids were dominant during the rising (40.7%), recession (45.3%) and low flooding phases (40.9%), respectively. Juveniles of the two commercially important species, Oreochromis andersonii and Coptodon rendalli, were among the four abundant species across the four flooding phases of the Zambezi/Chobe floodplain. Higher densities of these two species were in synchrony with the peak flooding phase, characterised by high levels of dissolved oxygen (5.7 ± 1.0 mg/L), neutral pH (7.9) and moderate water temperature (27.6 ± 1.1°C). During the flood recession phase, a severe decline in juvenile of the commercially important species (O. andersonii and C. rendalli) coincided with fish migration off the littoral zone into the main river at a mean size between 70 and 80 mm SL. Generally, the observed variations in the fish species composition during the different stages of flooding might reflect the influence of water quality and water volume to sustain large fish assemblages on the littoral zone of the Zambezi/Chobe floodplain. Any change in the natural flow and reduction in water volume of the Zambezi/Chobe floodplain might negatively affect the recruitment of juvenile fish into adult populations.