To reduce missed detections in LiDAR-based obstacle detection, this paper proposes a dual unmanned surface vessels (USVs) obstacle detection method using the MGNN-DANet template matching framework. Firstly, point cloud templates for each USV are created, and a clustering algorithm extracts suspected targets from the point clouds captured by a single USV. Secondly, a graph neural network model based on the movable virtual nodes is designed, introducing a neighborhood distribution uniformity metric. This model enhances the local point cloud distribution features of the templates and suspected targets through a local sampling strategy. Furthermore, a feature matching model based on double attention is developed, employing self-attention to aggregate the features of the templates and cross-attention to evaluate the similarity between suspected targets and aggregated templates, thereby identifying and locating another USV within the targets detected by each USV. Finally, the deviation between the measured and true positions of one USV is used to correct the point clouds obtained by the other USV, and obstacle positions are annotated through dual-view point cloud clustering. Experimental results show that, compared to single USV detection methods, the proposed method reduces the missed detection rate of maritime obstacles by 7.88% to 14.69%.