Negative Effects Of Inbreeding Research Articles

Genetic susceptibility to infectious disease in East African Shorthorn Zebu: a genome-wide analysis of the effect of heterozygosity and exotic introgression.

BackgroundPositive multi-locus heterozygosity-fitness correlations have been observed in a number of natural populations. They have been explained by the correlation between heterozygosity and inbreeding, and the negative effect of inbreeding on fitness (inbreeding depression). Exotic introgression in a locally adapted population has also been found to reduce fitness (outbreeding depression) through the breaking-up of co-adapted genes, or the introduction of non-locally adapted gene variants.In this study we examined the inter-relationships between genome-wide heterozygosity, introgression, and death or illness as a result of infectious disease in a sample of calves from an indigenous population of East African Shorthorn Zebu (crossbred Bos taurus x Bos indicus) in western Kenya. These calves were observed from birth to one year of age as part of the Infectious Disease in East African Livestock (IDEAL) project. Some of the calves were found to be genetic hybrids, resulting from the recent introgression of European cattle breed(s) into the indigenous population. European cattle are known to be less well adapted to the infectious diseases present in East Africa. If death and illness as a result of infectious disease have a genetic basis within the population, we would expect both a negative association of these outcomes with introgression and a positive association with heterozygosity.ResultsIn this indigenous livestock population we observed negative associations between heterozygosity and both death and illness as a result of infectious disease and a positive association between European taurine introgression and episodes of clinical illness.ConclusionWe observe the effects of both inbreeding and outbreeding depression in the East African Shorthorn Zebu, and therefore find evidence of a genetic component to vulnerability to infectious disease. These results indicate that the significant burden of infectious disease in this population could, in principle, be reduced by altered breeding practices.

A Test of the ‘Genetic Rescue’ Technique Using Bottlenecked Donor Populations of Drosophila melanogaster

We produced replicated experimental lines of inbred fruit flies Drosophila melanogaster to test the effects of crossing different bottlenecked populations as a method of ‘genetic rescue’ for endangered species lacking outbred donor populations. Two strains differing in the origin of the founders were maintained as isolated populations in a laboratory environment. After two generations of controlled full-sib matings, the resulting inbred fruit flies had significantly reduced breeding success and survival rates. However, crosses between the two bottlenecked strains reversed the effects of inbreeding and led to increases in breeding success and survival that persisted into the second generation of hybrid offspring. In contrast, crosses within each strain (but between different replicate lines) resulted in only slight improvements in some fitness components, and this positive trend was reversed in the second generation. This experiment highlights the potential value of translocations between different inbred populations of endangered species as a tool to mitigate the negative effects of inbreeding, but this benefit may depend upon the origin of the populations. Our results also confirm the importance of maintaining adequate levels of genetic variation within populations and that severely bottlenecked populations should not be discounted as possible donors in genetic rescue programs for endangered species.

Efeito da endogamia sobre características morfométricas em cavalosda raça Mangalarga Marchador

Estimou-se o coeficiente de endogamia e avaliou-se seu efeito sobre características morfométricas dos animais em um criatório no norte de Minas Gerais. As características estudadas foram alturas da cernelha e da garupa, comprimentos da cabeça, do pescoço, do dorso-lombo, da garupa e do corpo, larguras do peito e da garupa. O arquivo continha 2186 informações de parentesco de animais do arquivo zootécnico da fazenda, desde o início da formação da raça, 1951, até o ano de 2006. Calculou-se o coeficiente de endogamia (F) e avaliou-se seu efeito por meio de regressão linear simples sobre as medidas morfométricas. Do total de animais, 27,6% mostraram-se endogâmicos, sendo o F médio da população igual a 1,4%. Considerando-se apenas os animais endogâmicos, a consanguinidade média atingiu 5,3%, mínimo de 0,1 e máximo de 28,1%. Não se verificaram efeitos negativos da endogamia sobre as características morfométricas, exceto para largura da garupa, em que se observou que para cada 10% de acréscimo de F houve aumento de 0,576cm na largura da garupa. Possivelmente, devido ao baixo valor encontrado, a endogamia não influenciou as demais características avaliadas.

Evidence of inbreeding depression but not inbreeding avoidance in a natural house sparrow population

Inbreeding is common in small and threatened populations and often has a negative effect on individual fitness and genetic diversity. Thus, inbreeding can be an important factor affecting the persistence of small populations. In this study, we investigated the effects of inbreeding on fitness in a small, wild population of house sparrows (Passer domesticus) on the island of Aldra, Norway. The population was founded in 1998 by four individuals (one female and three males). After the founder event, the adult population rapidly increased to about 30 individuals in 2001. At the same time, the mean inbreeding coefficient among adults increased from 0 to 0.04 by 2001 and thereafter fluctuated between 0.06 and 0.10, indicating a highly inbred population. We found a negative effect of inbreeding on lifetime reproductive success, which seemed to be mainly due to an effect of inbreeding on annual reproductive success. This resulted in selection against inbred females. However, the negative effect of inbreeding was less strong in males, suggesting that selection against inbred individuals is at least partly sex specific. To examine whether individuals avoided breeding with close relatives, we compared observed inbreeding and kinship coefficients in the population with those obtained from simulations of random mating. We found no significant differences between the two, indicating weak or absent inbreeding avoidance. We conclude that there was inbreeding depression in our population. Despite this, birds did not seem to actively avoid mating with close relatives, perhaps as a consequence of constraints on mating possibilities in such a small population.

Inbreeding rate and genetic structure of cat populations in Poland

The objective of the study was to analyze effective population size and inbreeding level in populations of cat breeds registered in the Polish Studbook. The Association of Purebred Cat Breeders in Poland provided access to pedigrees of 26725 cats from seven breeds. The most frequent breed was Persian, however increasing tendency in numbers of registered animals from other breeds was recorded in later years. Although the percentage of inbred individuals was increasing over time, mating of close relatives was avoided by most of the breeders, and the average inbreeding coefficient exceeded 5% only for Siberian and Russian breeds. Current analysis suggests that the Polish pedigree cat populations are not threatened by negative effects of inbreeding.

No evidence for increased extinction proneness with decreasing effective population size in a parasitoid with complementary sex determination and fertile diploid males.

BackgroundIn species with single locus complementary sex determination (sl-CSD), the sex of individuals depends on their genotype at one single locus with multiple alleles. Haploid individuals are always males. Diploid individuals are females when heterozygous, but males when homozygous at the sex-determining locus. Diploid males are typically unviable or effectively sterile, hence imposing a genetic load on populations. Diploid males are produced from matings of partners that share an allele at the sex-determining locus. The lower the allelic diversity at the sex-determining locus, the more diploid males are produced, ultimately impairing the growth of populations and jeopardizing their persistence. The gregarious endoparasitoid wasp Cotesia glomerata is one of only two known species with sl-CSD and fertile diploid males.ResultsBy manipulating the relatedness of the founders, we established replicated experimental populations of the parasitoid C. glomerata differing in their genetic effective size, and thus in allelic richness at the sex-determining locus and in the expected magnitude of diploid male production. Our long-term survey of population welfare and persistence did not provide evidence for increased proneness to population extinction with decreasing initial genetic effective population size. Most recorded surrogates of fitness nevertheless decayed over time and most experimental populations eventually went extinct, suggesting that the negative effects of inbreeding outweighed any premium from the fertility of diploid males.ConclusionsThe fertility of diploid males may have evolved as an adaptation prompted by the risk of extinction looming over small isolated populations of species with sl-CSD. However, fertility of diploid males does not negate the costs imposed by their production, and although it may temporarily stave off extinction, it is not sufficient to eradicate the negative effects of inbreeding.

Analysis of the effects of early nutritional environmenton inbreeding depression in Drosophila melanogaster

The impact of nutritional deficiencies early in life in determining life-history variation in organisms is well recognized. The negative effects of inbreeding on fitness are also well known. Contrary to studies on vertebrates, studies on invertebrates are not consistent with the observation that inbreeding compromises resistance to parasites and pathogens. In this study, we investigated the effect of early nutrition on the magnitude of inbreeding depression in development time, adult body size and adult resistance to the bacterium Serratia marcescens in Drosophila melanogaster. We found that early nutritional environment had no effect on the magnitude of inbreeding depression in development time or adult body size but may have played a small role in adult resistance to the bacterial infection. Estimates of heritabilities for development time under the poor nutritional environment were larger than those measured under the standard nutritional conditions.

Similarity of contemporary and historical gene flow among highly fragmented populations of an endangered rattlesnake

Populations of endangered taxa in recently fragmented habitats often show high levels of genetic structure, but the role that contemporary versus historical processes play in generating this pattern is unclear. The eastern massasauga rattlesnake (Sistrurus c. catenatus) is an endangered snake that presently occurs throughout central and eastern North America in a series of populations that are isolated because of habitat fragmentation and destruction. Here, we use data from 19 species-specific microsatellite DNA loci to assess the levels of genetic differentiation, genetic effective population size, and contemporary and historical levels of gene flow for 19 populations sampled across the range of this snake. Eastern massasaugas display high levels of genetic differentiation (overall θ(Fst) = 0.21) and a Bayesian clustering method indicates that each population represents a unique genetic cluster even at regional spatial scales. There is a twofold variation in genetically effective population sizes but little genetic evidence that populations have undergone recent or historical declines in size. Finally, both contemporary and historical migration rates among populations were low and similar in magnitude even for populations located <7 km apart. A test of alternate models of population history strongly favours a model of long-term drift-migration equilibrium over a recent isolation drift-only model. These results suggest that recent habitat fragmentation has had little effect on the genetic characteristics of these snakes, but rather that this species has historically existed in small isolated populations that may be resistant to the long-term negative effects of inbreeding.

Heterozygosity of the Yellowstone wolves

Heterozygosity of the Yellowstone wolves

Inbred women in a small and isolated Swiss village have fewer children

Despite overwhelming evidence for a negative effect of inbreeding on fitness in plants and nonhuman animals, the exact nature of its effect in humans remains subject to debate. To obtain a better understanding of the effects of inbreeding on reproductive success in humans, we reconstructed the genealogies of the current inhabitants of a small and isolated Swiss village and used these to estimate the level of inbreeding of both members of all married couples, as well as their relatedness (i.e. the level of inbreeding of their offspring). Although there was no effect of parental relatedness on the number of children a couple had, we found that inbred mothers, but not inbred fathers, had significantly fewer children. Thus, although related couples did not have fewer children themselves, their inbred daughters did leave them with fewer grandchildren. Thereby, we provide evidence for the existence of inbreeding depression in human fertility, also in relatively outbred and egalitarian communities.

Inbreeding depression of sexually selected traits and attractiveness in the zebra finch

An underexploited approach to study condition dependence of sexually selected ornaments is to use inbreeding to manipulate individual genetic quality. Because of differences in genetic architecture, sexually selected traits are expected to suffer stronger inbreeding depression than morphological traits. We used full-sib mating to investigate the effects of inbreeding on viability, attractiveness, morphology and potentially secondary sexual traits in male and female zebra finches, Taeniopygia guttata. Unexpectedly, the genetic load from lethal alleles (leading to early mortality) was low. In males, we found strong negative effects of inbreeding on song rate, beak colour, body size and choice chamber attractiveness, whereas body condition, fat deposition, song structure and plumage ornaments were unaffected. In females, beak colour, body size, fat deposition and choice chamber behaviour showed significant inbreeding depression. These results indicate that some but not all adult phenotypes are affected by inbreeding, most probably because of the homozygous expression of slightly deleterious mutations. Our findings complement alternative approaches to study the condition dependence of traits that may be relevant in mate choice or competition.

Comparison of contemporary mating patterns in continuous and fragmented Eucalyptus globulus native forests

While habitat fragmentation is a central issue in forest conservation studies in the face of broad-scale anthropogenic changes to the environment, its effects on contemporary mating patterns remain controversial. This is partly because of the inherent variation in mating patterns which may exist within species and the fact that few studies have replication at the landscape level. To study the effect of forest fragmentation on contemporary mating patterns, including effective pollen dispersal, we compared four native populations of the Australian forest tree, Eucalyptus globulus. We used six microsatellite markers to genotype 1289 open-pollinated offspring from paired fragmented and continuous populations on the island of Tasmania and in Victoria on mainland Australia. The mating patterns in the two continuous populations were similar, despite large differences in population density. In contrast, the two fragmented populations were variable and idiosyncratic in their mating patterns, particularly in their pollen dispersal kernels. The continuous populations showed relatively high outcrossing rates (86-89%) and low correlated paternity (0.03-0.06) compared with the fragmented populations (65-79% and 0.12-0.20 respectively). A greater proportion of trees contributed to reproduction in the fragmented (de/d>or= 0.5) compared with the continuous populations (de/d = 0.03-0.04). Despite significant inbreeding in the offspring of the fragmented populations, there was little evidence of loss of genetic diversity. It is argued that enhanced medium- and long-distance dispersal in fragmented landscapes may act to partly buffer the remnant populations from the negative effects of inbreeding and drift.

Invited Review: Research contributions from seventy-five years of breeding Line 1 Hereford cattle at Miles City, Montana1,2

For 75 yr, Line 1 Hereford cattle have been at the forefront of beef cattle breeding research. The goal of this review is to provide an overview of scientific contributions made using the Line 1 Hereford population. It was initially developed as contribution to a western regional program from which beef producers were envisioned to use heterosis by crossing selected inbred lines. Whereas this vision was never fulfilled, being largely supplanted by crossbreeding, Line 1 has had a profound influence on beef cattle breeding research and the Hereford breed. For more than 60 yr, Hereford breeders and commercial beef producers have purchased Line 1 Hereford germplasm for use in their herds. By example, Line 1 illustrates a successful line-breeding program through which a 39% additive relationship to the founding sire has been maintained over more than 18 generations. Procedures for performance testing beef cattle can be traced to original research with Line 1. Data from Line 1 contributed to the first estimates of heritability and genetic correlation for beef cattle. Work with Line 1 has also contributed greatly to the understanding of maternal genetic effects in beef cattle. Diallel crossing with other inbred lines provided early estimates of heterosis for beef cattle, complimented by the later observation that heterosis resulted in complete recovery of the accumulated negative effects of inbreeding. After exchanges of germplasm with the Northern Montana Agricultural Experiment Station at Havre and the Brooksville Beef Cattle Research Station in Florida, pioneering comprehensive evaluations of genotype x environment interaction were conducted. Breeding practices implemented by USDA Agricultural Research Service at Miles City make Line 1 the longest running selection experiment using beef cattle worldwide. This long-term database has provided an exceptional resource for prototype evaluations of procedures for national cattle evaluation, and the results make up an integral part of the foundation of modern-day genetic evaluation programs. Having used DNA from Line 1 in the development of a bacterial artificial chromosome library and the bovine genome sequence, Line 1 Hereford cattle are uniquely positioned for continued contributions in future research.

No evidence that female bruchid beetles, Callosobruchus maculatus, use remating to reduce costs of inbreeding

Despite the often dramatic negative effects of inbreeding on offspring fitness, matings between closely related individuals sometimes occur. This may be because females cannot reliably recognize related males before mating with them. As an alternative to precopulatory choice, polyandrous females may avoid inbreeding through postcopulatory mechanisms if they can assess mate relatedness during or after copulation. These mechanisms include increasing remating propensity and decreasing rate of offspring production in response to incestuous matings. Stored product pests, such as the bruchid beetle Callosobruchus maculatus, have an ecology that is likely to expose them to frequent risks of inbreeding when a small number of females found a new population on a previously uninfested store of beans. Using this species, we show that inbreeding has negative effects on offspring viability but that females do not appear to discriminate between brothers and unrelated males prior to mating. Furthermore, females that first mated with brothers did not increase their remating propensity or decrease their rate of offspring production relative to females that first mated with unrelated males. Our findings suggest that the costs of inbreeding have not been sufficient to drive the evolution of mating behaviour as a mechanism of inbreeding avoidance in C. maculatus.

Part I: Osteology as a Means of Assessing Florida Panther Health

Conservation efforts to reverse the negative effects of inbreeding in an isolated population of Florida panthers (Puma concolor coryi) resulted in the release of eight Texas females into Florida in 1995 (Seal 1994; Johnson et al. 1998). Since that time, Florida panthers have shown increased productivity, range expansion, and the reversal of a suite of deleterious morphological and physiological effects of inbreeding. (Land et al. 2005, Pimm et al. 2006). Previously described bone pathologies in the Florida panther may result from a compromised immune system due to inbreeding, poor health related to diet and nutrition, or the presence of previously undetected pathogenic diseases. We examine the current collection of 140 post-cranial skeletons to determine the frequency of trauma, infection, arthritis, and incidence of Harris Lines. Harris lines, visible from X-rays of long bones, represent a cessation of growth due to a major episode of starvation or illness. We compare the population born before and after 1995 to examine changes over a time line that includes genetic, biomedical, and management interventions. Our data support earlier findings that there are idiopathic bone pathologies that exist in the Florida population, and we explore possible causes. Multivariate analysis reveals that Harris Lines and osteopathologies increase with age, and those pathologies affect males more than females, and both show increases after two years of age. There is a reduction in the number and severity of osteopathologies in panthers born after 1995; however, the demographics of our population (as represented in the museum sample) have shifted from an “aged” population to one that includes a disproportionately large number of young animals (&lt;2 years old). It is likely that more than one biological process is operating to produce this result, and the study of osteological material alone cannot provide definitive diagnoses. Advanced studies in the pathology of human arthritis offer intriguing insights, and we expect at least some of their findings to have application in wildlife disease studies. Our results, together with the rich resource of archival material, leads to new cooperative research opportunities between museums, wildlife biologists, and wildlife veterinarians in the efforts to improve the conservation status of Florida panthers.

PREVENTION OF URETHRAL BLOCKAGE FOLLOWING SEMEN COLLECTION IN TWO SPECIES OF LEMUR, VARECIA VARIEGATA VARIEGATA AND LEMUR CATTA

Lemurs are a diverse group of primates comprised of five families, all of which are found only on Madagascar and the Comoro Islands. Of the 60 known species, 17 are endangered and 5 of these are considered critically endangered. The effects of inbreeding on population health and viability have been well described; though negative inbreeding effects can be ameliorated through the introduction of new genetic material. Introduction of new individuals into a population can be extremely challenging because of the highly social nature of lemurs. Semen collection in lemur species is notoriously challenging, as the ejaculate forms a coagulum. During normal breeding, the coagulum forms a copulatory plug in the female. However, this coagulum can present a life-threatening situation when retained in the urethra abnormally following electroejaculation. This study investigates the use of ascorbic acid in preventing urethral blockage in two lemur species during semen collection, demonstrates successful collection of semen by electroejaculation from two species of lemur during the breeding season, and discusses removal of urethral plugs subsequent to semen collection. Semen was collected successfully from all animals. Urethral plugs formed during each collection and were abnormally retained in 2/11 collections. Both plugs were successfully and immediately removed with the use of retropulsion through a urethral catheter. Although the results of this study are encouraging, more investigation is required to establish whether or not this procedure can be safely performed in the field.

Negative inbreeding effects in tree fruit breeding: self-compatibility transmission in almond

Inbreeding depression has been observed in most fruit trees, negatively affecting the offspring of related parents. This problem is steadily increasing due to the repeated utilization of parents in breeding programmes. In almond, self-compatibility transmission from 'Tuono' to its offspring remains partially unexplained due to deviations from the expected genotype ratios. In order to test if these deviations could be due to inbreeding, the S-genotypes of the seedlings of four almond families, 'Tuono' (S(1)S(f )) x 'Ferragnès' (S(1)S(3)), 'Tuono' (S(1)S(f)) x 'Ferralise' (S(1)S(3)) and reciprocal crosses were studied. The S-genotype determination of each seedling by separation of stylar S-RNases and by S-allele-specific PCR amplification gave identical results. The ratio of S-genotypes of the family 'Tuono' x 'Ferralise' was the one least adjusted to the expected 1:1 ratio, because the number of self-compatible seedlings (S(f)S(3)) was less than a half the number of self-incompatible ones (S(1)S(3)). A mechanism acting against inbreeding would favour cross-breeding in the following generation to increase heterozygosity. This fact stresses the need to avoid crosses between related parents in fruit breeding programmes.

Inbreeding and outbreeding reduces cocoon production in the earthworm Eisenia andrei

Earthworms are animals with reciprocal insemination. Eisenia andrei Bouché, 1972 is a simultaneous hermaphroditic earthworm that lives in manure heaps at high densities, with low opportunities of dispersal, thus very close inbreeding is expected. As the negative effects of inbreeding and outbreeding may be severe, we studied whether E. andrei adjusts its breeding effort according to the degree of mate relatedness. To test this, we performed laboratory experiments in which earthworms were mated with their sibs and with non-sibs from the same population and no-sibs from a geographically isolated population. Inbreeding and outbreeding matings caused a strong reduction of cocoon production, especially in genetic lines with high reproductive rates. As far as we know, this is the first study that indicates reproductive adjustment in earthworms according to the genetic divergence of their partners. Optimal outbreeding should be considered a crucial point in the management of breeding populations for applied purposes.

Reproductive ecology of three endangered African violet (Saintpaulia H. Wendl.) species in the East Usambara Mountains, Tanzania

AbstractKnowledge of the reproductive biology of endangered plants is essential for their effective conservation. It also provides important information for understanding the evolutionary processes that affect speciation, thus helping the definition of proper units for conservation in endangered plants with problematic taxonomy. We studied the reproductive potential and possibility for hybridization in the endangered genus Saintpaulia (Gesneriaceae) by examining flowering phenology, flower and seed production and pollination of three sympatric cross‐compatible Saintpaulia species in the East Usambara Mts., Tanzania. The synchrony observed in flowering in S. confusa and S. difficilis may enable hybridization between these two species, whereas partial phenological separation may contribute to the integrity of S. grotei. Although the level of flower abortion is high in S. confusa, each pollinated flower yields about 1000 seeds. Saintpaulia confusa produces fruits following both self‐ and cross‐pollination but spontaneous self‐pollination seems not to occur. Thus, seed production depends on sufficient pollinator service. Floral heteromorphy (i.e. enantiostyly) and bee pollination are likely to further enhance cross‐pollination, suggesting that the genus predominantly outcrosses. Thus, Saintpaulia populations are likely to suffer from negative effects of inbreeding if they become small and isolated.

Inbreeding avoidance through non-random mating in sticklebacks

Negative effects of inbreeding are well documented in a wide range of animal taxa. Hatching success and survival of inbred offspring is reduced in many species and inbred progeny are often less attractive to potential mates. Thus, individuals should avoid mating with close kin. However, experimental evidence for inbreeding avoidance through non-random mating in vertebrates is scarce. Here, we show that gravid female three-spined sticklebacks (Gasterosteus aculeatus) when given the choice between a courting familiar brother and a courting unfamiliar non-sib prefer to mate with the non-sib and thus avoid the disadvantages of incest. We controlled for differences in males' body size and red intensity of nuptial coloration. Thus, females adjust their courting behaviour to the risk of inbreeding.