To understand the distribution of soil elemental concentrations and their potential sources of trace metal contamination in the high-conservation Nee Soon freshwater swamp forest in Singapore, we analyzed samples from 227 surface and 35 subsurface (auger profiles) locations. Our assessment involved distribution maps, principle component analysis, cluster analysis, and correlation analysis of element concentrations determined from a mixed acid digestion and measurement on an ICP-MS. We found a distinct zonation in the distribution of several elements (Ba, Cr, Cu, Fe, Mn, Pb, Sr, Ti, V, and Zn) between the upper and lower catchment that gives an erroneous notion of widespread contamination in the lower catchment. We believe this zonation is natural, likely related to differences in the underlying geology. However, Cu, Pb, and Sb concentrations were greatly enriched by anthropogenic activities on military training lands in the lower catchment, firing ranges in particular. Barium, Sr, and Zn also appear to be enriched in the lower part of the catchment, possibly from anthropogenic activities including military activity and roads. Although soils in the catchment are not highly contaminated, isolated areas with high concentrations of Cu, Pb and Sb may warrant management attention given the sensitive nature of the urban forest, which includes the last remaining fresh water swamp forest in Singapore.