Objectives: Homologous recombination deficiency (HRD) is defined as a pathogenic mutation in BRCA1/2 and/or a positive Genomic Instability Status score (GIS). The GIS assay is a custom hybridization capture panel that targets SNPs distributed across the genome. Patients who have ovarian cancer with HRD may benefit from treatment with therapies that exploit HR deficiency. To date, the majority of HRD studies in ovarian cancer have focused on high-grade serous carcinoma and have not directly compared the subtypes or surgical samples (i.e., biopsy or resection). Here, we compared the rate of HRD across chemotherapy response scores (CRS 1-no or minimal response, 2-some response, 3-complete or near-complete response), as well as across different ovarian cancer subtypes. Methods: Pathology reports were reviewed for a consecutive set of deidentified ovarian cancer samples analyzed between September 9, 2020, and January 8, 2021. BRCA1/2 mutation analysis captured both sequence variants and large rearrangements. Scores ≥42 were considered GIS-status positive. Descriptive statistics were used for data presentation. Results: Of 1351 patients, there were 1165 resections, 141 biopsies, and 45 cytology specimens. Total 327 resections were known to be post-neoadjuvant chemotherapy; of these, 274 were given a CRS (CRS 1, n=87; CRS 2, n=150; CRS 3, n=37). HRD was observed at a higher rate in tumors with CRS 2 (33.9%) and CRS 3 (50.0%), compared to those with CRS 1 (21.3%). Low tumor DNA percentage was observed in a higher percentage of post-neoadjuvant resection samples with CRS 2 (23.3%) and CRS 3 (21.6%), compared to those with CRS 1 (5.7%). As a result, low tumor DNA percentages in post-neoadjuvant resection samples with CRS 2-3 led to a 3- to 4-fold higher inconclusive rate (test failure) compared to resection samples with CRS 1, diagnostic biopsies, and resections without neoadjuvant chemotherapy. Mixed histology carcinomas had the highest percentage of HRD, followed by high-grade serous carcinoma and carcinosarcoma (Table 1). HRD was detected in all major carcinoma subtypes; however, endometrioid, mucinous, low-grade serous, and clear cell carcinoma had comparatively low rates of HRD. Conclusions: These data suggest that HRD testing is appropriate for all major ovarian cancer subtypes. Patients with certain tumor characteristics (e.g., CRS 2-3, mixed histology, high-grade serous carcinoma, and carcinosarcoma) have higher rates of HRD. Importantly, due to the relatively low tumor DNA percentage in post-neoadjuvant chemotherapy resections with CRS 2-3, submission of pre-chemotherapy biopsies is optimal. Objectives: Homologous recombination deficiency (HRD) is defined as a pathogenic mutation in BRCA1/2 and/or a positive Genomic Instability Status score (GIS). The GIS assay is a custom hybridization capture panel that targets SNPs distributed across the genome. Patients who have ovarian cancer with HRD may benefit from treatment with therapies that exploit HR deficiency. To date, the majority of HRD studies in ovarian cancer have focused on high-grade serous carcinoma and have not directly compared the subtypes or surgical samples (i.e., biopsy or resection). Here, we compared the rate of HRD across chemotherapy response scores (CRS 1-no or minimal response, 2-some response, 3-complete or near-complete response), as well as across different ovarian cancer subtypes. Methods: Pathology reports were reviewed for a consecutive set of deidentified ovarian cancer samples analyzed between September 9, 2020, and January 8, 2021. BRCA1/2 mutation analysis captured both sequence variants and large rearrangements. Scores ≥42 were considered GIS-status positive. Descriptive statistics were used for data presentation. Results: Of 1351 patients, there were 1165 resections, 141 biopsies, and 45 cytology specimens. Total 327 resections were known to be post-neoadjuvant chemotherapy; of these, 274 were given a CRS (CRS 1, n=87; CRS 2, n=150; CRS 3, n=37). HRD was observed at a higher rate in tumors with CRS 2 (33.9%) and CRS 3 (50.0%), compared to those with CRS 1 (21.3%). Low tumor DNA percentage was observed in a higher percentage of post-neoadjuvant resection samples with CRS 2 (23.3%) and CRS 3 (21.6%), compared to those with CRS 1 (5.7%). As a result, low tumor DNA percentages in post-neoadjuvant resection samples with CRS 2-3 led to a 3- to 4-fold higher inconclusive rate (test failure) compared to resection samples with CRS 1, diagnostic biopsies, and resections without neoadjuvant chemotherapy. Mixed histology carcinomas had the highest percentage of HRD, followed by high-grade serous carcinoma and carcinosarcoma (Table 1). HRD was detected in all major carcinoma subtypes; however, endometrioid, mucinous, low-grade serous, and clear cell carcinoma had comparatively low rates of HRD. Conclusions: These data suggest that HRD testing is appropriate for all major ovarian cancer subtypes. Patients with certain tumor characteristics (e.g., CRS 2-3, mixed histology, high-grade serous carcinoma, and carcinosarcoma) have higher rates of HRD. Importantly, due to the relatively low tumor DNA percentage in post-neoadjuvant chemotherapy resections with CRS 2-3, submission of pre-chemotherapy biopsies is optimal.
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