Natural Light Regimes Research Articles

MoonShine: A software‐hardware system for simulating moonlight ground illuminance and re‐creating artificial moonlight cycles in a laboratory environment

Abstract Moonlight exerts profound ecological, behavioural and physiological effects on animals. However, lunar cycles are characterised by complex changes in the illuminance and timing of illumination, making it challenging to re‐create and manipulate moonlight cycles in the laboratory using artificial lights. As a result, ecological experiments on the effects of moonlight cycles are uncommon, and existing studies often oversimplify the re‐creation of moonlight. This limitation extends to experimental studies of the effects of light pollution on nocturnal animals, which often fail to adequately represent natural nocturnal light. To address the lack of open‐source solutions for re‐creating and manipulating moonlight cycles, we developed the software‐hardware system MoonShine. This has two components: (1) MoonShineR, an R package with additional R scripts, which predicts moonlight ground illuminance (in lux) at defined intervals, for a specified location and time range; (2) MoonShineP, a Python program running on a Raspberry Pi computer, which uses the illuminance values from MoonShineR to gradually dim and brighten a diffused array of individually addressable LEDs, allowing realistic natural light regimes to be re‐created in a laboratory environment. MoonShine includes multiple features to re‐create and manipulate light cycles. It supports colour‐shifting of the LED light (by adjustment of RGBW intensity ratios) to approximate the spectrum of natural moonlight, and to mimic habitat‐specific conditions or certain types of light pollution. We tested the accuracy of MoonShineR's moonlight illuminance predictions by comparison to field radiometer measurements at equatorial and temperate latitude sites. We demonstrated the accuracy of MoonShineP's moonlight re‐creation, by comparing its measured LED illuminances to the intended values and its measured LED spectrum against natural moonlight. MoonShine allows researchers to re‐create a range of natural nocturnal lighting scenarios in the laboratory. It can be used to re‐create full natural moonlight cycles with a relatively realistic spectral composition, generate manipulated moonlight schedules, or simulate light pollution. Furthermore, the moonlight illuminance predicted by MoonShineR is useful for field ecologists who require moonlight as a quantitative model predictor. Finally, to provide laboratory‐housed animals with full diurnal light cycles, MoonShine allows researchers to re‐create natural twilight and sunlight regimes.

Urban shading and artificial light at night alter natural light regimes and affect marine intertidal assemblages

Urban development in many coastal cities has resulted in altered natural light regimes, with many coastal habitats being artificially shaded during the daytime by built structures such as seawalls and piers, while artificial light emitted from buildings and associated infrastructure creates pollution at night. As a result, these habitats may experience changes to community structure and impacts on key ecological processes such as grazing. This study investigated how changes to light regimes affect the abundance of grazers on natural and artificial intertidal habitats in Sydney Harbour, Australia. We also examined whether differences in patterns of responses to shading or artificial light at night (ALAN) varied across different areas within the Harbour, characterised by different overall levels of urbanisation. As predicted, light intensity was greater during the daytime on rocky shores than seawalls at the more urbanised sites of the harbour. We found a negative relationship between the abundance of grazers and increasing light during the daytime on rocky shores (inner harbour) and seawalls (outer harbour). We found similar patterns at night on rocky shores, with a negative relationship between the abundance of grazers and light. However, on seawalls, grazer abundances increased with increasing night-time lux levels, but this was mainly driven by one site. Overall, we found the opposite patterns for algal cover. Our findings corroborate those of previous studies that found that urbanisation can significantly affect natural light cycles, with consequences to ecological communities.

ABNORMALITIES IN NATURAL LIGHT REGIMEN AS TRIGGER OF TUMOR GROWTH

One of the regulators of physiological rhythm patterns in humans and animals is the change in the circadian cycle implying the day-night alternation. Exposure to light at night has been found to be directly related to serious behavioral problems, as well as to the health state and the development of malignant neoplasms. Epidemiological studies show an increased risk of breast and colon cancer in night shift workers and a reduced cancer risk found in blind women. Currently, a fairly large number of the population is exposed to light pollution (light at night). Therefore experimental studies, revealing the role of abnormalities in the natural light regime in carcinogenesis, become topical.

ВЛИЯНИЕ НИЗКОИНТЕНСИВНОГО ЭЛЕКТОРМАГНИТНОГО ИЗЛУЧЕНИЯ КРАЙНЕ ВЫСОКОЙ ЧАСТОТЫ НА ПОКАЗАТЕЛИ ТКАНЕВОГО ОКИСЛИТЕЛЬНОГО МЕТАБОЛИЗМА

The paper considers the indicators of tissue oxidative in rats after 10-fold exposure to low-intensity electromagnetic radiation of the millimeter range. The experiment was carried out on 40 mature male rats of the Wistar line weighing 200-220 g, which were kept in a vivarium with a natural light regime. The animals were divided into 2 groups of 20 rats each. The animals in the first group were biological controls and were in normal vivarium conditions, the animals of the second group were exposed to EHF EMR for 10 sessions daily, in the morning. On the 10th day of EHF exposure, tissue fluorescence indicators were recorded by the diagnostic complex “LAZMA MC” (Modification of LAZMA-MC-III, LAZMA, Moscow, Russia). The results of the study showed that rats exposed to 10-fold EHF exposure had an increase in the values of normalized NADH fluorescence amplitudes and an increase in FAD amplitudes by 82.5% (p<0.05) and 42.6% (p<0.05), as well as redox potential - by 36.9% (p<0.05), respectively, compared to with control. These changes indicate that 10-fold exposure to low-intensity EHF EMR causes an increase in the contribution of aerobic metabolism in rats mainly due to oxidative phosphorylation, leads to activation of the respiratory chain. It can be assumed that these changes in oxidative metabolism are determined primarily by the process of adaptation of microcirculatory blood flow to the needs of tissues for nutrients and the removal of metabolites.

Long-term effects of artificial nighttime lighting and trophic complexity on plant biomass and foliar carbon and nitrogen in a grassland community.

The introduction of artificial nighttime lighting due to human settlements and transport networks is increasingly altering the timing, intensity, and spectra of natural light regimes worldwide. Much of the research on the impacts of nighttime light pollution on organisms has focused on animal species. Little is known about the impacts of daylength extension due to outdoor lighting technologies on wild plant communities, despite the fact that plant growth and development are under photoperiodic control. In a five‐year field experiment, artificial ecosystems (“mesocosms”) of grassland communities both alone or in combination with invertebrate herbivores and predators were exposed to light treatments that simulated street lighting technologies (low‐pressure sodium, and light‐emitting diode [LED]‐based white lighting), at ground‐level illuminance. Most of the plant species in the mesocosms did not exhibit changes in biomass accumulation after 5 years of exposure to the light treatments. However, the white LED treatment had a significant negative effect on biomass production in the herbaceous species Lotus pedunculatus. Likewise, the interaction between the white LED treatment and the presence of herbivores significantly reduced the mean shoot/root ratio of the grass species Holcus lanatus. Artificial nighttime lighting had no effect on the foliar carbon or nitrogen in most of the grassland species. Nevertheless, the white LED treatment significantly increased the leaf nitrogen content in Lotus corniculatus in the presence of herbivores. Long‐term exposure to artificial light at night had no general effects on plant biomass responses in experimental grassland communities. However, species‐specific and negative effects of cool white LED lighting at ground‐level illuminance on biomass production and allocation in mixed plant communities are suggested by our findings. Further studies on the impacts of light pollution on biomass accumulation in plant communities are required as these effects could be mediated by different factors, including herbivory, competition, and soil nutrient availability.

Spectrum of artificial light at night drives impact of a diurnal species in insect food web

Artificial light at night (ALAN) has become a profound form of global anthropogenic environmental change differing in from natural light regimes in intensity, duration, distribution and spectra. It is clear that ALAN impacts individual organisms, however, population level effects, particularly of spectral changes, remain poorly understood. Here we exposed experimental multigenerational aphid-parasitoid communities in the field to seven different light spectra at night ranging from 385 to 630 nm and compared responses to a natural day-night light regime. We found that while aphid population growth was initially unaffected by ALAN, parasitoid efficiency declined under most ALAN spectra, leading to reduced top-down control and higher aphid densities. These results differ from those previously found for white light, showing a strong impact on species' daytime performance. This highlights the importance of ALAN spectra when considering their environmental impact. ALAN can have large impacts on the wider ecological community by influencing diurnal species.

Artificial light at night (ALAN) mediates transient spatial aggregation of an ecosystem engineer, the crabNeohelice granulata(Dana, 1851) (Decapoda: Brachyura: Varunidae), under different ecological contexts

AbstractArtificial light at night (ALAN) alters natural light regimes in much of the world. The effect of ALAN has been studied in several organisms, although not so much in crustaceans, especially in adult stages. We evaluated the relationship between different intensities of ALAN and the abundance of burrows, and surface activity of the crab Neohelice granulata (Dana, 1851). The study was conducted in 2016 and 2017, in two salt marshes, San Antonio Oeste and Mar Chiquita, Argentina, both having different ecological contexts. During new-moon nights we counted the number of burrows and crabs on the surface and along a gradient of artificial light caused by street lighting with high-pressure sodium lamps. We found that the number of crabs on the surface increased with light intensity and that crabs were almost exclusively males. In contrast, we found that the number of burrows was not related to light intensity, suggesting that the increase of crabs on the surface was mainly due to an increase in their activity. We considered two main mechanisms causing the increase on surface activity of crabs: 1) an increase in the frequency of emergence and short-distance excursions around their burrow and 2) an increase of mobility with long-distance directional displacement from dark to lit areas. Overall, our observations suggest that the presence of ALAN can modify individual crab behavior (i.e., aggregation) and consequently effects on ecosystem functioning.

Herbivory increases on freshwater plants exposed to artificial light at night

Artificial light at night (ALAN) is recognized as one of the major anthropogenic pollutants jeopardizing biodiversity at a global scale. Few studies have focused on the impacts of nocturnal light on freshwater ecosystems despite their increasing exposure to light pollution worldwide due to human activities along rivers or lakes. By modifying metabolism, the disruption of natural light regime could modify the leaf palatability and affect the plant-herbivore interactions which can partly determine the structure of macrophyte communities. By experimentally mimicking light conditions from sub-urban areas, we measured the effects of low-level light at night on the leaf traits of an aquatic plant, Ceratophyllum demersum, and herbivory by the snail Lymnaea stagnalis, a generalist feeder. We demonstrate that artificial light at night increases the herbivory rate: leaves of C. demersum that had been exposed to ALAN for three months were 1.6 times more consumed by L. stagnalis than control leaves. The increase in C. demersum palatability to the pond snail when plants were exposed to ALAN was not due to a decrease in dry matter content or to a modification of the biomechanical characteristics of the leaves. Because snails have not been exposed to nocturnal light before or during the herbivory experiment, this increase in leaf palatability, is possibly linked to modifications of primary and/or secondary metabolism. Our results suggest that ALAN is a potential key factor affecting ecological processes in aquatic ecosystems such as trophic networks.

Light-induced fluorescence quenching leads to errors in sensor measurements of phytoplankton chlorophyll and phycocyanin

Optical sensors for fluorescence of chlorophyll a (f-Chl a) and phycocyanin (f-PC) are increasingly used as a proxy for biomass of algae and cyanobacteria, respectively. They provide measurements at high-frequency and modest cost. These sensors require site-specific calibration due to a range of interferences. Light intensity affects the fluorescence yield of cyanobacteria and algae through light harvesting regulation mechanisms, but is often neglected as a potential source of error for in-situ f-Chl a and f-PC measurements. We hypothesised that diel light variations would induce significant f-Chl a and f-PC suppression when compared to dark periods. We tested this hypothesis in a controlled experiment using three commercial fluorescence probes which continuously measured f-Chl a and f-PC from a culture of the cyanobacterium Dolichospermum variabilis as well as f-Chl a from a culture of the green alga Ankistrodesmus gracilis in a simulated natural light regime. Under light, all devices showed a significant (p<0.01) suppression of f-Chl a and f-PC compared to measurements in the dark. f-Chl a decreased by up to 79% and f-PC by up to 59% at maximum irradiance compared to dark-adapted periods. Suppression levels were higher during the second phase of the diel cycle (declining light), indicating that quenching is dependent on previous light exposure. Diel variations in light intensity must be considered as a significant source of bias for fluorescence probes used for algal monitoring. This is of high relevance as most monitoring activities take place during daytime and hence f-Chl a and f-PC are likely to be systematically underestimated under bright conditions. Compensation models, design modifications to fluorometers and sampling design are discussed as suitable alternatives to overcome light-induced fluorescence quenching.

MORPHOLOGICAL COMPOSITION OF BLOOD AND BIOCHEMICAL PROCESSES IN THE ORGANISM OF FEMALE RATS F1 UNDER LONG-TERM EXPOSURE OF CITRIC ACID

The paper considers the effect on rats of long-term feeding of an aqueous solution of citric acid (C6H12O6 x H2O, "chemically pure.") in the amount of 8 mg/l. The study was performed on 10 laboratory female rats F1 of the Wistar line, obtained from F0 females. Two groups were set up: control and experimental, 5 animals in each. Animals were under standard conditions with natural light regime day/night, aqueous solutions of citrate, water, and feed received ad libitum. Were determined the morphological composition and biochemical parameters of the blood of female F1 rats. The results of the study indicate the absence of an unfavorable effect of citric acid on red blood cells. Concerning white blood, there is a decrease in the number of leukocytes, which may be due to the development of an adaptive response of the body to citric acid or the inhibition of citric acid's immune response to long-term adaptive action. There is a significant increase in the relative content of eosinophils in females F1, which probably may be due to the action of citric acid. The analysis of the obtained results of blood biochemical parameters indicates a certain tendency to decrease, in terms of control, the content of serum iron, as well as its total and unsaturated Fe-binding capacity. Ferrum saturation of serum transferrin was present at the level of animals in the control group. Analysis of the study results indicates no changes in control in the activity of enzymes: Alkaline phosphatase ALT and AST, also have no statistically significant confirmation of differences in the control group. The level of urea was statistically not significantly higher in terms of control. Thus, long-term watering of citric acid to female rats in the generation F0 and F1 during their physiological and sexual gestation and pregnancy reveal un-favorable effects in female rats F1. However, there was distinguished the adaptive immune-biological response of the animals organism. The immunological response was supported by a decrease in the number of leukocytes and a significant increase in the relative content of eosinophils. The results of biochemical studies of serum indicate the absence of statistically significant differences in animals of the control group.

Effect of photoperiod and light intensity on learning ability and memory formation of the pond snail Lymnaea stagnalis

Natural light is regarded as a key regulator of biological systems and typically serves as a Zeitgeber for biological rhythms. As a natural abiotic factor, it is recognized to regulate multiple behavioral and physiological processes in animals. Disruption of the natural light regime due to light pollution may result in significant effects on animal learning and memory development. Here, we investigated whether sensitivity to various photoperiods or light intensities had an impact on intermediate-term memory (ITM) and long-term memory (LTM) formation in the pond snail Lymnaea stagnalis. We also investigated the change in the gene expression level of molluscan insulin-related peptide II (MIP II) is response to the given light treatments. The results show that the best light condition for proper LTM formation is exposure to a short day (8 h light) and low light intensity (1 and 10 lx). Moreover, the more extreme light conditions (16 h and 24 h light) prevent the formation of both ITM and LTM. We found no change in MIP II expression in any of the light treatments, which may indicate that MIP II is not directly involved in the operant conditioning used here, even though it is known to be involved in learning. The finding that snails did not learn in complete darkness indicates that light is a necessary factor for proper learning and memory formation. Furthermore, dim light enhances both ITM and LTM formation, which suggests that there is an optimum since both no light and too bright light prevented learning and memory. Our findings suggest that the upsurge of artificial day length and/or night light intensity may also negatively impact memory consolidation in the wild.

Artificial light at night at the terrestrial-aquatic interface: Effects on predators and fluxes of insect prey.

The outcomes of species interactions–such as those between predators and prey–increasingly depend on environmental conditions that are modified by human activities. Light is among the most fundamental environmental parameters, and humans have dramatically altered natural light regimes across much of the globe through the addition of artificial light at night (ALAN). The consequences for species interactions, communities and ecosystems are just beginning to be understood. Here we present findings from a replicated field experiment that simulated over-the-water lighting in the littoral zone of a small lake. We evaluated responses by emergent aquatic insects and terrestrial invertebrate communities, and riparian predators (tetragnathid spiders). On average ALAN plots had 51% more spiders than control plots that were not illuminated. Mean individual spider body mass was greater in ALAN plots relative to controls, an effect that was strongly sex-dependent; mean male body mass was 34% greater in ALAN plots while female body mass was 176% greater. The average number of prey items captured in spider webs was 139% greater on ALAN mesocosms, an effect attributed to emergent aquatic insects. Non-metric multidimensional scaling and a multiple response permutation procedure revealed significantly different invertebrate communities captured in pan traps positioned in ALAN plots and controls. Control plots had taxonomic-diversity values (as H’) that were 58% greater than ALAN plots, and communities that were 83% more-even. We attribute these differences to the aquatic family Caenidae which was the dominant family across both light treatments, but was 818% more abundant in ALAN plots. Our findings show that when ALAN is located in close proximity to freshwater it can concentrate fluxes of emergent aquatic insects, and that terrestrial predators in the littoral zone can compound this effect and intercept resource flows, preventing them from entering the terrestrial realm.

First Report of Target Spot on Tomato Caused by Corynespora cassiicola in Mauritius.

Tomatoes (Solanum lycopersicum) represent one of the most frequently consumed vegetables in Mauritius after potatoes and onions. The value of the tomato industry is estimated to be around Rs 300 M in Mauritius, with an annual production of 18,376 t over an area of 1365 ha. (Cheung Kai Suet 2019). In August 2019, disease surveillance was conducted in the tomato cv. 'Elipida' grown in the greenhouse situated at Camp Thorel (eastern part of Mauritius), a super-humid zone where the prevailing temperature and humidity were 30°C and 70% respectively. The symptoms included numerous circular to irregular, dark brown, target like lesions on the leaves, followed by the occurrence of yellow halo and occasional defoliation. Disease incidence was estimated to be 80% in the entire greenhouse. From sampled symptomatic leaves, small pieces of infected tissue were surface-disinfected with 1% sodium hypochlorite, air dried, and placed on PDA. After 7 days incubation at 23°C under 12 hours of natural light regime, isolates with fast growing grey-brown, velvety colonies were recovered. In colonies, singly-borne or in short chains, pale brown, cylindrical, straight or slightly curved conidia with 2 - 14 pseudosepta (34 x 2 μm) were numerous. Based on morphological features, the isolates were identified as Corynespora cassiicola (Berk. and M.A. Curtis) C.T. Wei (Dixon et al. 2009). Morphological identification was confirmed by amplifying and sequencing of the ITS region (ITS1, 5.8S rDNA and ITS2 regions) of the rDNA. Total DNA was extracted directly from fungal mycelium using a DNeasy Plant Mini Kit (Qiagen, Hilden, Germany), following the manufacturer's instructions. PCR amplification and sequencing were performed with primers ITS1F and ITS4 (Takamatsu et al. 2010). The nucleotide sequence of the representative isolate 408G-19/M (575 bp) (Accession No. MN860167) was compared with those available in GenBank and shared 98 to 99.82% identity with over 100 C. cassiicola isolates (99.65% with FJ852578 from Solanum melongena, Dixon et al. 2009). Koch's postulates were confirmed by spraying 10 healthy tomato plants (four leaf phenophase) with spore suspension (1 x 103 conidia/ml) prepared from 10 days old colonies of isolate 408G-19/M in sterile water. Healthy tomato plants inoculated with sterile water served as negative control. Plants were maintained in greenhouse conditions. On all inoculated plants, characteristic target like necrotic spots were visible 7 days post inoculation. No symptoms were recorded in the negative control after 15 days. From all symptomatic tomato leaves, the original isolate was successfully recovered. So far in Mauritius, C. cassiicola had been reported on Molucella (Anon. [Director of Agriculture] 1961) and Bignonia spp. (Orieux 1959) and also as an endophyte associated with Jatropha spp. (Rampadarath et al. 2018). Although symptoms resembling target spot were previously observed on field-grown tomatoes (Vally, pers. Comm.), to our knowledge, this is the first study confirming C. cassiicola as a tomato pathogen in Mauritius. As C. cassiicola affects a wide range of hosts (Lopez et al. 2018), including tomato, cucumber, zucchini and banana which are all important for Mauritius, the occurrence of this pathogen is a potential threat. Additionally, the results will help in developing efficient disease control strategies, thus minimizing yield loss of tomatoes produced locally.

National Scale Spatial Variation in Artificial Light at Night

The disruption to natural light regimes caused by outdoor artificial nighttime lighting has significant impacts on human health and the natural world. Artificial light at night takes two forms, light emissions and skyglow (caused by the scattering of light by water, dust and gas molecules in the atmosphere). Key to determining where the biological impacts from each form are likely to be experienced is understanding their spatial occurrence, and how this varies with other landscape factors. To examine this, we used data from the Visible Infrared Imaging Radiometer Suite (VIIRS) day/night band and the World Atlas of Artificial Night Sky Brightness, to determine covariation in (a) light emissions, and (b) skyglow, with human population density, landcover, protected areas and roads in Britain. We demonstrate that, although artificial light at night increases with human density, the amount of light per person decreases with increasing urbanization (with per capita median direct emissions three times greater in rural than urban populations, and per capita median skyglow eleven times greater). There was significant variation in artificial light at night within different landcover types, emphasizing that light pollution is not a solely urban issue. Further, half of English National Parks have higher levels of skyglow than light emissions, indicating their failure to buffer biodiversity from pressures that artificial lighting poses. The higher per capita emissions in rural than urban areas provide different challenges and opportunities for mitigating the negative human health and environmental impacts of light pollution.

КУЛЬТУРА ЗОВНІШНЬОГО ОСВІТЛЕННЯ. ПРОБЛЕМА СВІТОВОГО ЗАБРУДНЕННЯ НАВКОЛИШНЬОГО СЕРЕДОВИЩА

КУЛЬТУРА ЗОВНІШНЬОГО ОСВІТЛЕННЯ. ПРОБЛЕМА СВІТОВОГО ЗАБРУДНЕННЯ НАВКОЛИШНЬОГО СЕРЕДОВИЩА

Diurnal changes in chloroplast positioning and photosynthetic traits of C4 grass finger millet

ABSTRACT Mesophyll (M) chloroplasts in finger millet are known to aggregate to the bundle sheath side when leaves are constantly irradiated with extremely high-intensity light. This aggregative movement of M chloroplasts is also observed in natural environment, but whether a natural light regime is effective in inducing the response remains unclear. Abscisic acid is reported to trigger not only the aggregative movement but also stomatal closure, but photosynthetic responses accompanying the aggregative movement also remain unknown.We investigated changes in chloroplast positioning and photosynthetic traits under diurnal patterns of light, mimicking the natural light environment. M chloroplasts showed the aggregative movement with increasing light intensity whether it frequently fluctuated or not, and kept their aggregative positions in the midday. With decreasing light intensity, M chloroplasts returned to the random position in the evening. These results suggest that M chloroplasts often rearrange their intracellular positions during the daytime and that the chloroplast aggregative movement can be induced by a natural regime of light. The chloroplast aggregative movement was observed with increasing stomatal conductance, suggesting that stomatal closure is not crucial to trigger the chloroplast response.

Phenotypic Variation in Growth and Gene Expression Under Different Photoperiods in Allopatric Populations of the Copepod Tigriopus californicus

Daylength is a major environmental condition that varies seasonally and predictably along a latitudinal cline, where higher latitudes exhibit greater ranges in total daylengths. Generally, the circadian clock acts as a network of genes whose expression dynamics are known to control daily rhythms in response to daylength, and it enables the control of many physiological processes such as growth and development. While well studied in many model animals, the influence of daylength variation on phenotypic evolution is poorly examined in marine species. In this study we demonstrate that two allopatric populations of the intertidal crustacean Tigriopus californicus exhibit plastic and divergent phenotypic responses to changes in daylength. Using common-garden experiments, we discovered that shorter daylengths promoted decreased adult body size and faster growth rates in the two divergent populations, suggesting a plastic response to shortened days. In addition, the higher-latitude population exhibited a faster growth rate at any daylength condition, indicating a fixed response, possibly as a result of adaptation to respective natural light regimes. Gene expression profiles of several circadian clock genes, monitored throughout the day by quantitative polymerase chain reaction, revealed that the key core clock genes reach higher daily transcription maxima in the southern population compared to the northern population, pointing to divergent strategies used to respond to changes in daylength. Many modifier genes to the circadian clock showed similar plastic responses to the different daylengths, supporting the existence of at least some conserved gene expression across both populations. Ultimately, our results suggest that photoperiod and daylength exert a potent selective pressure underexplored in marine systems and warranting further future research.

Fluctuating light experiments and semi-automated plant phenotyping enabled by self-built growth racks and simple upgrades to the IMAGING-PAM

BackgroundOver the last years, several plant science labs have started to employ fluctuating growth light conditions to simulate natural light regimes more closely. Many plant mutants reveal quantifiable effects under fluctuating light despite being indistinguishable from wild-type plants under standard constant light. Moreover, many subtle plant phenotypes become intensified and thus can be studied in more detail. This observation has caused a paradigm shift within the photosynthesis research community and an increasing number of scientists are interested in using fluctuating light growth conditions. However, high installation costs for commercial controllable LED setups as well as costly phenotyping equipment can make it hard for small academic groups to compete in this emerging field.ResultsWe show a simple do-it-yourself approach to enable fluctuating light growth experiments. Our results using previously published fluctuating light sensitive mutants, stn7 and pgr5, confirm that our low-cost setup yields similar results as top-prized commercial growth regimes. Moreover, we show how we increased the throughput of our Walz IMAGING-PAM, also found in many other departments around the world. We have designed a Python and R-based open source toolkit that allows for semi-automated sample segmentation and data analysis thereby reducing the processing bottleneck of large experimental datasets. We provide detailed instructions on how to build and functionally test each setup.ConclusionsWith material costs well below USD$1000, it is possible to setup a fluctuating light rack including a constant light control shelf for comparison. This allows more scientists to perform experiments closer to natural light conditions and contribute to an emerging research field. A small addition to the IMAGING-PAM hardware not only increases sample throughput but also enables larger-scale plant phenotyping with automated data analysis.

Comparative Transcriptome Analysis of Gene Expression Patterns in Tomato Under Dynamic Light Conditions

Plants grown under highly variable natural light regimes differ strongly from plants grown under constant light (CL) regimes. Plant phenotype and adaptation responses are important for plant biomass and fitness. However, the underlying regulatory mechanisms are still poorly understood, particularly from a transcriptional perspective. To investigate the influence of different light regimes on tomato plants, three dynamic light (DL) regimes were designed, using a CL regime as control. Morphological, photosynthetic, and transcriptional differences after five weeks of treatment were compared. Leaf area, plant height, shoot /root weight, total chlorophyll content, photosynthetic rate, and stomatal conductance all significantly decreased in response to DL regimes. The biggest expression difference was found between the treatment with the highest light intensity at the middle of the day with a total of 1080 significantly up-/down-regulated genes. A total of 177 common differentially expressed genes were identified between DL and CL conditions. Finally, significant differences were observed in the levels of gene expression between DL and CL treatments in multiple pathways, predominantly of plant–pathogen interactions, plant hormone signal transductions, metabolites, and photosynthesis. These results expand the understanding of plant development and photosynthetic regulations under DL conditions by multiple pathways.

Why do nocturnal grasshoppers and katydids “salute” to flash photography?

AbstractNocturnal animals can be sensitive to powerful light from the environment. Anthropogenically induced perturbation to natural light regimes, including ecological light pollution and flash photography, can have wide‐reaching implications on the ecology and behavior. Ecological ramifications of strong lights were traditionally focused on vertebrates although there is now more focus on invertebrates. Nonetheless, there are still unanswered questions on visual ecology and evolution, particularly on individual‐level effects and of tropical species. Specifically, how invertebrate individuals react to strong light is generally undocumented. Based on opportunistic surveys around Southeast Asia, orthopterans, spotted using concentrated torchlight and exposed to sudden strong light intensity during flash macrophotography, were observed to screen themselves by positioning their foreleg over the dorsum of the compound eye. This resembled the orthopteran “saluting” to the camera. These observations provided empirical evidence of how high intensity light can unsettle orthopterans and other insects and further ecological and evolutionary hypotheses and questions can be raised to understand the effect of light pollution.