The Southern Ocean sequesters atmospheric CO2 through biological pumps, though its driving factors are debated. Modern productivity is regulated by natural iron fertilization from micronutrient influx through dust, regeneration, and Antarctic glaciers and sea ice melting (ice melt). The productivity along the eastern Antarctic continental margin was low during the last glacial period and gradually increased through the deglacial to Late Holocene, marked by distinct productivity peaks. The micronutrients also varied similarly, with reduced glacial influx and an increase in the Holocene, which may cause productivity peaks. Therefore, the coherence of enhanced productivity and micronutrient influx is considered as enhanced iron fertilization period. The productivity peaks declined within ∼1.5 kyr, mostly due to the Ekman transport and sea ice formation. Along with ice melt, the independent weathering pattern that responds with glacial- interglacial ice volume changes suggest the source of micronutrients is not terrigenous. Shelf interaction of oceanic currents can influence the water column nutrient stock significantly, while its utilization occurs during reduced ice periods (low sea ice and high glacier melting) for productivity. Therefore, enhanced natural iron fertilization periods are considered as ice low periods that occurred in a periodicity of 2 kyrs, at ∼7.5 kyr BP, ∼5.5 kyr BP, ∼4 kyr BP, ∼ 2.5 kyr BP, and ∼0.5 kyr BP, likely due to the combined effects of atmospheric and oceanographic factors driven by the high amplitude regional temperature variability during the mid to late Holocene.