The level set flamelet model for turbulent premixed combustion was recently extended to improve the modelling of the spark ignition process, to incorporate the influence of unsteady flame kernel development on turbulent flame propagation, to embrace flame—wall interaction, and to comprise pollutant prediction models. The formation of nitrogen oxides (NO x) is predicted using the extended Zeldovich mechanism. The concentrations of the involved intermediate species are determined using a chemical equilibrium assumption. The formation of engine-out unburnt hydrocarbons (UHCs) and carbon monoxides (COs) is directly linked to incomplete combustion due to flame quenching at the time the flame hits the wall. In this paper, the new model is used for the analysis of combustion in a homogeneous charged natural gas SI engine operating on lean conditions. The investigated engine operating (PAM) points differ in the applied equivalence ratio, ignition timing, and rate of exhaust gas recirculation. The influence of the load on the peak pressures, peak pressure locations, and pollutant formations is discussed in detail. A good agreement with experimental data was obtained among all engine operating points.