Native Niche Research Articles

Mycobacterium tuberculosis F-ATP Synthase Inhibitors and Targets

Mycobacteria tuberculosis (Mtb) infection causes tuberculosis (TB). TB is one of the most intractable infectious diseases, causing over 1.13 million deaths annually. Under harsh growing conditions, the innate response of mycobacteria is to shut down its respiratory metabolism to a basal level, transit into a dormant, non-replicating phase to preserve viability, and establish latent infection. Mtb utilizes non-canonical regulatory mechanisms, such as alternative oxidase pathways, to survive in low oxygen/nutrient conditions. The bacterium’s survival in its native microenvironmental niches is aided by its ability to evolve mutations to drug binding sites, enhance overexpression of various enzymes that activate β-lactam antibiotics hydrolysis, or stimulate efflux pathways to ward off the effect of antibiotics. Bedaquiline and its 3,5-dialkoxypyridine analogs, sudapyridine and squaramide S31f, have been shown to be potent Mtb F1FO-ATP synthase inhibitors of replicating and non-replicating Mtb and have brought oxidative phosphorylation into focus as an anti-TB target. In this review, we attempt to highlight non-canonical structural and regulatory pathogen-specific epitopes of the F1-domain, ligand development on such sites, structural classes of inhibitors targeting the Fo-domain, and alternative respiratory metabolic responses that Mtb employs in response to bedaquiline to ensure its survival and establish latent infection.

Abstract B003: In vitro 3D bone marrow niches differentially modulate survival, phenotype and drug responses of acute myeloid leukemia (AML) cells

Abstract Introduction: Acute myeloid leukemia (AML) is the deadliest type of hematopoietic cancer, with only about 50% of patients achieving overall survival [1]. This poor treatment outcome may be attributed to the significant heterogeneity of AML. Personalized cancer drug screening could be a solution, but primary AML cells undergo spontaneous apoptosis in ex vivo cultures [2], making personalized drug screening challenging. Research has indicated that stromal cells and extracellular matrix (ECM) create a pro-tumoral environment to support AML cells. We hypothesized that the bone marrow microenvironment mimicked by osteolineage cells encapsulated in ECM called 3D osteogenic niche (3DON) would support the survival of primary AML cells, and the presence of a biomimetic 3D cancer microenvironment would provide more reliable screening outcomes. Methods: Our laboratory has been developing a 3D microencapsulation platform using naturally occurring ECM to fabricate physiologically relevant and ECM-based 3D microtissues. 3D osteogenic niche (3DON) which mimics that in bone marrow is fabricated to support primary AML cell survival and phenotype maintenance in cultures. Specifically, 3DON derived from osteogenically differentiated mesenchymal stem cells (MSC) from healthy and AML donors are co-cultured with primary AML cells. Results: The AML cells co-cultured with the AML 3DON niche demonstrated improved viability, decreased apoptosis and preserved their CD33+ CD34− phenotype, which associated with the increased secretion of anti-apoptotic cytokines in the AML 3DON niche. In addition, AML cells under the AML 3DON niche displayed reduced sensitivity to FDA-approved chemotherapeutic drugs, doxorubicin and daunorubicin, while being more chemosensitive in the healthy 3DON niche. This further suggests the physiological relevance of the AML 3DON niche. Discussion and Conclusion: The AML 3DON maintained the viability and phenotypes of primary AML cells, suggesting that the AML 3DON environment may be more biomimetic and hence may achieve more reliable drug screening results. This study highlights the differential responses of AML cells to leukemic versus healthy bone marrow niches, suggesting the influence of native cancer cell niche in drug screening. It also suggests the potential of re-engineering healthy bone marrow niche to overcome AML chemoresistance.

The establishment and potential spread of Osmia cornuta (Hymenoptera: Megachilidae) in North America.

Mason bees, subgenus Osmia Panzer (Hymenoptera: Megachilidae), are economically and ecologically significant pollinators. In eastern North America, the rapid spread of 2 non-native species from Asia, Osmia cornifrons Radoszkowski and Osmia taurus Smith, has coincided with declines in native Osmia populations, raising concern about the effects of further exotic arrivals. Here we investigate the recent establishment in British Columbia, Canada of the European orchard bee, Osmia cornuta Latreille, previously thought to be limited to Europe and its periphery. We document O. cornuta records ranging more than 170 km, including sightings of live adults and the discovery of a multigenerational nest with hundreds of cocoons. We tested whether these cocoons could be discriminated from other Osmia species by training a machine learning classifier on features extracted from images. The best performing model could not reliably discriminate cocoons by species, raising the possibility O. cornuta could be inadvertently intermingled in future commercial shipments. Recent occurrence records of O. cornifrons and O. taurus were spatially isolated, suggesting ongoing anthropogenic dispersal of these species. We predicted the suitability of North American habitats for O. cornuta by estimating its native climate niche. This analysis indicated broad regions of the Pacific Northwest and eastern North America contain potentially suitable habitat. Our findings document the establishment of O. cornuta in North America and the potential for its expansion. Our study demonstrates the utility of accessible biodiversity data archives and public observation programs in tracking non-native species spread and highlights the need for future monitoring of exotic Osmia.

Assessing the climatic niche changes and global invasion risk of Solanum elaeagnifolium in relation to human activities

As an invasive plant, Solanum elaeagnifolium has posed a serious threat to agriculture and natural ecosystems worldwide. In order to better manage and limit its spread, we established niche models by combining distribution information and climate data from the native and invasive ranges of S. elaeagnifolium to analyze its niche changes during its colonization. Additionally, we evaluated its global invasion risk. Our results showed that the distribution of S. elaeagnifolium is affected by temperature, precipitation, altitude, and human activities. Solanum elaeagnifolium exhibits different degrees of niche conservatism and niche shift in different invasion ranges.During the global invasion of S. elaeagnifolium, both the niche shift and conservatism were observed, however, niche shift was particularly significant due to the presence of unoccupied niches (niche unfilling). Solanum elaeagnifolium generally occupied a relatively stable niche. However, a notable expansion was observed primarily in Europe and China. In Australia and Africa, its niche largely remains a subset of its native niche. Compared to the niche observed in its native range, its realized niche in China and Europe has shifted toward lower temperature and higher precipitation levels. Conversely, in Africa, the niche has shifted toward lower precipitation levels, while in Australia, it has shifted toward higher temperature. Our model predicted that S. elaeagnifolium has high invasion potential in many countries and regions. The populations of S. elaeagnifolium in China and Africa have reached the adapted stage, while the populations in Australia and Europe are currently in the stabilization stage. In addition, our research suggests that the potential distribution of S. elaeagnifolium will expand further in the future as the climate warms. All in all, our study suggests that S. elaeagnifolium has high potential to invade globally. Due to its high invasive potential, global surveillance and preventive measures are necessary to address its spread.

Convenient rapid prototyping microphysiological niche for mimicking liver native basement membrane: Liver sinusoid on a chip

Liver is responsible for the metabolization processes of up to 90 % of compounds and toxins in the body. Therefore liver-on-a-chip systems, as an in vitro promising cell culture platform, have great importance for fundamental science and drug development. In most of the liver-on-a-chip studies, seeding cells on both sides of a porous membrane, which represents the basement membrane, fail to resemble the native characteristics of biochemical, biophysical, and mechanical properties. In this study, polycarbonate (PC) and polyethylene terephthalate (PET) membranes were coated with gelatin to address this issue by accurately mimicking the native basement membrane present in the space of Disse. Various coating methods were used, including doctor blade, gel micro-injection, electrospinning, and spin coating. Spin coating was demonstrated to be the most effective technique owing to the ability to produce thin gel thickness with desirable surface roughness for cell interactions on both sides of the membrane. HepG2 and EA.HY926 cells were seeded on the upper and bottom sides of the gelatin-coated PET membrane and cultured on-chip for 7 days. Cell viability increased from 90 % to 95 %, while apoptotic index decreased. Albumin secretion notably rose between days 1–7 and 4–7, while GST-α secretion decreased from day 1 to day 7. In conclusion, the optimized spin coating process reported here can effectively modify the membranes to better mimic the native basement membrane niche characteristics.

Challenges faced by spotted seals born in captivity and released into the wild

The artificial reproduction of endangered marine species populations is becoming increasingly crucial. Determining the potential for reintegration into their natural ecological niche remains a persistent obstacle in conservation biology. Spotted seals (Phoca largha) are a flagship species in the Chinese marine ecosystem. Efforts have been made to artificially breed them to prevent local extinction. Our study monitored 18 captive-born (nine) and rehabilitated (nine) individuals released into the Bohai Sea between 2010 and 2020. We examined the ecological niche-seeking behavior of captive-born seals (CS) using rehabilitated wild seals (RS) as benchmarks. It encompassed three oceanic gradients, habitat patterns, and potential threats. The findings demonstrated that CS did not return to the appropriate latitudes, horizontals, and sea surface salinity gradients in the ocean. Despite a larger potential habitat area for CS, it exhibited high temporal variability (with an average monthly fluctuation of 53 %) and demonstrated limited spatial overlap with the RS habitat (27 % overlap in July), and four indices, including the Splitting and Global Moran's Indices indicated a higher level of habitat fragmentation. Additionally, the number of shipping hotspots and collision risk within the CS habitats were twice those of the RS. These findings suggest that the released CS did not fully integrate into its native ecological niche. Our objective is to offer a pragmatic approach and framework for monitoring and assessing marine species released into the ocean.

Expansion and Maturation of Innate Lymphoid Cell Precursors Using Human iPSC-Derived Intestinal Organoids.

Innate lymphoid cells (ILC) are enriched at mucosal barrier sites where they play critical roles in development and disease. Mucosal organoids offer a robust platform for the simultaneous differentiation and expansion of all subsets of mature ILC from a shared peripheral blood precursor. Critically, organoid identity drives tissue-specific imprinting of the culture-derived mature innate lymphoid cells, allowing for the study of bidirectional interactions between, e.g., intestinal organoids and intestine-specific ratios and populations of ILC. This protocol reduces the need for feeder cell lines and complex cytokine cocktails used to mature and maintain ILC, instead relying on a native niche of protein signals provided by mucosal epithelial cells. This protocol details the generation of human intestinal organoids (HIO) from human-induced pluripotent stem cells (hiPSC), and the subsequent establishment of co-cultures between HIO and ILC precursors for expansion and maturation. This approach has extensive applications for mechanistic studies of fundamental biological processes and as a potential GMP-compatible source of ILC for future cell therapies.

Determining Which Hydrostatic Pressure Regimes Promote Osteogenesis in Human Mesenchymal Stem Cells

Background:Compressive loading of bone causes hydrostatic pressure changes which have been proposed as an osteogenic differentiation stimulus for mesenchymal stem cells (hMSCs). We hypothesised that hMSCs are adapted to differentiate only in response to cyclic hydrostatic pressures above critical thresholds of magnitude and frequency which correspond to physiological levels of anabolic bone loading.Methods:Using a pneumatic-hydrostatic bioreactor, we applied hydrostatic pressure regimes to human hMSCs in 3D collagen hydrogel cultures for 1 h/day over 28 days to determine which levels of pressure and frequency stimulated osteogenesis in vitro.Results:Stimulation of the 3D cultures with 0–280 kPa cyclic hydrostatic pressure at 1 Hz resulted in up to 75% mineralisation in the hydrogel (without exogenous growth factors), whilst static culture or variations of the regime with either constant high pressure (280 kPa, 0 Hz), low-frequency (0.05 Hz, 280 kPa) or low-magnitude (70 kPa, 1 Hz) stimulation had no osteogenic effects (< 2% mineralisation). Nuclear translocation of YAP was observed following cyclic hydrostatic pressure in mature MLO-A5 osteoblasts but not in hMSCs, suggesting that cyclic hydrostatic pressure activates different mechanotransduction pathways in undifferentiated stem cells and committed osteoblasts.Conclusions:Hydrostatic pressure is a potent stimulus for differentiating MSC into highly active osteoblasts and may therefore be a versatile tool for translational cell engineering. We have demonstrated that there are minimum levels of force and frequency needed to trigger osteogenesis, i.e. a pressure ‘switch’, which corresponds to the physiological forces experienced by cells in their native mesenchymal niche. The mechanotransduction mechanisms underpinning these effects are the subject of further study.

Cell-Material Interactions in Covalent Adaptable Thioester Hydrogels.

Covalent adaptable networks (CANs) are polymeric networks with cross-links that can break and reform in response to external stimuli, including pH, shear, and temperature, making them potential materials for use as injectable cell delivery vehicles. In the native niche, cells rearrange the extracellular matrix (ECM) to undergo basic functions including migration, spreading, and proliferation. Bond rearrangement enables these hydrogels to mimic viscoelastic properties of the native ECM which promote migration and delivery from the material to the native tissue. In this work, we characterize thioester CANs to inform their design as effective cell delivery vehicles. Using bulk rheology, we characterize the rearrangement of these networks when they are subjected to strain, which mimics the strain applied by a syringe, and using multiple particle tracking microrheology (MPT) we measure cell-mediated remodeling of the pericellular region. Thioester networks are formed by photopolymerizing 8-arm poly(ethylene glycol) (PEG)-thiol and PEG-thioester norbornene. Bulk rheology measures scaffold properties during low and high strain and demonstrates that thioester scaffolds can recover rheological properties after high strain is applied. We then 3D encapsulated human mesenchymal stem cells (hMSCs) in thioester scaffolds. Using MPT, we characterize degradation in the pericellular region. Encapsulated hMSCs degrade these scaffolds within ≈4 days post-encapsulation. We hypothesize that this degradation is mainly due to cytoskeletal tension that cells apply to the matrix, causing adaptable thioester bonds to rearrange, leading to degradation. To verify this, we inhibited cytoskeletal tension using blebbistatin, a myosin-II inhibitor. Blebbistatin-treated cells can degrade these networks only by secreting enzymes including esterases. Esterases hydrolyze thioester bonds, which generate free thiols, leading to bond exchange. Around treated cells, we measure a decrease in the extent of pericellular degradation. We also compare cell area, eccentricity, and speed of untreated and treated cells. Inhibiting cytoskeletal tension results in significantly smaller cell area, more rounded cells, and lower cell speeds when compared to untreated cells. Overall, this work shows that cytoskeletal tension plays a major role in hMSC-mediated degradation of thioester networks. Cytoskeletal tension is also important for the spreading and motility of hMSCs in these networks. This work informs the design of thioester scaffolds for tissue regeneration and cell delivery.

Effects of medium pH on the yeast plasma membrane potential

The effects of different pH incubation values and K+ on yeast plasma membrane potential (PMP) were studied both by the fluorescence changes and the accumulation of thioflavin T (ThT), a method that has been shown most adequate for both procedures. By the changes in fluorescence of ThT, the qualitative observation of PMP at the 3 evaluated pHs indicated that cells at pH 4.0 maintain a PMP lower, but close to the observed at pH 6.0 and 7.0. By measuring the accumulation of ThT and applying the Nernst equation on the different concentrations in and out, the values of PMP could also be estimated at the different pHs, resulting in values in mV, in agreement with our observations by following the fluorescence. Yeast cells at their native niches, or during fermentations must cope with low pHs, so the importance to maintain a robust PMP to survive. The contribution of bicarbonate, derived from the fermentation to the establishment of the PMP is also described. The experiments showed once more the efficacy of the methods used with this dye.

Inflammation drives tumor growth in an immunocompetent implantable metastasis model.

Nearly 90% of cancer deaths are due to metastasis. Conventional cancer therapeutics including chemotherapy, surgery, and radiotherapy, are effective in treating primary tumors, but may aggravate disseminated tumor cells (DTCs) into regaining a proliferative state. Models isolating the post dissemination environment are needed to address the potential risks of these therapies, however modeling post dissemination environments is challenging. Often, host organisms become moribund due to primary tumor mass before native metastatic niches can evolve. Implantable tissue engineered niches have been used to attract circulating tumor cells independent of the primary tumor. Here, we serially transplant such tissue engineered niches with recruited DTCs in order to isolate the post dissemination environment. After transplantaion, 69% of scaffolds developed overt post-dissemination cancer growth, however 100% of scaffolds did not grow to a life-threatening critical size within twelve weeks. Adjuvant chemotherapy, while initially effective, did not prevent long-term DTC growth in scaffolds. Subjecting these transplanted niches to surgical resection via biopsy punch enhanced CD31, MMP9, Ly6G, and tumor burden compared to control scaffolds. Biopsy punching was able to rescue tumor incidence from prior chemotherapy. This model of serial transplantation of engineered DTC niches is a highly controllable and flexible method of establishing and systematically investigating the post-dissemination niche.

Senescent fibroblasts in the tumor stroma rewire lung cancer metabolism and plasticity.

Senescence has been demonstrated to either inhibit or promote tumorigenesis. Resolving this paradox requires spatial mapping and functional characterization of senescent cells in the native tumor niche. Here, we identified senescent p16 Ink4a + cancer-associated fibroblasts with a secretory phenotype that promotes fatty acid uptake and utilization by aggressive lung adenocarcinoma driven by Kras and p53 mutations. Furthermore, rewiring of lung cancer metabolism by p16 Ink4a + cancer-associated fibroblasts also altered tumor cell identity to a highly plastic/dedifferentiated state associated with progression in murine and human LUAD. Our ex vivo senolytic screening platform identified XL888, a HSP90 inhibitor, that cleared p16 Ink4a + cancer-associated fibroblasts in vivo. XL888 administration after establishment of advanced lung adenocarcinoma significantly reduced tumor burden concurrent with the loss of plastic tumor cells. Our study identified a druggable component of the tumor stroma that fulfills the metabolic requirement of tumor cells to acquire a more aggressive phenotype.

Microenvironment matters: In vitro 3D bone marrow niches differentially modulate survival, phenotype and drug responses of acute myeloid leukemia (AML) cells

Acute myeloid leukemia (AML) is a deadly form of leukemia with ineffective traditional treatment and frequent chemoresistance-associated relapse. Personalized drug screening holds promise in identifying optimal regimen, nevertheless, primary AML cells undergo spontaneous apoptosis during cultures, invalidating the drug screening results. Here, we reconstitute a 3D osteogenic niche (3DON) mimicking that in bone marrow to support primary AML cell survival and phenotype maintenance in cultures. Specifically, 3DON derived from osteogenically differentiated mesenchymal stem cells (MSC) from healthy and AML donors are co-cultured with primary AML cells. The AML cells under the AML_3DON niche showed enhanced viability, reduced apoptosis and maintained CD33+ CD34−phenotype, associating with elevated secretion of anti-apoptotic cytokines in the AML_3DON niche. Moreover, AML cells under the AML_3DON niche exhibited low sensitivity to two FDA-approved chemotherapeutic drugs, further suggesting the physiological resemblance of the AML_3DON niche. Most interestingly, AML cells co-cultured with the healthy_3DON niche are highly sensitive to the same sample drugs. This study demonstrates the differential responses of AML cells towards leukemic and healthy bone marrow niches, suggesting the impact of native cancer cell niche in drug screening, and the potential of re-engineering healthy bone marrow niche in AML patients as chemotherapeutic adjuvants overcoming chemoresistance, respectively.

Long-term in vitro maintenance of plasma cells in a hydrogel-enclosed human bone marrow microphysiological 3D model system

Plasma cells (PCs) in bone marrow (BM) play an important role in both protective and pathogenic humoral immune responses, e.g. in various malignant and non-malignant diseases such as multiple myeloma, primary and secondary immunodeficiencies and autoimmune diseases. Dedicated microenvironmental niches in the BM provide PCs with biomechanical and soluble factors that support their long-term survival. There is a high need for appropriate and robust model systems to better understand PCs biology, to develop new therapeutic strategies for PCs-related diseases and perform targeted preclinical studies with high predictive value. Most preclinical data have been derived from in vivo studies in mice, as in vitro studies of human PCs are limited due to restricted survival and functionality in conventional 2D cultures that do not reflect the unique niche architecture of the BM. We have developed a microphysiological, dynamic 3D BM culture system (BM-MPS) based on human primary tissue (femoral biopsies), mechanically supported by a hydrogel scaffold casing. While a bioinert agarose casing did not support PCs survival, a photo-crosslinked collagen-hyaluronic acid (Col-HA) hydrogel preserved the native BM niche architecture and allowed PCs survival in vitro for up to 2 weeks. Further, the Col-HA hydrogel was permissive to lymphocyte migration into the microphysiological system´s circulation. Long-term PCs survival was related to the stable presence in the culture of soluble factors, as APRIL, BAFF, and IL-6. Increasing immunoglobulins concentrations in the medium confirm their functionality over culture time. To the best of our knowledge, this study is the first report of successful long-term maintenance of primary-derived non-malignant PCs in vitro. Our innovative model system is suitable for in-depth in vitro studies of human PCs regulation and exploration of targeted therapeutic approaches such as CAR-T cell therapy or biologics.

A Rheological Study on the Effect of Tethering Pro- and Anti-Inflammatory Cytokines into Hydrogels on Human Mesenchymal Stem Cell Migration, Degradation, and Morphology.

Polymer-peptide hydrogels are being designed as implantable materials that deliver human mesenchymal stem cells (hMSCs) to treat wounds. Most wounds can progress through the healing process without intervention. During the normal healing process, cytokines are released from the wound to create a concentration gradient, which causes directed cell migration from the native niche to the wound site. Our work takes inspiration from this process and uniformly tethers cytokines into the scaffold to measure changes in cell-mediated degradation and motility. This is the first step in designing cytokine concentration gradients into the material to direct cell migration. We measure changes in rheological properties, encapsulated cell-mediated pericellular degradation and migration in a hydrogel scaffold with covalently tethered cytokines, either tumor necrosis factor-α (TNF-α) or transforming growth factor-β (TGF-β). TNF-α is expressed in early stages of wound healing causing an inflammatory response. TGF-β is released in later stages of wound healing causing an anti-inflammatory response in the surrounding tissue. Both cytokines cause directed cell migration. We measure no statistically significant difference in modulus or the critical relaxation exponent when tethering either cytokine in the polymeric network without encapsulated hMSCs. This indicates that the scaffold structure and rheology is unchanged by the addition of tethered cytokines. Increases in hMSC motility, morphology and cell-mediated degradation are measured using a combination of multiple particle tracking microrheology (MPT) and live-cell imaging in hydrogels with tethered cytokines. We measure that tethering TNF-α into the hydrogel increases cellular remodeling on earlier days postencapsulation and tethering TGF-β into the scaffold increases cellular remodeling on later days. We measure tethering either TGF-β or TNF-α enhances cell stretching and, subsequently, migration. This work provides rheological characterization that can be used to design new materials that present chemical cues in the pericellular region to direct cell migration.

Niche modelling and landscape genetics of the yellow-legged hornet (Vespa velutina): An integrative approach for evaluating central-marginal population dynamics in Europe.

Genetic diversity is an important biological trait for a successful invasion. During the expansion across a new territory, an invasive species may face unprecedented ecological conditions that will determine its demography and genetic diversity. The first record of the yellow-legged hornet (Vespa velutina) in Europe dates back to 2004 in France, from where it has successfully spread through a large territory in the continent, including Italy, Spain and Portugal. Integrative approaches offer a powerful strategy to detect and understand patterns of genetic variation in central and marginal populations. Here, we have analysed the relationship between genetic diversity parameters inferred from 15 V. velutina nuclear DNA microsatellite loci, and geographical and environmental drivers, such as the distance to the introduction focus, environmental suitability and distance to native and invasive niche centroids. Our results revealed a central-marginal dynamic, where allelic richness decreased towards the edge of the expansion range. The low environmental suitability of the territories invaded by marginal populations could prevent a diverse population from establishing and reducing the genetic diversity in populations at the expansion edge. Moreover, Markov chain Monte Carlo analysis showed both geographical and environmental distances were influencing population genetic differentiation. This study highlights the importance of combining genetic analysis with geographical and environmental drivers to understand genetic trends of invasive species to new environment.

The risk of biological invasion by red-eared slider turtles (Trachemys scripta elegans) in China inferred from niche shifting

Invasive alien species can cause significant economic and social-environmental damage after their invasive success. The red-eared slider (Trachemys scripta elegans) is among the first and worst invasive alien species introduced to China and has been recorded in numerous regions worldwide, not limited to China. In this study, we used species distribution models to predict the potential suitable habitat areas for T. s. elegans and compare the realized niche between its invaded and native ranges. Additionally, we forecasted changes in suitable habitat areas under different future scenarios. We found that the invaded range of T. s. elegans is projected to continue expanding in the future, imposing greater pressure on biological control efforts. We constructed the niche hypervolume of eight environmental variables in the invaded and native ranges of T. s. elegans. Our study demonstrates that: 1) the realized niche of T. s. elegans in China has shifted following its invasion, albeit retaining some aspects of its native range niche; 2) South, Central, and East China has become a region rich in potential suitable habitats in the invaded range of T. s. elegans; and 3) the influence of human activities may be the main reason for the deviation of occurrence records from the potential suitable areas for T. s. elegans. The niche shifting allows this invasive alien subspecies to better adapt to the new environment.

Exploring the impact of temporal resolution on detecting shifts in the invasive species niche: Insights from Lessepsian fishes.

In this study, we estimate the niche overlap between native and invaded ranges of 36 Lessepsian fish, focusing on how this estimate might vary in relation to the temporal resolution of sea surface temperature and salinity, which are the main niche axes determining their distribution. Specifically, we wanted to address the following questions: (i) Does the choice of temporal averaging method of variables influence the estimation of niche overlap for individual variables? (ii) Does this temporal resolution effect persist when conducting bivariate niche estimations? Niches overlap was estimated by calculating two indices and these analyses were repeated at two temporal resolutions, matching observations to the classic 'multidecadal' average of environmental conditions and to the corresponding annual average of records. Results are compared with verify whether differences can be detected in the magnitude of niche commonality measured at annual or multidecadal temporal resolution. The findings show that the temporal resolution of the data significantly influences estimates of overlap in the thermal niche. Specifically, our analysis indicates a considerable disparity between native and invasive niche regions for most species, particularly when evaluated over multidecadal periods compared with matching occurrence data to the annual mean values of years the occurrence was observed, that is matching occurrence data to a common average of 'present' conditions or to the annual mean values of years of observation. In particular, the largest overlaps between native and invaded niches occur along the salinity axis, regardless of temporal resolution. When considering both temperature and salinity together, the results remain unaffected by the temporal resolution of the environmental data. Almost 30% of the species show a different niche in their introduced range, and for the other species, the overlap between native and invaded ranges was reduced with respect to the univariate analyses.

Ecological impact of a generalist invader in the aquatic food web is mediated by environmental context

Abstract Freshwater ecosystems are threatened by the introduction of invasive species. Generalist invaders often compete with native species for shared resources, resulting in possible native species niche displacement. However, environmental heterogeneity may modulate the level of individual specialisation in invasive species, altering the outcome of interspecific competition between invasive and native species. The objectives of our study were to (1) evaluate the environmental context of dietary specialisation and trophic position of an invasive species according to the Environmental Matching Hypothesis (EMH), and (2) consider how the environmental context of invasive species dietary resource use may influence the dietary niche of native species competing for similar resources. Resource use, trophic position and dietary niche were determined using gut content and stable isotope analyses for the invasive round goby (Negobius melanostomus) and the native yellow perch (Perca flavescens), along environmental gradients in an invaded fluvial ecosystem. Our results were in support of EMH for the invader diet and resource specialisation, but not trophic position. Under environmental conditions of high water‐conductivity, round gobies were generalists feeding mostly on pelagic prey. Under more challenging environmental conditions of low water‐conductivity, the invader specialised on preferred high‐quality benthic prey. The ecological impact of the round goby was greatest at low water‐conductivity sites where the invader was a benthic specialist; there was a greater relative dietary niche overlap between the invader and the native species. Our study uniquely illustrates how invasive species’ resource specialisation can be modulated by spatial environmental heterogeneity within ecosystems, and how this can subsequently alter the ecological impact of the invader on native species in aquatic food webs.

How fish populations in Lake Bafa (Western Anatolia) respond to ecological shifts

Abstract Long‐term biodiversity monitoring is crucial for freshwater ecosystems as it enables the detection of even subtle changes and biodiversity trends, guiding conservation efforts and ensuring the sustainability of these vital habitats. Despite becoming more commonly considered in the field of freshwater ecology and biological invasions, studies using long‐term time series from Türkiye's freshwater resources have remained scarce. To assess the availability of data and ultimately present a baseline for future efforts, we combined published museum records and samples from recent field studies from the highly anthropogenically‐altered Lake Bafa in Western Anatolia covering the period 1958–2019. Lake Bafa has a very diverse aquatic ecosystem, providing habitat for both freshwater and saltwater species, and is one of the allottees in Türkiye's inland fish production. In the current study, we investigated how fish populations in Lake Bafa were affected by environmental changes and examined changes in taxonomic and functional diversity of non‐native species over time. The analyses revealed—concomitant to an increase in native marine and freshwater species richness—an increase in non‐native species richness over time. Non‐native species did not interfere with native species' niche space, whereas applied models indicate that in this highly altered ecosystem, foremost temperature and salinity shaped the fish community over time, limiting the impacts of non‐native species. These results have implications for the fishery of the lake, which includes highly valuable catadromous fish species, highlighting the value and importance of collecting long‐term data in Türkiye to better understand both invasion dynamics and changes in the naturality of Turkish ecosystems. These findings further underline the importance of long‐term data to create new management strategies for the lake and to start restoration processes, thus improving fisheries management.