Rice cultivation serves as a significant anthropogenic source of methane (CH4) and nitrous oxide (N2O). Although N2O emissions remain relatively small compared to CH4 emissions, they are remarkably affected by nitrogen-fertilized soil conditions during rice cultivation. While numerous studies have investigated nitrous oxide emissions in response to nitrogen fertilization, existing research assessing nitrous oxide emissions based on nitrogen fertilizer levels has often been limited to cultivation periods. Therefore, there is a need for comprehensive analyses covering the entire year, including the dry periods, to address nitrous oxide emissions as an important source throughout the entire agricultural cycle. In this case study, we investigated the characteristics of N2O emissions in a central region of South Korea, where a single rice-cropping cycle occurs annually over a span of three whole years, from May 2020 to May 2023. We investigated the impact of variations in temperature and soil moisture on N2O emissions during rice cultivation and fallow periods. In this context, we attempted to discover the complex dynamics of N2O emissions by comparing longer fallow periods with the rice cultivation periods and extended non-dry periods with irrigated periods. We discovered that the greater contribution of cumulative N2O emissions during the fallow period made a much greater contribution (up to approximately 90%) to the whole-year N2O emissions than those during the rice cultivation period. During the fallow period from rice harvest to rice planting in the following year, variations in N2O emissions were associated with high-flux events after rainy periods on dry soils. This highlights the considerable influence of soil moisture content and weather conditions on N2O emissions during the fallow period. This affects high emission events, which in turn significantly impact the cumulative emissions over the entire period. We underscore that assessing N2O emissions solely based on the rice cultivation period would underestimate annual emissions. To prevent underestimation of N2O emissions, periodic gas collection throughout a year covering both rice cultivation and fallow phases is required in alignment with the monitoring of different temperature and soil moisture conditions. We captured statistical differences in cumulative N2O emissions due to nitrogen fertilization treatments across the three years. However, no significant difference was observed in the three-year average emissions among the different (one, one-and-a-half, and double) nitrogen fertilization treatments, with the exception of the control treatment (no fertilization). Based on the findings, we recommend at least three whole-year evaluations to ensure the estimation accuracy of N2O emissions under different nitrogen fertilization conditions. The findings from this study could help prepare the further revision or refinement of N2O emission factors from rice cultivation in the national greenhouse gas inventories defined by the inter-governmental panel on climate change (IPCC).