In this paper, we examine the water quality impacts associated with the reuse of fixated flue gas desulfurization (FGD) material as a low permeability liner for agricultural applications. A 0.457-m-thick layer of fixated FGD material from a coal-fired power plant was utilized to create a 708m2 swine manure pond at the Ohio Agricultural Research and Development Center Western Branch in South Charleston, Ohio. To assess the effects of the fixated FGD material liner, water quality samples were collected over a period of 5years from the pond surface water and a sump collection system beneath the liner. Water samples collected from the sump and pond surface water met all Ohio nontoxic criteria, and in fact, generally met all national primary and secondary drinking water standards. Furthermore it was found that hazardous constituents (i.e., As, B, Cr, Cu, and Zn) and agricultural pollutants (i.e., phosphate and ammonia) were effectively retained by the FGD liner system. The retention of As, B, Cr, Cu, Zn, and ammonia was likely due to sorption to mineral components of the FGD liner, while Ca, Fe, and P retention were a result of both sorption and precipitation of Fe- and Ca-containing phosphate solids.