Smart synthesis of porous carbon with appropriate aperture distribution and high area utilization still retains an enormous challenge for efficient charge storage. Herein, a simple freeze-drying along with subsequent one-step carbonization/activation process is ingeniously devised to fabricate honeycomb-like nitrogen-doped porous carbon (NPC) framework with high-level active N/O-functional groups and hierarchical porous structure including substantial ultra-micropores (<0.7 nm). The underlying formation mechanism of such porous NPC framework is tentatively proposed. By finely regulating the dosage of NaHCO3, the optimized NPC (i.e., NPC114) is endowed with ultra-high surface area utilization of ∼26.4 μF cm−2 at 1 A/g in KOH electrolyte, which is close to theoretical value of electrochemical double-layer capacitance (15–25 μF cm−2), and even larger than the case (∼22.4 μF cm−2) with H2SO4 electrolyte due to the inaccessible ultra-micropores by SO42− of larger size. Similarly, as for the organic system, the as-prepared NPC115 with higher meso- and macropore surface area exhibits higher energy density of 22.36 Wh kg−1 than other counterparts. Furthermore, NPC114, when evaluated as anode material for sodium-ion batteries, exhibited more attractive high-rate Na+-storage properties as well. The in-depth understanding into intrinsic relationship between aperture distribution and electrochemical behaviors will provide meaningful guidance for electrode material design