Mycorrhizal Networks Research Articles

Seasonal variations of soil bacterial and fungal communities in a subtropical Eucalyptus plantation and their responses to throughfall reduction.

Climatic change causes obvious seasonal meteorological drought in southern China, yet there is a lack of comprehensive in situ studies on the effects of drought in Eucalyptus plantations. Here, a 50% throughfall reduction (TR) experiment was conducted to investigate the seasonal variations of soil bacterial and fungal communities and functions in a subtropical Eucalyptus plantation and their responses to TR treatment. Soil samples were collected from control (CK) and TR plots in the dry and rainy seasons and were subjected to high-throughput sequencing analysis. Results showed that TR treatment significantly reduced soil water content (SWC) in the rainy season. In CK and TR treatments, fungal alpha-diversity decreased in the rainy season while bacterial alpha-diversity did not change significantly between dry and rainy seasons. Moreover, bacterial networks were more affected by seasonal variations compared with fungal networks. Redundancy analysis showed that alkali hydrolyzed nitrogen and SWC contributed the most to the bacterial and fungal communities, respectively. Functional prediction indicated that the expression of soil bacterial metabolic functions and symbiotic fungi decreased in the rainy season. In conclusion, seasonal variations have a stronger effect on soil microbial community composition, diversity, and function compared with TR treatment. These findings could be used to develop management practices for subtropical Eucalyptus plantations and help maintain soil microbial diversity to sustain long-term ecosystem function and services in response to future changes in precipitation patterns.

The characteristics of soil microbial co-occurrence networks across a high-latitude forested wetland ecotone in China.

To understand the effect of seasonal variations on soil microbial communities in a forested wetland ecotone, here, we investigated the dynamics of the diversities and functions of both soil bacterial and fungal communities inhabiting three wetland types (forested wetland, shrub wetland and herbaceous vegetation wetland) from forest-wetland ecotone of northern Xiaoxing'an Mountains spanning different seasons. β-diversity of soil microbial communities varied significantly among different vegetation types (Betula platyphylla-Larix gmelinii, Alnus sibirica, Betula ovalifolia, and Carex schmidtii wetlands). We totally detected 34 fungal and 14 bacterial indicator taxa among distinctive groups by using Linear discriminant analysis effect size (LEfSe) analysis, and identified nine network hubs as the most important nodes detected in whole fungi, bacteria, and fungi-bacteria networks. At the vegetation type-level, bacterial and fungal microbiome living in C. schmidtii wetland soil possessed fewer positive interactions and lower modularity than those in other types of wetland soil. Furthermore, we also discovered that ectomycorrhizal fungi were dominant in the fungal microbiota existing in forested and shrub wetland soils, whereas arbuscular mycorrhizal fungi were predominated in those residing in herbaceous vegetation wetland soil. The distribution of the predicted bacterial functional enzymes also obviously varied among different vegetation-types. In addition, the correlation analysis further revealed that the key fungal network modules were significantly affected by the contents of total N and soil water-soluble K, whereas most of the bacterial network modules were remarkably positively driven by the contents of total N, soil water-soluble K, Mg and Na. Our study suggested that vegetation type are substantive factors controlling the diversity, composition and functional group of soil microbiomes from forest-wetland ecotone of northern Xiaoxing'an Mountains.

Exploring the Complex underground social networks between Plants and Mycorrhizal Fungi known as the Wood Wide Web

Mycorrhizal fungi form symbiotic relationships with plant roots, connecting multiple plants through underground networks. This biologically based “wood wide web” facilitates resource transfers between plants and is hypothesized to act as an underground communication system. We explored mycorrhizal network dynamics in sub-tropical forests of northern Pakistan. Using isotopic tracing, DNA sequencing, and root imaging, we found mycorrhizal fungal networks transferred carbon, nitrogen, and phosphorus between trees and provided growth benefits to connected seedlings. Unexpectedly, we discovered single fungal genotypes linking trees across 2 km, demonstrating extensive network reach. Our results provide comprehensive field evidence that the World Wide Web functions as a cooperative conduit enabling plants to share resources, signaling chemicals, and defense compounds. Mycorrhizal networks appear critical for seedling establishment, kin recognition, and forest resilience. Further elucidating these complex dynamics will transform our understanding of belowground ecology and enable the application of nature’s symbiotic innovations

Author Correction: Positive citation bias and overinterpreted results lead to misinformation on common mycorrhizal networks in forests

Author Correction: Positive citation bias and overinterpreted results lead to misinformation on common mycorrhizal networks in forests

Astragalus-cultivated soil was a suitable bed soil for nurturing Angelica sinensis seedlings from the rhizosphere microbiome perspective

Angelica sinensis (Oliv.) Diels is an important Chinese medicinal plant. A. sinensis seedlings are grown on an undisturbed alpine meadow soil to ensure the high-quality seedlings, but these soils are disappearing year after year. Thus, selecting a suitable bed soil for A. sinensis seedlings could ensure their long-term sustainability. Using HiSeq sequencing of 16S and 18S marker genes, we investigated the rhizosphere bacterial and fungal microbiotas of the seedlings grown in wheat, astragalus, potato, and angelica-cultivated soils at a geo-authentic habitat. Co-occurrence network analysis, canonical correspondence analysis, Mantel test, and Envfit test were used to examine the relationship between the microbiotas and the surrounding factors. Astragalus-cultivated soils exhibited the following properties: the highest plant weight, the highest neighborhood connectivity in the bacterial network, the highest ratio of positive/negative relationship in both bacterial and fungal networks, the highest relative abundance of the arbuscular mycorrhizal fungi and the ectomycorrhizal fungi, the lowest relative abundance of Rhizoctonia solani, the suitable soil pH, and the close relationship between the rhizosphere microbiotas and the ecological factors. Moreover, each growth stage has its own major drivers in all crop-cultivated soils. Climate temperature and soil pH at 56 days after planting, precipitation at 98 days, and plant weight as well as microbial biomass C and N at 129 days were the major drivers of the bacterial and fungal microbiotas. Overall, the astragalus-cultivated soil was a suitable bed soil for nurturing A. sinensis seedlings to replace the undisturbed alpine meadow soils.

Trichoderma hamatum can act as an inter-plant communicator of foliar pathogen infections by colonizing the roots of nearby plants: A new inter-plant “wired communication”

Trichoderma is a genus of filamentous fungi widely studied and used as a biological control agent in agriculture. However, its ability to form fungal networks for inter-plant communication by means of the so-called inter-plant "wired communication" has not yet been addressed. In our study we used the model plant Arabidopsis thaliana, the fungus Trichoderma hamatum (isolated from Brassicaceae plants) and the pathogens Sclerotinia sclerotiorum and Xanthomonas campestris (necrotrophic fungus and hemibiotrophic bacteria, respectively). We performed different combinations of isolated/neighboring plants and root colonization/non-colonization by T. hamatum, as well as foliar infections with the pathogens. In this way, we were able to determine how, in the absence of T. hamatum, there is an inter-plant communication that induces systemic resistance in neighboring plants of plants infected by the pathogens. On the other hand, the plants colonized by T. hamatum roots show a greater systemic resistance against the pathogens. Regarding the role of T. hamatum as an inter-plant communicator, it is the result of an increase in foliar signaling by jasmonic acid (increased expression of LOX1 and VSP2 genes and decreased expression of ICS1 and PR-1 genes), antagonistically increasing root signaling by salicylic acid (increased expression of ICS1 and PR-1 genes and decreased expression of LOX1 and VSP2). This situation prevents root colonization by T. hamatum of the foliarly infected plant and leads to massive colonization of the neighboring plant, where jasmonic acid-mediated systemic defenses are induced.

Effects of nitrogen and phosphorus supply levels and ratios on soil microbial diversity-ecosystem multifunctionality relationships in a coastal nontidal wetland

Human activities have changed the levels and ratios of nitrogen (N) and phosphorus (P) in wetland ecosystems. However, the effects of N and P levels and ratios on wetland soil microbial community and ecosystem multifunctionality remain unclear, especially on the relationships between soil microbial diversity and ecosystem multifunctionality. In this study, the effects of a 7-year experimental nutrient addition on the soil microbial community and ecosystem multifunctionality (12 function variables related to carbon, N, and P cycling) were assessed by combining three N and P supply levels with three N:P supply ratios in a coastal nontidal wetland ecosystem. According to the obtained results, the N and P supply levels significantly affected soil bacterial community composition, as well as ecosystem multifunctionality, while no significant effects of N:P supply ratios were observed. Although N and P supply levels did not significantly affect bacterial and fungal diversity, they both changed the complexity of bacterial and fungal networks. Soil ecosystem multifunctionality was significantly and positively correlated with bacterial diversity rather than fungal diversity. Moreover, the correlation coefficient between bacterial diversity and ecosystem multifunctionality showed an increasing-decreasing trend with increasing N and P supply levels and an increasing trend with increasing N:P supply ratios. However, the correlation coefficient between bacterial diversity and ecosystem multifunctionality was not significantly correlated with bacterial network complexity. The current study provides new insights into the impacts of N and P levels and ratios on soil microbial community and ecosystem multifunctionality in a coastal nontidal wetland. In particular, the present study highlighted that changes in N and P supply levels and ratios lead to changes in the relationship between soil bacterial diversity and ecosystem multifunctionality, which should be considered in related studies to accurately predict the responses of ecosystem multifunctionality to N and P inputs in coastal nontidal wetlands.

Mixing planting with native tree species reshapes soil fungal community diversity and structure in multi-generational eucalypt plantations in southern China.

The continuous planting pattern of eucalypt plantations negatively affects soil quality. A mixed planting pattern using native species implanted in pure plantations has been considered a preferable measure for this problem. However, the impact of this approachon the structure and function of fungal communities is not clear. Here, harvesting sites that had undergone two generations of eucalypt plantations were selected to investigate soil fungal community structure and the co-occurrence network characteristics in response to two silvicultural patterns involving the third generation of eucalypt plantations (E) and mixed plantations of Eucalyptus. urograndis × Cinnamomum. camphora (EC) and E. urograndis × Castanopsis. hystrix (EH). Compared with the first generation of eucalypt plantations (CK), E markedly weakened enzyme activities associated with carbon-, nitrogen-. and phosphorus-cycling. Reduced soil fungal alpha diversity, and elevated the relative abundance of Basidiomycota while decreasing the abundance of Ascomycota. In contrast, EC and EH not only enhanced fungal alpha diversity, but also reshaped fungal composition. At the class level, E caused an enrichment of oligotrophic Agaricomycetes fungi, classified into symbiotroph guild, while EC markedly decreased the abundance of those fungi and increased the abundances of Sordariomycetes, Dothideomycetes, Eurotiomycetes, and Tremellomycetes fungi, which were classified into saprotroph or pathotroph guild. Moreover, fungal network complexity and robustness topological attributes were higher or significantly higher in mixed plantations soils compared with those of pure eucalypt plantation E. Furthermore, fungal diversity, structure, and functional taxa were significantly affected by soil organic matter, pH, total nitrogen, and nitrate nitrogen.

Effect of Fenton-like reactions on the hydrolysis efficiency of lignocellulose during rice straw composting based on genomics and metabolomics sequencing

The purposes of this study were to explore the effect of Fenton-like reactions on the hydrolysis efficiency of lignocellulose and the formation mechanism of humic substance (HS) during rice straw composting based on genomics and metabolomics sequencing. The inoculation of Aspergillus fumigatus and adding Fe (II) into compost were used to establish Fenton-like reactions. Fenton-like reactions have been successfully established in vitro and in the composting process. In addition, Fenton-like reactions increased HS and humic acid concentration by 96.38% and 255.80%, respectively, further promoting the humification process. The key differential lignocellulose-degrading products in the Fenton-like reactions, especially for maltose, glucose, xylose, galactose, phenols, butyrophenone, vanillin, syringe acid, vanillic acid hydroxycinnamic acid and benzoic acid, were identified. Additionally, network analysis was divided into four modular microbes in the fungal network. The functional fungal modules' functions and their related influencing factors showed essential roles in the hydrolysis efficiency of lignocellulose and HS formation during composting. This research provides new insight into the hydrolysis efficiency of lignocellulose and then promotes the formation of HS in the Fenton-like reactions during agricultural waste composting.

Process water from hydrothermal carbonization: The impacts on the aquatic dissolved organic matter feature and microbial network at the soil-water interface

This study aimed to explore the effects of process water generated by hydrothermal carbonization (HTC-PW) at 180 °C and 260 °C on the soil-water environment. The input of HTC-PW changed the aquatic DOM components, such as the C1–C3 component decreased by 51.92–100%, and the C4 component increased by 81.40–100%. HTC-PW promoted the development of Proteobacteria and Firmicutes with relative abundance ratios of 1.75–2.31 and 1.4−3.25 times higher than CK, with a positive association revealed with the carbon conversion indicators. Furthermore, Proteobacteria play a critical role in bacterial networks exposed to high-temperature HTC-PW due to the facilitated nutrient exchange and metabolite. The prevalence of Ciliophora and Chlorophyta positively correlated with the nutrient compounds of HTC-PW. Moreover, the higher percentage of positive correlation in fungal networks was 75.26%, which implicated that microbial cooperation of fungi was more pronounced on an equal footing exposed to low-temperature HTC-PW. This study provides a theoretical basis for analyzing the potential ecological effects of HTC-PW in the soil-water environment associated with HTC applications, intending to provide parameters and guidance for the rational disposal of HTC-PW.

Positive citation bias and overinterpreted results lead to misinformation on common mycorrhizal networks in forests.

A common mycorrhizal network (CMN) is formed when mycorrhizal fungal hyphae connect the roots of multiple plants of the same or different species belowground. Recently, CMNs have captured the interest of broad audiences, especially with respect to forest function and management. We are concerned, however, that recent claims in the popular media about CMNs in forests are disconnected from evidence, and that bias towards citing positive effects of CMNs has developed in the scientific literature. We first evaluated the evidence supporting three common claims. The claims that CMNs are widespread in forests and that resources are transferred through CMNs to increase seedling performance are insufficiently supported because results from field studies vary too widely, have alternative explanations or are too limited to support generalizations. The claim that mature trees preferentially send resources and defence signals to offspring through CMNs has no peer-reviewed, published evidence. We next examined how the results from CMN research are cited and found that unsupported claims have doubled in the past 25 years; a bias towards citing positive effects may obscure our understanding of the structure and function of CMNs in forests. We conclude that knowledge on CMNs is presently too sparse and unsettled to inform forest management.

Soil fungal community characteristics vary with bamboo varieties and soil compartments.

Soil fungi play an important role in nutrient cycling, mycorrhizal symbiosis, antagonism against pathogens, and organic matter decomposition. However, our knowledge about the community characteristics of soil fungi in relation to bamboo varieties is still limited. Here, we compared the fungal communities in different soil compartments (rhizosphere vs. bulk soil) of moso bamboo (Phyllostachys edulis) and its four varieties using ITS high-throughput sequencing technology. The fungal α diversity (Shannon index) in bulk soil was significantly higher than that in rhizosphere soil, but it was not affected by bamboo variety or interactions between the soil compartment and bamboo variety. Soil compartment and bamboo variety together explained 31.74% of the variation in fungal community diversity. Soil compartment and bamboo variety were the key factors affecting the relative abundance of the major fungal taxa at the phylum and genus levels. Soil compartment mainly affected the relative abundance of the dominant fungal phylum, while bamboo variety primarily influenced the dominant fungal genus. Network analysis showed that the fungal network in rhizosphere soil was more complex, stable, and connected than that in bulk soil. A FUNGuild database analysis indicated that both soil compartment and bamboo variety affect fungal functions. Our findings provide new insights into the roles of both soil compartments and plant species (including variety) in shaping soil fungal communities.

Crop diversity promotes the recovery of fungal communities in saline-alkali areas of the Western Songnen Plain.

Phytoremediation is an effective strategy for saline land restoration. In the Western Songnen Plain, northeast China, soil fungal community recovery for saline phytoremediation has not been well documented among different cropping patterns. In this study, we tested how rotation, mixture, and monoculture cropping patterns impact fungal communities in saline-alkali soils to assess the variability between cropping patterns. The fungal communities of the soils of the different cropping types were determined using Illumina Miseq sequencing. Mixture and rotation promoted an increase in operational taxonomic unit (OTU) richness, and OTU richness in the mixture system decreased with increasing soil depth. A principal coordinate analysis (PCoA) showed that cropping patterns and soil depths influenced the structure of fungal communities, which may be due to the impact of soil chemistry. This was reflected by soil total nitrogen (TN) and electrical conductivity (EC) being the key factors driving OTU richness, while soil available potassium (AK) and total phosphorus (TP) were significantly correlated with the relative abundance of fungal dominant genus. The relative abundance of Leptosphaerulina, Alternaria, Myrothecium, Gibberella, and Tetracladium varied significantly between cropping patterns, and Leptosphaerulina was significantly associated with soil chemistry. Soil depth caused significant differences in the relative abundance of Fusarium in rotation and mixture soils, with Fusarium more commonly active at 0-15 cm deep soil. Null-model analysis revealed that the fungal community assembly of the mixture soils in 0-15 cm deep soil was dominated by deterministic processes, unlike the other two cropping patterns. Furthermore, fungal symbiotic networks were more complex in rotation and mixture than in monoculture soils, reflected in more nodes, more module hubs, and connectors. The fungal networks in rotation and mixture soils were more stable than in monoculture soils, and mixture networks were obviously more connected than rotations. FUNGuild showed that the relative proportion of saprotroph in rotation and mixture was significantly higher than that in monocultures. The highest proportion of pathotroph and symbiotroph was exhibited in rotation and mixture soils, respectively. Overall, mixture is superior to crop rotation and monocultures in restoring fungal communities of the saline-alkali soils of the Western Songnen Plain, northeast China.

Clomazone impact on fungal network complexity and stability.

Soil fungal network composition and stability are important for soil functions, but there is less understanding of the impact of clomazone on network complexity and stability. In this work, two agricultural soils were used to investigate the impact of clomazone on fungal network complexity, composition, and stability. The two soils were treated with clomazone solution (0, 0.8, 8, and 80 mg kg-1) and kept in an incubator. Under the influence of clomazone, the fungal network nodes were decreased by 12-42; however, the average degree was increased by 0.169-1.468 and fungal network density was increased by 0.003-0.054. The keystone nodes were significantly changed after clomazone treatment. Network composition was also impacted. Specifically, compared with control and clomazone treatments in both soils, the shared edges were fewer than 54 in all comparisons, and network dissimilarity was 0.97-0.98. These results suggested that fungal network composition was significantly impacted. The network robustness was increased by 0.0018-0.0209, and vulnerability was decreased by 0.00018-0.00059 in both soils, which indicated that fungal network stability was increased by clomazone. In addition, the functions of network communities were also changed in both soils. These results indicated that clomazone could significantly impact soil fungal networks.

Plastic film mulching regime altered fungal, but not bacterial community structure at the regional scale

Plastic film mulching (PFM) can influence soil nutrients, thereby improving plant growth and yield in vast dryland areas. However, it is unclear how PFM treatment affects soil microbial communities, especially with respect to community diversity, assembly processes, and co-occurrence patterns in multiple sites. In the present study, we explored the effects of traditional flat planting (TP) and PFM on the crop yield as well as the soil quality, bacterial and fungal diversity, community composition, assembly processes, and co-occurrence networks in broomcorn millet (Panicum miliaceum L.) fields in northern China. The results showed that compared with TP, PFM significantly enhanced soil hydrothermal conditions and soil nutrients, thereby improving the agronomic characteristics and yield of broomcorn millet in the nine study sites. Furthermore, PFM significantly reduced the fungal alpha diversities and changed the fungal community composition and relative abundances of some bacterial and fungal taxa. Random forest (RF) analysis indicated that fungal alpha diversity, soil temperature, and pH were the most important factors affecting broomcorn millet yield. PFM decreased the stochastic processes of the fungal community, also reduced the complexity and stability of the bacterial and fungal networks, which was reflected in the lower number of nodes, edges, ACC, and degree. Moreover, PFM also altered the bacterial and fungal keystone taxa. In summary, we were able to accurately estimate the influence of PFM on soil quality and microbial ecology, and our results provide valuable information for the sustainable development of dryland agriculture in northern China.

Different patterns and drivers of fungal communities between phyllosphere and rhizosphere in alpine grasslands

Abstract Epiphytic fungi are vital in enhancing their host plant performance and can also cause plant diseases. Generally, phyllosphere fungal community are majorly driven by climate, while rhizosphere fungal community are determined by soil properties and spatial distance. However, the differences in the relative effects of environmental factors on fungal community compositions and network structures remain far from clear between phyllosphere and rhizosphere. In this study, we conducted a large‐scale field survey along a 1400 km transect in the Tibetan Plateau and explored the composition and structure of phyllosphere and rhizosphere fungal communities from two dominant grass species (Leontopodium nanum and Stipa purpurea). L. nanum is widely distributed in relatively wet areas of alpine grasslands but S. purpurea prefers relatively dry areas. The geographical distributions of these two species overlap in the middle of the transect First, we found that precipitation was more important than temperature to affect fungal alpha diversity. High precipitation significantly promoted fungal alpha diversity in both phyllosphere and rhizosphere. Second, climate and spatial variables explained more variations in fungal community in the phyllosphere than rhizosphere. Specifically, greater precipitation promoted the relative abundances of pathotrophic fungi in the phyllosphere and rhizosphere, whereas lower precipitation only stimulated the relative abundances of symbiotrophic fungi in the rhizosphere. Third, precipitation had different impacts on phyllosphere and rhizosphere fungal networks between host species. Drought caused lower node number of fungal networks in the phyllosphere and rhizosphere of L. nanum. However, for S. purpurea, drought led to more complex and positive fungal networks in the phyllosphere and rhizosphere. Overall, these results indicated that precipitation caused different fungal community compositions along the transect between phyllosphere and rhizosphere, but consistently shaped their fungal networks. This study is among the first to provide compelling evidence on the large‐scale spatial variations and controlling factors for epiphytic fungal community in alpine grasslands. These new findings help to understand the role of epiphytic fungal community in affecting the functions of alpine grasses to cope with extreme environments. Read the free Plain Language Summary for this article on the Journal blog.

A bio-sustainable approach for reducing Eucalyptus tree-caused agricultural ecosystem hazards employing Trichoderma bio-sustained spores and mycorrhizal networks.

The presence of the exotic Eucalyptus tree in crop-growing soil and the accumulation of its undecomposed leaves is a significant ecological hazard. The waxy coating on the leaves and the phenolic compounds takes a long time to break down under normal conditions. It is necessary to explore various fungi that can degrade these leaves for an eco-friendly solution to this problem. In this study, spores of nine native Trichoderma strains were produced on wheat agar using a lactic acid-induced sporulation strategy (LAISS). Trichoderma biosustained spores and Serendipita indica (SI) spores were applied to a rice field with accumulated Eucalyptus leaves under continuous ponding (CP) and alternate flooding and wetting conditions (AFW). Among the strains, TI04 (Trichoderma viride) and TI15 (Trichoderma citrinoviride) showed faster (5 days) and massive sporulation (1.06-1.38 × 1011 CFU/g) in LAISS. In vitro, TI04 and TI15 biosustained on Eucalyptus leaves and improved rice seedling growth and SI infection under greenhouse conditions. In the rice-field experiment, Trichoderma-treatment had a threefold yield (percentage) increase from control, with TI04 (CP) increasing the yield by 30.79, TI04 (AFW) by 29.45, TI15 (CP) by 32.72, and TI15 (AFW) rising by 31.91. Remarkably, unfilled grain yield significantly decreased in all the Trichoderma treatments. Under AFW conditions, TI04 and TI15 showed a higher pH increase. Furthermore, TI04 and TI15 under AFW had higher water productivity (t ha-1 cm-1) of 0.0763 and 0.0791, respectively, and the highest rates (percentage) of SI colonization of 86.36 and 83.16, respectively. According to the findings, LAISS-produced Trichoderma spores can be applied to break down persistent wastes and restore agricultural ecosystems through increased mycorrhizae networking.

Sediment bacterial and fungal communities exhibit distinct responses to microplastic types and sizes in Taihu lake

Microplastics (MPs) are emerging contaminants in aquatic environments, yet their impact on sediment microbiota and biogeochemical processes were not well reported. Herein, microcosm experiments were performed to investigate the effects of MPs (Polystyrene, PS and Polyethylene, PE) with three size classes (ranging from 100 nm to 150–200 μm) on sediment bacterial and fungal communities over 60-day incubation from Taihu Lake. High-throughput sequencing revealed the alpha diversities of bacterial and fungal communities were reduced by MPs, dependent on MPs’ size and type. Bacterial community structures were significantly altered under all MPs treatments, with clustering for the same size class for PS and PE. Fungal community structures were significantly affected for all MPs, with PS and PE exhibiting different effects. Co-occurrence network analysis suggested MPs changed bacterial and fungal network complexities. Proteobacteria and Ascomycota formed strong associations with other phyla and demonstrated tolerance to MPs exposure. Actinobacteria, Firmicutes, and Chytridiomycota were the main respondents to MPs. The enzyme concentrations were stimulated by MPs, indicating carbon and nitrogen uptakes might be increased. Therefore, PS and PE had similar impacts on the microbial community (particularly bacteria), and sizes of MPs were the main influencing factors. MPs shifted community structure and network with distinct responses from bacteria and fungi, likely leading to the alteration of microbial-involved carbon and nitrogen cycling.

Dynamic microbial community composition, co-occurrence pattern and assembly in rhizosphere and bulk soils along a coniferous plantation chronosequence

During plantation development, soil microbial communities in different soil compartments (e.g., rhizosphere and bulk soils) is critical for the establishment of plant diversity and multiple ecosystem functions. The assembly process shaped microbial communities. However, the assembly mechanisms of soil microbial communities have rarely been studied. Therefore, we investigated the bacterial and fungal community compositions, species cooccurrence, and assembly processes in rhizosphere and bulk soils along a Pinus tabulaeformis plantation chronosequence (15, 30 and 60 years old). Results showed that plantation development altered the soil properties and microbial community structures in the rhizosphere and bulk soils. The effect of stand age on the soil properties and microbial community structures was stronger than the effect of the soil compartment. Higher turnover rates of soil microbial communities were observed in rhizosphere soil than in bulk soil. Dispersal limitation governed the bacterial and fungal community assembly throughout plantation chronosequence, while the fungal community was more susceptible to dispersal limitation. The bacterial and fungal keystone species compositions in the rhizosphere had significant positive correlations with the soil total phosphorus and nitrite nitrogen and total nitrogen and total phosphorus, respectively, indicating their importance in soil nitrogen and phosphorus cycling. The complexity of bacterial networks increased along the chronosequence, whereas fungal network complexity did not show a clear age-related trend but higher in the rhizosphere than in bulk soils. These results indicated that during Pinus tabulaeformis plantation development, soil microbial assembly was less environmentally constrained due to an increase in resource availability.

Grazing lowers soil multifunctionality but boosts soil microbial network complexity and stability in a subtropical grassland of China.

Long-term grazing profoundly affects grassland ecosystems, whereas how the soil microbiome and multiple soil ecosystem functions alter in response to two-decades of grazing, especially how soil microbiome (diversity, composition, network complexity, and stability) forms soil multifunctionality is rarely addressed. We used a long-term buffalo grazing grassland to measure the responses of soil physicochemical attributes, stoichiometry, enzyme activities, soil microbial niche width, structure, functions, and networks to grazing in a subtropical grassland of Guizhou Plateau, China. The evidence from this work suggested that grazing elevated the soil hardness, available calcium content, and available magnesium content by 6.5, 1.9, and 1.9 times (p = 0.00015-0.0160) and acid phosphatase activity, bulk density, pH by 59, 8, and 0.5 unit (p = 0.0014-0.0370), but decreased the soil water content, available phosphorus content, and multifunctionality by 47, 73, and 9-21% (p = 0.0250-0.0460), respectively. Grazing intensified the soil microbial carbon limitation (+78%, p = 0.0260) as indicated by the increased investment in the soil β-glucosidase activity (+90%, p = 0.0120). Grazing enhanced the complexity and stability of the bacterial and fungal networks but reduced the bacterial Simpson diversity (p < 0.05). The bacterial diversity, network complexity, and stability had positive effects, while bacterial and fungal compositions had negative effects on multifunctionality. This work is an original attempt to show that grazing lowered multifunctionality via the reduced bacterial diversity and shifted soil bacterial and fungal compositions rather than the enhanced bacterial and fungal network complexities and stability by grazing. Protecting the bacterial diversity from decreasing, optimizing the composition of bacteria and fungi, and enhancing the complexity and stability of bacterial network may be conducive to improving the soil multifunction of grazing grassland, on a subtropical grassland.